Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:18:28 (3549587): wrapper (7.7.26015): starting
00:18:28 (3549587): wrapper: running run_atlas (--nthreads 2)
[2026-01-09 00:18:28] Arguments: --nthreads 2
[2026-01-09 00:18:28] Threads: 2
[2026-01-09 00:18:28] Checking for CVMFS
[2026-01-09 00:18:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:18:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:18:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:18:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:18:28] 2.9.2.0 3263997 1569 56996 154924 1 56 18697381 36864000 0 130560 0 746570 99.983 64440 22956 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 00:18:28] CVMFS is ok
[2026-01-09 00:18:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:18:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:18:28] Further information can be found at the LHC@home message board.
[2026-01-09 00:18:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:18:28] Checking for apptainer binary...
[2026-01-09 00:18:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:18:28] Running /usr/bin/apptainer --version
[2026-01-09 00:18:28] apptainer version 1.4.1-1.1
[2026-01-09 00:18:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:18:28] magicA252b
[2026-01-09 00:18:28] apptainer works
[2026-01-09 00:18:28] Set ATHENA_PROC_NUMBER=2
[2026-01-09 00:18:28] Set ATHENA_CORE_NUMBER=2
[2026-01-09 00:18:28] Starting ATLAS job with PandaID=6962914526
[2026-01-09 00:18:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 03:15:07]  *** The last 200 lines of the pilot log: ***
[2026-01-09 03:15:07] 2026-01-09 02:14:35,246 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 03:15:07] 2026-01-09 02:14:35,246 | INFO     | job 6962914526 has completed (purged errors)
[2026-01-09 03:15:07] 2026-01-09 02:14:35,246 | INFO     | overall cleanup function is called
[2026-01-09 03:15:07] 2026-01-09 02:14:36,252 | INFO     | --- collectZombieJob: --- 10, [3559723]
[2026-01-09 03:15:07] 2026-01-09 02:14:36,252 | INFO     | zombie collector waiting for pid 3559723
[2026-01-09 03:15:07] 2026-01-09 02:14:36,252 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 03:15:07] 2026-01-09 02:14:36,252 | INFO     | collected zombie processes
[2026-01-09 03:15:07] 2026-01-09 02:14:36,253 | INFO     | will attempt to kill all subprocesses of pid=3559723
[2026-01-09 03:15:07] 2026-01-09 02:14:36,287 | INFO     | process IDs to be killed: [3559723] (in reverse order)
[2026-01-09 03:15:07] 2026-01-09 02:14:36,307 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 03:15:07] 2026-01-09 02:14:36,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 03:15:07] 2026-01-09 02:14:36,308 | INFO     | did not find any defunct processes belonging to 3559723
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | did not find any defunct processes belonging to 3559723
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | ready for new job
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | ***************************************
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | ***************************************
[2026-01-09 03:15:07] 2026-01-09 02:14:36,309 | INFO     | 
[2026-01-09 03:15:07] 2026-01-09 02:14:36,310 | INFO     | architecture information:
[2026-01-09 03:15:07] 2026-01-09 02:14:36,310 | INFO     | executing command: cat /etc/os-release
[2026-01-09 03:15:07] 2026-01-09 02:14:36,318 | INFO     | cat /etc/os-release:
[2026-01-09 03:15:07] NAME="CentOS Linux"
[2026-01-09 03:15:07] VERSION="7 (Core)"
[2026-01-09 03:15:07] ID="centos"
[2026-01-09 03:15:07] ID_LIKE="rhel fedora"
[2026-01-09 03:15:07] VERSION_ID="7"
[2026-01-09 03:15:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 03:15:07] ANSI_COLOR="0;31"
[2026-01-09 03:15:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 03:15:07] HOME_URL="https://www.centos.org/"
[2026-01-09 03:15:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 03:15:07] 
[2026-01-09 03:15:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 03:15:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 03:15:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 03:15:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 03:15:07] 
[2026-01-09 03:15:07] 2026-01-09 02:14:36,318 | INFO     | ***************************************
[2026-01-09 03:15:07] 2026-01-09 02:14:36,821 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 03:15:07] 2026-01-09 02:14:36,832 | INFO     | sufficient remaining disk space (342641082368 B)
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | INFO     | update_server=False
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:15:07] 2026-01-09 02:14:36,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 03:15:07] 2026-01-09 02:14:37,227 | INFO     | all data control threads have been joined
[2026-01-09 03:15:07] 2026-01-09 02:14:37,334 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 03:15:07] 2026-01-09 02:14:37,334 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 03:15:07] 2026-01-09 02:14:37,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:15:07] 2026-01-09 02:14:37,335 | INFO     | will abort loop
[2026-01-09 03:15:07] 2026-01-09 02:14:37,351 | INFO     | all job control threads have been joined
[2026-01-09 03:15:07] 2026-01-09 02:14:37,514 | INFO     | all payload control threads have been joined
[2026-01-09 03:15:07] 2026-01-09 02:14:37,838 | INFO     | [job] retrieve thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:37,839 | INFO     | [job] queue monitor thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:37,845 | INFO     | [payload] failed_post thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:37,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 03:15:07] 2026-01-09 02:14:38,233 | INFO     | [data] control thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,305 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,341 | INFO     | [job] job monitor thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,357 | INFO     | [job] control thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,381 | INFO     | [payload] validate_post thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,520 | INFO     | [payload] control thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,544 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,680 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,705 | INFO     | [data] copytool_in thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,772 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:38,776 | INFO     | [job] validate thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:39,877 | INFO     | [data] copytool_out thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:40,839 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 03:15:07] 2026-01-09 02:14:57,930 | INFO     | [monitor] cgroup control has ended
[2026-01-09 03:15:07] 2026-01-09 02:14:59,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818878773056)>', '<ExcThread(monitor, started 139818533107456)>']
[2026-01-09 03:15:07] 2026-01-09 02:15:04,185 | INFO     | all workflow threads have been joined
[2026-01-09 03:15:07] 2026-01-09 02:15:04,185 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 03:15:07] 2026-01-09 02:15:04,185 | INFO     | traces error code: 0
[2026-01-09 03:15:07] 2026-01-09 02:15:04,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 03:15:07] 2026-01-09 02:15:07,132 | INFO     | PID=3553299 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 03:15:07] 2026-01-09 02:15:07,133 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 03:15:07] 2026-01-09 02:15:07,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 03:15:07] 2026-01-09 02:15:07,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 03:15:07] 2026-01-09 02:15:07,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 03:15:07] 2026-01-09 02:15:07,133 | INFO     | [monitor] control thread has ended
[2026-01-09 03:15:07] 2026-01-09 02:15:07,171 [wrapper] ==== pilot stdout END ====
[2026-01-09 03:15:07] 2026-01-09 02:15:07,174 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 03:15:07] 2026-01-09 02:15:07,176 [wrapper] pilotpid: 3553299
[2026-01-09 03:15:07] 2026-01-09 02:15:07,179 [wrapper] Pilot exit status: 0
[2026-01-09 03:15:07] 2026-01-09 02:15:07,185 [wrapper] pandaids: 6962914526
[2026-01-09 03:15:07] 2026-01-09 02:15:07,197 [wrapper] cleanup supervisor_pilot 3578867 3553300
[2026-01-09 03:15:07] 2026-01-09 02:15:07,199 [wrapper] Test setup, not cleaning
[2026-01-09 03:15:07] 2026-01-09 02:15:07,201 [wrapper] apfmon messages muted
[2026-01-09 03:15:07] 2026-01-09 02:15:07,203 [wrapper] ==== wrapper stdout END ====
[2026-01-09 03:15:07] 2026-01-09 02:15:07,205 [wrapper] ==== wrapper stderr END ====
[2026-01-09 03:15:07]  *** Error codes and diagnostics ***
[2026-01-09 03:15:07]     "exeErrorCode": 0,
[2026-01-09 03:15:07]     "exeErrorDiag": "",
[2026-01-09 03:15:07]     "pilotErrorCode": 0,
[2026-01-09 03:15:07]     "pilotErrorDiag": "",
[2026-01-09 03:15:07]  *** Listing of results directory ***
[2026-01-09 03:15:07] total 440708
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-09 03:15:07] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc       100 Jan  9 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 03:15:07] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 00:18 run_atlas
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc       105 Jan  9 00:18 job.xml
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc 225285657 Jan  9 00:18 EVNT.47898824._000321.pool.root.1
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc    592400 Jan  9 00:18 input.tar.gz
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:18 start_atlas.sh
[2026-01-09 03:15:07] drwxrwx--x 2 boinc boinc      4096 Jan  9 00:18 shared
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:18 boinc_setup_complete
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc      6208 Jan  9 00:18 init_data.xml
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:18 boinc_lockfile
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc      2518 Jan  9 00:18 pandaJob.out
[2026-01-09 03:15:07] -rw------- 1 boinc boinc    989837 Jan  9 00:18 agis_schedconf.cvmfs.json
[2026-01-09 03:15:07] -rw------- 1 boinc boinc   1516240 Jan  9 00:18 agis_ddmendpoints.agis.ALL.json
[2026-01-09 03:15:07] drwx------ 5 boinc boinc      4096 Jan  9 00:18 pilot3
[2026-01-09 03:15:07] -rw------- 1 boinc boinc 218473262 Jan  9 03:14 HITS.47898826._017586.pool.root.1
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc       530 Jan  9 03:14 boinc_task_state.xml
[2026-01-09 03:15:07] -rw------- 1 boinc boinc      1021 Jan  9 03:14 memory_monitor_summary.json
[2026-01-09 03:15:07] -rw------- 1 boinc boinc    318348 Jan  9 03:14 log.47898826._017586.job.log.tgz.1
[2026-01-09 03:15:07] -rw------- 1 boinc boinc        95 Jan  9 03:14 pilot_heartbeat.json
[2026-01-09 03:15:07] -rw------- 1 boinc boinc      7768 Jan  9 03:14 heartbeat.json
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc        28 Jan  9 03:14 wrapper_checkpoint.txt
[2026-01-09 03:15:07] -rw------- 1 boinc boinc       747 Jan  9 03:15 pilotlog.txt
[2026-01-09 03:15:07] -rw------- 1 boinc boinc   1498868 Jan  9 03:15 log.47898826._017586.job.log.1
[2026-01-09 03:15:07] -rw------- 1 boinc boinc       357 Jan  9 03:15 output.list
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc       620 Jan  9 03:15 runtime_log
[2026-01-09 03:15:07] -rw------- 1 boinc boinc   1832960 Jan  9 03:15 result.tar.gz
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc      8918 Jan  9 03:15 runtime_log.err
[2026-01-09 03:15:07] -rw------- 1 boinc boinc       665 Jan  9 03:15 c4CNDmG8zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfIeKDm68RlMn.diag
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc      8192 Jan  9 03:15 boinc_mmap_file
[2026-01-09 03:15:07] -rw-r--r-- 1 boinc boinc     11141 Jan  9 03:15 stderr.txt
[2026-01-09 03:15:07] HITS file was successfully produced:
[2026-01-09 03:15:07] -rw------- 1 boinc boinc 218473262 Jan  9 03:14 shared/HITS.pool.root.1
[2026-01-09 03:15:07]  *** Contents of shared directory: ***
[2026-01-09 03:15:07] total 435756
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc 225285657 Jan  9 00:18 ATLAS.root_0
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc    592400 Jan  9 00:18 input.tar.gz
[2026-01-09 03:15:07] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:18 start_atlas.sh
[2026-01-09 03:15:07] -rw------- 1 boinc boinc 218473262 Jan  9 03:14 HITS.pool.root.1
[2026-01-09 03:15:07] -rw------- 1 boinc boinc   1832960 Jan  9 03:15 result.tar.gz
03:15:28 (3549587): run_atlas exited; CPU time 20659.485527
03:15:28 (3549587): called boinc_finish(0)

</stderr_txt>
]]>

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