Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:41:42 (30796): wrapper (7.7.26015): starting
18:41:42 (30796): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 18:41:42] Arguments: --nthreads 4
[2026-01-08 18:41:42] Threads: 4
[2026-01-08 18:41:42] Checking for CVMFS
[2026-01-08 18:41:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:41:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:41:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:41:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:41:42] 2.9.2.0 3070 96 52056 154915 3 57 30004141 36864001 0 130560 0 71325 99.984 4150 4350 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 18:41:42] CVMFS is ok
[2026-01-08 18:41:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:41:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:41:42] Further information can be found at the LHC@home message board.
[2026-01-08 18:41:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:41:42] Checking for apptainer binary...
[2026-01-08 18:41:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:41:42] Running /usr/bin/apptainer --version
[2026-01-08 18:41:42] apptainer version 1.4.1-1.1
[2026-01-08 18:41:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:41:42] thA373a
[2026-01-08 18:41:42] apptainer works
[2026-01-08 18:41:42] Set ATHENA_PROC_NUMBER=4
[2026-01-08 18:41:42] Set ATHENA_CORE_NUMBER=4
[2026-01-08 18:41:42] Starting ATLAS job with PandaID=6962915039
[2026-01-08 18:41:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:48:56]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | job 6962915039 has completed (purged errors)
[2026-01-08 18:48:56] 2026-01-08 17:48:29,423 | INFO     | overall cleanup function is called
[2026-01-08 18:48:56] 2026-01-08 17:48:30,428 | INFO     | --- collectZombieJob: --- 10, [41184]
[2026-01-08 18:48:56] 2026-01-08 17:48:30,428 | INFO     | zombie collector waiting for pid 41184
[2026-01-08 18:48:56] 2026-01-08 17:48:30,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:48:56] 2026-01-08 17:48:30,429 | INFO     | collected zombie processes
[2026-01-08 18:48:56] 2026-01-08 17:48:30,429 | INFO     | will attempt to kill all subprocesses of pid=41184
[2026-01-08 18:48:56] 2026-01-08 17:48:30,473 | INFO     | process IDs to be killed: [41184] (in reverse order)
[2026-01-08 18:48:56] 2026-01-08 17:48:30,506 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:48:56] 2026-01-08 17:48:30,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:48:56] 2026-01-08 17:48:30,508 | INFO     | did not find any defunct processes belonging to 41184
[2026-01-08 18:48:56] 2026-01-08 17:48:30,509 | INFO     | did not find any defunct processes belonging to 41184
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | ready for new job
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | ***************************************
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | ***************************************
[2026-01-08 18:48:56] 2026-01-08 17:48:30,510 | INFO     | 
[2026-01-08 18:48:56] 2026-01-08 17:48:30,511 | INFO     | architecture information:
[2026-01-08 18:48:56] 2026-01-08 17:48:30,511 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:48:56] 2026-01-08 17:48:30,524 | INFO     | cat /etc/os-release:
[2026-01-08 18:48:56] NAME="CentOS Linux"
[2026-01-08 18:48:56] VERSION="7 (Core)"
[2026-01-08 18:48:56] ID="centos"
[2026-01-08 18:48:56] ID_LIKE="rhel fedora"
[2026-01-08 18:48:56] VERSION_ID="7"
[2026-01-08 18:48:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:48:56] ANSI_COLOR="0;31"
[2026-01-08 18:48:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:48:56] HOME_URL="https://www.centos.org/"
[2026-01-08 18:48:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:48:56] 
[2026-01-08 18:48:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:48:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:48:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:48:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:48:56] 
[2026-01-08 18:48:56] 2026-01-08 17:48:30,525 | INFO     | ***************************************
[2026-01-08 18:48:56] 2026-01-08 17:48:31,028 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 18:48:56] 2026-01-08 17:48:31,045 | INFO     | sufficient remaining disk space (331072143360 B)
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | INFO     | update_server=False
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 18:48:56] 2026-01-08 17:48:31,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:48:56] 2026-01-08 17:48:31,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:48:56] 2026-01-08 17:48:31,047 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:48:56] 2026-01-08 17:48:31,047 | INFO     | aborting loop
[2026-01-08 18:48:56] 2026-01-08 17:48:31,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:48:56] 2026-01-08 17:48:31,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:48:56] 2026-01-08 17:48:31,166 | INFO     | all payload control threads have been joined
[2026-01-08 18:48:56] 2026-01-08 17:48:31,468 | INFO     | all data control threads have been joined
[2026-01-08 18:48:56] 2026-01-08 17:48:31,818 | INFO     | all job control threads have been joined
[2026-01-08 18:48:56] 2026-01-08 17:48:32,052 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,052 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,052 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,172 | INFO     | [payload] control thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,186 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,442 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,474 | INFO     | [data] control thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,514 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:32,824 | INFO     | [job] control thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,013 | INFO     | [job] validate thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,053 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,113 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,203 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,386 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:33,595 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:35,053 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:48:56] 2026-01-08 17:48:50,606 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:48:56] 2026-01-08 17:48:51,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640551331648)>', '<ExcThread(monitor, started 139639738308352)>']
[2026-01-08 18:48:56] 2026-01-08 17:48:52,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:48:56] 2026-01-08 17:48:52,159 | INFO     | [monitor] control thread has ended
[2026-01-08 18:48:56] 2026-01-08 17:48:56,200 | INFO     | all workflow threads have been joined
[2026-01-08 18:48:56] 2026-01-08 17:48:56,200 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:48:56] 2026-01-08 17:48:56,200 | INFO     | traces error code: 0
[2026-01-08 18:48:56] 2026-01-08 17:48:56,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:48:56] 2026-01-08 17:48:56,276 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:48:56] 2026-01-08 17:48:56,280 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:48:56] 2026-01-08 17:48:56,284 [wrapper] pilotpid: 34610
[2026-01-08 18:48:56] 2026-01-08 17:48:56,288 [wrapper] Pilot exit status: 0
[2026-01-08 18:48:56] 2026-01-08 17:48:56,300 [wrapper] pandaids: 6962915039
[2026-01-08 18:48:56] 2026-01-08 17:48:56,322 [wrapper] cleanup supervisor_pilot   34616 34611
[2026-01-08 18:48:56] 2026-01-08 17:48:56,326 [wrapper] Test setup, not cleaning
[2026-01-08 18:48:56] 2026-01-08 17:48:56,330 [wrapper] apfmon messages muted
[2026-01-08 18:48:56] 2026-01-08 17:48:56,334 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:48:56] 2026-01-08 17:48:56,338 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:48:56]  *** Error codes and diagnostics ***
[2026-01-08 18:48:56]     "exeErrorCode": 65,
[2026-01-08 18:48:56]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7754.91 KB/s",
[2026-01-08 18:48:56]     "pilotErrorCode": 1305,
[2026-01-08 18:48:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-01-08 18:48:56]  *** Listing of results directory ***
[2026-01-08 18:48:56] total 223752
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 18:48:56] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc       100 Jan  8 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:48:56] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 18:41 run_atlas
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc       105 Jan  8 18:41 job.xml
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc 224751402 Jan  8 18:41 EVNT.47898824._000393.pool.root.1
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc    592393 Jan  8 18:41 input.tar.gz
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc     15847 Jan  8 18:41 start_atlas.sh
[2026-01-08 18:48:56] drwxrwx--x 2 boinc boinc      4096 Jan  8 18:41 shared
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc         0 Jan  8 18:41 boinc_setup_complete
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc      6377 Jan  8 18:41 init_data.xml
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc         0 Jan  8 18:41 boinc_lockfile
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc      2518 Jan  8 18:41 pandaJob.out
[2026-01-08 18:48:56] -rw------- 1 boinc boinc    989837 Jan  8 18:41 agis_schedconf.cvmfs.json
[2026-01-08 18:48:56] -rw------- 1 boinc boinc   1516240 Jan  8 18:41 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:48:56] drwx------ 5 boinc boinc      4096 Jan  8 18:41 pilot3
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc       527 Jan  8 18:45 boinc_task_state.xml
[2026-01-08 18:48:56] -rw------- 1 boinc boinc      1000 Jan  8 18:46 memory_monitor_summary.json
[2026-01-08 18:48:56] -rw------- 1 boinc boinc    117818 Jan  8 18:46 log.47898826._018004.job.log.tgz.1
[2026-01-08 18:48:56] -rw------- 1 boinc boinc        95 Jan  8 18:47 pilot_heartbeat.json
[2026-01-08 18:48:56] -rw------- 1 boinc boinc      9845 Jan  8 18:48 heartbeat.json
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc        24 Jan  8 18:48 wrapper_checkpoint.txt
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc      8192 Jan  8 18:48 boinc_mmap_file
[2026-01-08 18:48:56] -rw------- 1 boinc boinc      4556 Jan  8 18:48 pilotlog.txt
[2026-01-08 18:48:56] -rw------- 1 boinc boinc    113152 Jan  8 18:48 log.47898826._018004.job.log.1
[2026-01-08 18:48:56] -rw------- 1 boinc boinc       188 Jan  8 18:48 output.list
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc       620 Jan  8 18:48 runtime_log
[2026-01-08 18:48:56] -rw------- 1 boinc boinc    256000 Jan  8 18:48 result.tar.gz
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc      8749 Jan  8 18:48 runtime_log.err
[2026-01-08 18:48:56] -rw------- 1 boinc boinc       651 Jan  8 18:48 f8xLDmU8zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmORjKDmyA5pzm.diag
[2026-01-08 18:48:56] -rw-r--r-- 1 boinc boinc     12736 Jan  8 18:48 stderr.txt
[2026-01-08 18:48:56] No HITS result produced
[2026-01-08 18:48:56]  *** Contents of shared directory: ***
[2026-01-08 18:48:56] total 220336
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc 224751402 Jan  8 18:41 ATLAS.root_0
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc    592393 Jan  8 18:41 input.tar.gz
[2026-01-08 18:48:56] -rw-r--r-- 2 boinc boinc     15847 Jan  8 18:41 start_atlas.sh
[2026-01-08 18:48:56] -rw------- 1 boinc boinc    256000 Jan  8 18:48 result.tar.gz
18:48:58 (30796): run_atlas exited; CPU time 137.504310
18:48:58 (30796): called boinc_finish(0)

</stderr_txt>
]]>

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