Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:43:33 (30713): wrapper (7.7.26015): starting
16:43:33 (30713): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 16:43:33] Arguments: --nthreads 4
[2026-01-08 16:43:33] Threads: 4
[2026-01-08 16:43:33] Checking for CVMFS
[2026-01-08 16:43:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:43:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:43:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:43:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:43:34] 2.9.2.0 3071 100 52152 154912 3 57 29979906 36864001 0 130560 0 71359 99.995 4024 35928 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 16:43:34] CVMFS is ok
[2026-01-08 16:43:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:43:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:43:34] Further information can be found at the LHC@home message board.
[2026-01-08 16:43:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:43:34] Checking for apptainer binary...
[2026-01-08 16:43:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:43:34] Running /usr/bin/apptainer --version
[2026-01-08 16:43:34] apptainer version 1.4.1-1.1
[2026-01-08 16:43:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:43:34] thA373a
[2026-01-08 16:43:34] apptainer works
[2026-01-08 16:43:34] Set ATHENA_PROC_NUMBER=4
[2026-01-08 16:43:34] Set ATHENA_CORE_NUMBER=4
[2026-01-08 16:43:34] Starting ATLAS job with PandaID=6962914876
[2026-01-08 16:43:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:04:49 (2872): wrapper (7.7.26015): starting
17:04:49 (2872): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 17:04:49] Arguments: --nthreads 4
[2026-01-08 17:04:49] Threads: 4
[2026-01-08 17:04:49] This job has been restarted, cleaning up previous attempt
[2026-01-08 17:04:49] Checking for CVMFS
[2026-01-08 17:04:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:04:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:04:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:04:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:04:53] 2.9.2.0 3070 0 29072 154912 4 1 29980873 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 17:04:53] CVMFS is ok
[2026-01-08 17:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:04:53] Further information can be found at the LHC@home message board.
[2026-01-08 17:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:04:53] Checking for apptainer binary...
[2026-01-08 17:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:04:53] Running /usr/bin/apptainer --version
[2026-01-08 17:04:53] apptainer version 1.4.1-1.1
[2026-01-08 17:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:04:53] thA373a
[2026-01-08 17:04:53] apptainer works
[2026-01-08 17:04:53] Set ATHENA_PROC_NUMBER=4
[2026-01-08 17:04:53] Set ATHENA_CORE_NUMBER=4
[2026-01-08 17:04:53] Starting ATLAS job with PandaID=6962914876
[2026-01-08 17:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:41:37]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:41:37] 2026-01-08 17:41:05,590 | INFO     | will attempt to kill all subprocesses of pid=13806
[2026-01-08 18:41:37] 2026-01-08 17:41:05,634 | INFO     | process IDs to be killed: [13806] (in reverse order)
[2026-01-08 18:41:37] 2026-01-08 17:41:05,666 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:41:37] 2026-01-08 17:41:05,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:41:37] 2026-01-08 17:41:05,668 | INFO     | did not find any defunct processes belonging to 13806
[2026-01-08 18:41:37] 2026-01-08 17:41:05,669 | INFO     | did not find any defunct processes belonging to 13806
[2026-01-08 18:41:37] 2026-01-08 17:41:05,669 | INFO     | ready for new job
[2026-01-08 18:41:37] 2026-01-08 17:41:05,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:41:37] 2026-01-08 17:41:05,670 | INFO     | ***************************************
[2026-01-08 18:41:37] 2026-01-08 17:41:05,670 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:41:37] 2026-01-08 17:41:05,670 | INFO     | ***************************************
[2026-01-08 18:41:37] 2026-01-08 17:41:05,670 | INFO     | 
[2026-01-08 18:41:37] 2026-01-08 17:41:05,670 | INFO     | architecture information:
[2026-01-08 18:41:37] 2026-01-08 17:41:05,671 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:41:37] 2026-01-08 17:41:05,684 | INFO     | cat /etc/os-release:
[2026-01-08 18:41:37] NAME="CentOS Linux"
[2026-01-08 18:41:37] VERSION="7 (Core)"
[2026-01-08 18:41:37] ID="centos"
[2026-01-08 18:41:37] ID_LIKE="rhel fedora"
[2026-01-08 18:41:37] VERSION_ID="7"
[2026-01-08 18:41:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:41:37] ANSI_COLOR="0;31"
[2026-01-08 18:41:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:41:37] HOME_URL="https://www.centos.org/"
[2026-01-08 18:41:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:41:37] 
[2026-01-08 18:41:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:41:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:41:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:41:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:41:37] 
[2026-01-08 18:41:37] 2026-01-08 17:41:05,684 | INFO     | ***************************************
[2026-01-08 18:41:37] 2026-01-08 17:41:06,187 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | INFO     | sufficient remaining disk space (330855088128 B)
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | INFO     | update_server=False
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:41:37] 2026-01-08 17:41:06,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:41:37] 2026-01-08 17:41:06,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:41:37] 2026-01-08 17:41:06,205 | INFO     | aborting loop
[2026-01-08 18:41:37] 2026-01-08 17:41:06,772 | INFO     | all payload control threads have been joined
[2026-01-08 18:41:37] 2026-01-08 17:41:06,816 | INFO     | all job control threads have been joined
[2026-01-08 18:41:37] 2026-01-08 17:41:06,951 | INFO     | all data control threads have been joined
[2026-01-08 18:41:37] 2026-01-08 17:41:07,210 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,210 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,210 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,217 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,342 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:41:37] 2026-01-08 17:41:07,427 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,622 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,743 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,774 | INFO     | [payload] control thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,821 | INFO     | [job] control thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,957 | INFO     | [data] control thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:07,959 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:08,460 | INFO     | [job] validate thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:08,624 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:08,700 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:09,014 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:41:37] 2026-01-08 17:41:09,349 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:10,211 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:41:37] 2026-01-08 17:41:10,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852853253952)>', '<ExcThread(monitor, started 139851785565952)>']
[2026-01-08 18:41:37] 2026-01-08 17:41:16,023 | INFO     | all workflow threads have been joined
[2026-01-08 18:41:37] 2026-01-08 17:41:16,023 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:41:37] 2026-01-08 17:41:16,023 | INFO     | traces error code: 0
[2026-01-08 18:41:37] 2026-01-08 17:41:16,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:41:37] 2026-01-08 17:41:37,247 | INFO     | PID=7210 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:41:37] 2026-01-08 17:41:37,248 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:41:37] 2026-01-08 17:41:37,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:41:37] 2026-01-08 17:41:37,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:41:37] 2026-01-08 17:41:37,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:41:37] 2026-01-08 17:41:37,248 | INFO     | [monitor] control thread has ended
[2026-01-08 18:41:37] 2026-01-08 17:41:37,321 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:41:37] 2026-01-08 17:41:37,325 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:41:37] 2026-01-08 17:41:37,329 [wrapper] pilotpid: 7210
[2026-01-08 18:41:37] 2026-01-08 17:41:37,333 [wrapper] Pilot exit status: 0
[2026-01-08 18:41:37] 2026-01-08 17:41:37,346 [wrapper] pandaids: 6962914876 6962914876
[2026-01-08 18:41:37] 2026-01-08 17:41:37,368 [wrapper] cleanup supervisor_pilot   26062 7211
[2026-01-08 18:41:37] 2026-01-08 17:41:37,372 [wrapper] Test setup, not cleaning
[2026-01-08 18:41:37] 2026-01-08 17:41:37,376 [wrapper] apfmon messages muted
[2026-01-08 18:41:37] 2026-01-08 17:41:37,379 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:41:37] 2026-01-08 17:41:37,383 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:41:37]  *** Error codes and diagnostics ***
[2026-01-08 18:41:37]     "exeErrorCode": 0,
[2026-01-08 18:41:37]     "exeErrorDiag": "",
[2026-01-08 18:41:37]     "pilotErrorCode": 0,
[2026-01-08 18:41:37]     "pilotErrorDiag": "",
[2026-01-08 18:41:37]  *** Listing of results directory ***
[2026-01-08 18:41:37] total 657728
[2026-01-08 18:41:37] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 18:41:37] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc       100 Jan  8 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:41:37] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 16:43 run_atlas
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc       105 Jan  8 16:43 job.xml
[2026-01-08 18:41:37] -rw-r--r-- 3 boinc boinc 225142068 Jan  8 16:43 EVNT.47898824._000386.pool.root.1
[2026-01-08 18:41:37] -rw-r--r-- 3 boinc boinc 225142068 Jan  8 16:43 ATLAS.root_0
[2026-01-08 18:41:37] drwxrwx--x 2 boinc boinc      4096 Jan  8 16:43 shared
[2026-01-08 18:41:37] -rw-r--r-- 2 boinc boinc    592401 Jan  8 16:43 input.tar.gz
[2026-01-08 18:41:37] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:43 start_atlas.sh
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:43 boinc_setup_complete
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:43 boinc_lockfile
[2026-01-08 18:41:37] -rw------- 1 boinc boinc   1516240 Jan  8 16:43 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc      2518 Jan  8 17:04 pandaJob.out
[2026-01-08 18:41:37] -rw------- 1 boinc boinc    989843 Jan  8 17:05 agis_schedconf.cvmfs.json
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc      6383 Jan  8 17:44 init_data.xml
[2026-01-08 18:41:37] -rw------- 1 boinc boinc 217069393 Jan  8 18:40 HITS.47898826._017841.pool.root.1
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc       530 Jan  8 18:40 boinc_task_state.xml
[2026-01-08 18:41:37] -rw------- 1 boinc boinc      1033 Jan  8 18:40 memory_monitor_summary.json
[2026-01-08 18:41:37] -rw------- 1 boinc boinc    288050 Jan  8 18:40 log.47898826._017841.job.log.tgz.1
[2026-01-08 18:41:37] -rw------- 1 boinc boinc      7799 Jan  8 18:41 heartbeat.json
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc      8192 Jan  8 18:41 boinc_mmap_file
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc        27 Jan  8 18:41 wrapper_checkpoint.txt
[2026-01-08 18:41:37] -rw------- 1 boinc boinc       744 Jan  8 18:41 pilotlog.txt
[2026-01-08 18:41:37] -rw------- 1 boinc boinc        97 Jan  8 18:41 pilot_heartbeat.json
[2026-01-08 18:41:37] -rw------- 1 boinc boinc    835866 Jan  8 18:41 log.47898826._017841.job.log.1
[2026-01-08 18:41:37] -rw------- 1 boinc boinc       357 Jan  8 18:41 output.list
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc       620 Jan  8 18:41 runtime_log
[2026-01-08 18:41:37] -rw------- 1 boinc boinc   1146880 Jan  8 18:41 result.tar.gz
[2026-01-08 18:41:37] -rw------- 1 boinc boinc       790 Jan  8 18:41 syyMDmI8zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwQjKDmQ1EPIo.diag
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc      8987 Jan  8 18:41 runtime_log.err
[2026-01-08 18:41:37] -rw-r--r-- 1 boinc boinc     12281 Jan  8 18:41 stderr.txt
[2026-01-08 18:41:37] HITS file was successfully produced:
[2026-01-08 18:41:37] -rw------- 1 boinc boinc 217069393 Jan  8 18:40 shared/HITS.pool.root.1
[2026-01-08 18:41:37]  *** Contents of shared directory: ***
[2026-01-08 18:41:37] total 433576
[2026-01-08 18:41:37] -rw-r--r-- 3 boinc boinc 225142068 Jan  8 16:43 ATLAS.root_0
[2026-01-08 18:41:37] -rw-r--r-- 2 boinc boinc    592401 Jan  8 16:43 input.tar.gz
[2026-01-08 18:41:37] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:43 start_atlas.sh
[2026-01-08 18:41:37] -rw------- 1 boinc boinc 217069393 Jan  8 18:40 HITS.pool.root.1
[2026-01-08 18:41:37] -rw------- 1 boinc boinc   1146880 Jan  8 18:41 result.tar.gz
18:41:39 (2872): run_atlas exited; CPU time 21954.680033
18:41:39 (2872): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN