Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:38:03 (3000): wrapper (7.7.26015): starting
13:38:03 (3000): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 13:38:03] Arguments: --nthreads 8
[2026-01-08 13:38:03] Threads: 8
[2026-01-08 13:38:03] Checking for CVMFS
[2026-01-08 13:38:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:38:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:38:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:38:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:38:06] 2.11.2.0 10693 33984 100352 154906 0 60 19731118 25165824 96 130560 0 14745235 99.821 8348398 3424 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 13:38:06] CVMFS is ok
[2026-01-08 13:38:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:38:06] Checking for apptainer binary...
[2026-01-08 13:38:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:38:06] Running /usr/bin/apptainer --version
[2026-01-08 13:38:06] apptainer version 1.3.2-1.el7
[2026-01-08 13:38:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:38:13] cg-vwn439.simple-grid.lan
[2026-01-08 13:38:13] apptainer works
[2026-01-08 13:38:13] Set ATHENA_PROC_NUMBER=8
[2026-01-08 13:38:13] Set ATHENA_CORE_NUMBER=8
[2026-01-08 13:38:13] Starting ATLAS job with PandaID=6962922695
[2026-01-08 13:38:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 19:38:29]  *** The last 200 lines of the pilot log: ***
[2026-01-08 19:38:29] 2026-01-08 18:37:34,143 | INFO     | time since job start (21292s) is within the limit (174528.0s)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,769 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 19:38:29] 2026-01-08 18:37:34,770 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 19:38:29] 2026-01-08 18:37:34,772 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6962922695/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,772 | INFO     | extracted standard info from prmon json
[2026-01-08 19:38:29] 2026-01-08 18:37:34,772 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 19:38:29] 2026-01-08 18:37:34,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 19:38:29] 2026-01-08 18:37:34,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 19:38:29] 2026-01-08 18:37:34,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 19:38:29] 2026-01-08 18:37:34,780 | INFO     | fitting pss+swap vs Time
[2026-01-08 19:38:29] 2026-01-08 18:37:34,789 | INFO     | sum of square deviations: 12080189290.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,793 | INFO     | sum of deviations: 198510757798.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,793 | INFO     | mean x: 1767887011.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,793 | INFO     | mean y: 2433818.7345132744
[2026-01-08 19:38:29] 2026-01-08 18:37:34,793 | INFO     | intersect: -29048815448.14276
[2026-01-08 19:38:29] 2026-01-08 18:37:34,794 | INFO     | chi2: 8.76202247779348
[2026-01-08 19:38:29] 2026-01-08 18:37:34,795 | INFO     | sum of square deviations: 11553509647.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,798 | INFO     | sum of deviations: 217366581196.99997
[2026-01-08 19:38:29] 2026-01-08 18:37:34,798 | INFO     | mean x: 1767886858.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,798 | INFO     | mean y: 2439201.017964072
[2026-01-08 19:38:29] 2026-01-08 18:37:34,799 | INFO     | intersect: -33258408290.324337
[2026-01-08 19:38:29] 2026-01-08 18:37:34,799 | INFO     | chi2: 8.047051166631755
[2026-01-08 19:38:29] 2026-01-08 18:37:34,799 | INFO     | current chi2=8.047051166631755 (change=8.159889032169817 %)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,799 | INFO     | right removable region: 333
[2026-01-08 19:38:29] 2026-01-08 18:37:34,800 | INFO     | sum of square deviations: 11553509647.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,804 | INFO     | sum of deviations: 80039783051.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,804 | INFO     | mean x: 1767887163.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,804 | INFO     | mean y: 2468106.4790419163
[2026-01-08 19:38:29] 2026-01-08 18:37:34,804 | INFO     | intersect: -12245005548.057304
[2026-01-08 19:38:29] 2026-01-08 18:37:34,805 | INFO     | chi2: 3.8280755037752106
[2026-01-08 19:38:29] 2026-01-08 18:37:34,805 | INFO     | current chi2=3.8280755037752106 (change=56.31059480300231 %)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,805 | INFO     | sum of square deviations: 11042365180.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,817 | INFO     | sum of deviations: -11663553128.999996
[2026-01-08 19:38:29] 2026-01-08 18:37:34,817 | INFO     | mean x: 1767887316.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,818 | INFO     | mean y: 2495442.1550151976
[2026-01-08 19:38:29] 2026-01-08 18:37:34,818 | INFO     | intersect: 1869835210.4139025
[2026-01-08 19:38:29] 2026-01-08 18:37:34,818 | INFO     | chi2: 1.0445544959299538
[2026-01-08 19:38:29] 2026-01-08 18:37:34,818 | INFO     | current chi2=1.0445544959299538 (change=72.71332566717076 %)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,819 | INFO     | sum of square deviations: 10546523325.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,822 | INFO     | sum of deviations: -29340332568.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,823 | INFO     | mean x: 1767887468.5
[2026-01-08 19:38:29] 2026-01-08 18:37:34,823 | INFO     | mean y: 2500843.651234568
[2026-01-08 19:38:29] 2026-01-08 18:37:34,823 | INFO     | intersect: 4920747802.487175
[2026-01-08 19:38:29] 2026-01-08 18:37:34,823 | INFO     | chi2: 0.8771016517151681
[2026-01-08 19:38:29] 2026-01-08 18:37:34,823 | INFO     | current chi2=0.8771016517151681 (change=16.031029962271575 %)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,824 | INFO     | left removable region: 30
[2026-01-08 19:38:29] 2026-01-08 18:37:34,824 | INFO     | sum of square deviations: 8625843592.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,827 | INFO     | sum of deviations: 13195039198.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,827 | INFO     | mean x: 1767887743.0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,827 | INFO     | mean y: 2500334.184818482
[2026-01-08 19:38:29] 2026-01-08 18:37:34,828 | INFO     | intersect: -2701855224.5206046
[2026-01-08 19:38:29] 2026-01-08 18:37:34,828 | INFO     | chi2: 0.0006762924790782756
[2026-01-08 19:38:29] 2026-01-08 18:37:34,828 | INFO     | current memory leak: 1.53 B/s (using 303 data points, chi2=0.00)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,829 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,829 | INFO     | ..............................
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . Timing measurements:
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . get job = 0 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . initial setup = 14 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . payload setup = 155 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . stage-in = 0 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . payload execution = 20797 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . stage-out = 4 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | . log creation = 1 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,830 | INFO     | ..............................
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | 
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | job summary report
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | --------------------------------------------------
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | PanDA job id: 6962922695
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | task id: 47898826
[2026-01-08 19:38:29] 2026-01-08 18:37:34,970 | INFO     | errors: (none)
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | pilot state: finished 
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | transexitcode: 0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | exeerrorcode: 0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | exeerrordiag: 
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | exitcode: 0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | exitmsg: OK
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | cpuconsumptiontime: 77923 s
[2026-01-08 19:38:29] 2026-01-08 18:37:34,971 | INFO     | nevents: 400
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | neventsw: 0
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | pid: 13253
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | pgrp: 13253
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | corecount: 8
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | event service: False
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | sizes: {0: 2283140, 1: 2283825, 2: 2284024, 13: 2284024, 24: 2284080, 35: 2284108, 45: 2284264, 56: 2284292, 67: 2284320, 77: 2284348, 88: 2284404, 99: 2284712, 10
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | --------------------------------------------------
[2026-01-08 19:38:29] 2026-01-08 18:37:34,972 | INFO     | 
[2026-01-08 19:38:29] 2026-01-08 18:37:34,973 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-08 19:38:29] 2026-01-08 18:37:35,493 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,493 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,493 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,493 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 19:38:29] 2026-01-08 18:37:35,496 | INFO     | job 6962922695 has completed (purged errors)
[2026-01-08 19:38:29] 2026-01-08 18:37:35,496 | INFO     | overall cleanup function is called
[2026-01-08 19:38:29] 2026-01-08 18:37:36,505 | INFO     | --- collectZombieJob: --- 10, [13253]
[2026-01-08 19:38:29] 2026-01-08 18:37:36,505 | INFO     | zombie collector waiting for pid 13253
[2026-01-08 19:38:29] 2026-01-08 18:37:36,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 19:38:29] 2026-01-08 18:37:36,506 | INFO     | collected zombie processes
[2026-01-08 19:38:29] 2026-01-08 18:37:36,506 | INFO     | will attempt to kill all subprocesses of pid=13253
[2026-01-08 19:38:29] 2026-01-08 18:37:36,581 | INFO     | process IDs to be killed: [13253] (in reverse order)
[2026-01-08 19:38:29] 2026-01-08 18:37:37,639 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 19:38:29] 2026-01-08 18:37:37,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 19:38:29] 2026-01-08 18:37:37,642 | INFO     | did not find any defunct processes belonging to 13253
[2026-01-08 19:38:29] 2026-01-08 18:37:37,651 | INFO     | did not find any defunct processes belonging to 13253
[2026-01-08 19:38:29] 2026-01-08 18:37:37,651 | INFO     | ready for new job
[2026-01-08 19:38:29] 2026-01-08 18:37:37,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 19:38:29] 2026-01-08 18:37:37,654 | INFO     | ***************************************
[2026-01-08 19:38:29] 2026-01-08 18:37:37,654 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 19:38:29] 2026-01-08 18:37:37,654 | INFO     | ***************************************
[2026-01-08 19:38:29] 2026-01-08 18:37:37,654 | INFO     | 
[2026-01-08 19:38:29] 2026-01-08 18:37:37,655 | INFO     | pilot is running in a VM
[2026-01-08 19:38:29] 2026-01-08 18:37:37,655 | INFO     | architecture information:
[2026-01-08 19:38:29] 2026-01-08 18:37:37,670 | INFO     | executing command: cat /etc/os-release
[2026-01-08 19:38:29] 2026-01-08 18:37:37,938 | INFO     | cat /etc/os-release:
[2026-01-08 19:38:29] NAME="CentOS Linux"
[2026-01-08 19:38:29] VERSION="7 (Core)"
[2026-01-08 19:38:29] ID="centos"
[2026-01-08 19:38:29] ID_LIKE="rhel fedora"
[2026-01-08 19:38:29] VERSION_ID="7"
[2026-01-08 19:38:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 19:38:29] ANSI_COLOR="0;31"
[2026-01-08 19:38:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 19:38:29] HOME_URL="https://www.centos.org/"
[2026-01-08 19:38:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 19:38:29] 
[2026-01-08 19:38:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 19:38:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 19:38:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 19:38:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 19:38:29] 
[2026-01-08 19:38:29] 2026-01-08 18:37:37,939 | INFO     | ***************************************
[2026-01-08 19:38:29] 2026-01-08 18:37:38,442 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-08 19:38:29] 2026-01-08 18:37:38,676 | INFO     | sufficient remaining disk space (497106812928 B)
[2026-01-08 19:38:29] 2026-01-08 18:37:38,676 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 19:38:29] 2026-01-08 18:37:38,676 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 19:38:29] 2026-01-08 18:37:38,676 | INFO     | update_server=False
[2026-01-08 19:38:29] 2026-01-08 18:37:38,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 19:38:29] 2026-01-08 18:37:38,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 19:38:29] 2026-01-08 18:37:39,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 19:38:29] 2026-01-08 18:37:39,124 | INFO     | all payload control threads have been joined
[2026-01-08 19:38:29] 2026-01-08 18:37:39,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:38:29] 2026-01-08 18:37:39,262 | INFO     | aborting loop
[2026-01-08 19:38:29] 2026-01-08 18:37:39,631 | INFO     | all job control threads have been joined
[2026-01-08 19:38:29] 2026-01-08 18:37:39,670 | INFO     | all data control threads have been joined
[2026-01-08 19:38:29] 2026-01-08 18:37:39,682 | INFO     | [job] retrieve thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:39,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:38:29] 2026-01-08 18:37:40,014 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,102 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,130 | INFO     | [payload] control thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,138 | INFO     | [job] validate thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,268 | INFO     | [job] job monitor thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,371 | INFO     | [payload] failed_post thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,576 | INFO     | [payload] validate_post thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,637 | INFO     | [job] control thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,676 | INFO     | [data] control thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,684 | INFO     | [data] copytool_out thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,739 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,870 | INFO     | [data] copytool_in thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:40,997 | INFO     | [job] queue monitor thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:41,059 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:37:43,084 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 19:38:29] 2026-01-08 18:38:07,311 | INFO     | PID=6749 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 19:38:29] 2026-01-08 18:38:07,311 | INFO     | .. there are 2 such processes running
[2026-01-08 19:38:29] 2026-01-08 18:38:07,312 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 19:38:29] 2026-01-08 18:38:07,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 19:38:29] 2026-01-08 18:38:07,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 19:38:29] 2026-01-08 18:38:17,944 | INFO     | [monitor] cgroup control has ended
[2026-01-08 19:38:29] 2026-01-08 18:38:18,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010190157632)>', '<ExcThread(monitor, started 140009592043264)>']
[2026-01-08 19:38:29] 2026-01-08 18:38:19,384 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 19:38:29] 2026-01-08 18:38:19,384 | INFO     | [monitor] control thread has ended
[2026-01-08 19:38:29] 2026-01-08 18:38:23,991 | INFO     | all workflow threads have been joined
[2026-01-08 19:38:29] 2026-01-08 18:38:23,991 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 19:38:29] 2026-01-08 18:38:23,992 | INFO     | traces error code: 0
[2026-01-08 19:38:29] 2026-01-08 18:38:23,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 19:38:29] 2026-01-08 18:38:24,454 [wrapper] ==== pilot stdout END ====
[2026-01-08 19:38:29] 2026-01-08 18:38:24,570 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 19:38:29] 2026-01-08 18:38:24,660 [wrapper] pilotpid: 6749
[2026-01-08 19:38:29] 2026-01-08 18:38:24,774 [wrapper] Pilot exit status: 0
[2026-01-08 19:38:29] 2026-01-08 18:38:24,810 [wrapper] pandaids: 6962922695
[2026-01-08 19:38:29] 2026-01-08 18:38:25,633 [wrapper] cleanup supervisor_pilot 12540 6750
[2026-01-08 19:38:29] 2026-01-08 18:38:25,753 [wrapper] Test setup, not cleaning
[2026-01-08 19:38:29] 2026-01-08 18:38:25,906 [wrapper] apfmon messages muted
[2026-01-08 19:38:29] 2026-01-08 18:38:26,040 [wrapper] ==== wrapper stdout END ====
[2026-01-08 19:38:29] 2026-01-08 18:38:26,121 [wrapper] ==== wrapper stderr END ====
[2026-01-08 19:38:29]  *** Error codes and diagnostics ***
[2026-01-08 19:38:29]     "exeErrorCode": 0,
[2026-01-08 19:38:29]     "exeErrorDiag": "",
[2026-01-08 19:38:29]     "pilotErrorCode": 0,
[2026-01-08 19:38:29]     "pilotErrorDiag": "",
[2026-01-08 19:38:29]  *** Listing of results directory ***
[2026-01-08 19:38:29] total 442944
[2026-01-08 19:38:29] -rwx------. 1 boinc boinc     36322 Jan  8 09:20 runpilot2-wrapper.sh
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:27 queuedata.json
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc       100 Jan  8 13:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 19:38:29] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 13:38 run_atlas
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc       105 Jan  8 13:38 job.xml
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc      6390 Jan  8 13:38 init_data.xml
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc 225025250 Jan  8 13:38 EVNT.47898824._000852.pool.root.1
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:38 start_atlas.sh
[2026-01-08 19:38:29] drwxrwx--x. 2 boinc boinc        68 Jan  8 13:38 shared
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc    592402 Jan  8 13:38 input.tar.gz
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc         0 Jan  8 13:38 boinc_lockfile
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc      2518 Jan  8 13:38 pandaJob.out
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc    989835 Jan  8 13:42 agis_schedconf.cvmfs.json
[2026-01-08 19:38:29] drwx------. 5 boinc boinc      4096 Jan  8 13:42 pilot3
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc 217904487 Jan  8 19:34 HITS.47898826._022130.pool.root.1
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc       531 Jan  8 19:34 boinc_task_state.xml
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc      1012 Jan  8 19:35 memory_monitor_summary.json
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc   1516240 Jan  8 19:35 agis_ddmendpoints.agis.ALL.json
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc    539580 Jan  8 19:35 log.47898826._022130.job.log.tgz.1
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc      7772 Jan  8 19:37 heartbeat.json
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc      8192 Jan  8 19:38 boinc_mmap_file
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc        28 Jan  8 19:38 wrapper_checkpoint.txt
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc        95 Jan  8 19:38 pilot_heartbeat.json
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc      4883 Jan  8 19:38 pilotlog.txt
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc   2832961 Jan  8 19:38 log.47898826._022130.job.log.1
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc       357 Jan  8 19:38 output.list
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc       620 Jan  8 19:38 runtime_log
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc   3389440 Jan  8 19:38 result.tar.gz
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc      8817 Jan  8 19:38 runtime_log.err
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc       657 Jan  8 19:38 1P2MDmIR0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY3jKDmbMczxn.diag
[2026-01-08 19:38:29] -rw-r--r--. 1 boinc boinc     20769 Jan  8 19:38 stderr.txt
[2026-01-08 19:38:29] HITS file was successfully produced:
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc 217904487 Jan  8 19:34 shared/HITS.pool.root.1
[2026-01-08 19:38:29]  *** Contents of shared directory: ***
[2026-01-08 19:38:29] total 436460
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc 225025250 Jan  8 13:38 ATLAS.root_0
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:38 start_atlas.sh
[2026-01-08 19:38:29] -rw-r--r--. 2 boinc boinc    592402 Jan  8 13:38 input.tar.gz
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc 217904487 Jan  8 19:34 HITS.pool.root.1
[2026-01-08 19:38:29] -rw-------. 1 boinc boinc   3389440 Jan  8 19:38 result.tar.gz
19:38:31 (3000): run_atlas exited; CPU time 78141.484782
19:38:31 (3000): called boinc_finish(0)

</stderr_txt>
]]>

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