Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:48:25 (30731): wrapper (7.7.26015): starting
23:48:25 (30731): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:48:25] Arguments: --nthreads 8
[2026-01-08 23:48:25] Threads: 8
[2026-01-08 23:48:25] Checking for CVMFS
[2026-01-08 23:48:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:48:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:48:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:48:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:48:26] 2.11.2.0 15502 34578 99328 154922 0 142 23837974 25165824 758 130560 0 16297198 99.866 9155413 3624 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:48:26] CVMFS is ok
[2026-01-08 23:48:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:48:26] Checking for apptainer binary...
[2026-01-08 23:48:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:48:26] Running /usr/bin/apptainer --version
[2026-01-08 23:48:26] apptainer version 1.3.2-1.el7
[2026-01-08 23:48:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:48:27] cg-vwn488.simple-grid.lan
[2026-01-08 23:48:27] apptainer works
[2026-01-08 23:48:27] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:48:27] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:48:27] Starting ATLAS job with PandaID=6962922661
[2026-01-08 23:48:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:27:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:27:26] 2026-01-09 04:26:14,970 | INFO     | time since job start (20250s) is within the limit (174528.0s)
[2026-01-09 05:27:26] 2026-01-09 04:26:15,213 | INFO     | monitor loop #1360: job 0:6962922661 is in state 'finished'
[2026-01-09 05:27:26] 2026-01-09 04:26:15,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:27:26] 2026-01-09 04:26:16,975 | INFO     | time since job start (20252s) is within the limit (174528.0s)
[2026-01-09 05:27:26] 2026-01-09 04:26:17,716 | INFO     | monitor loop #1361: job 0:6962922661 is in state 'finished'
[2026-01-09 05:27:26] 2026-01-09 04:26:17,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,319 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 05:27:26] 2026-01-09 04:26:18,320 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 05:27:26] 2026-01-09 04:26:18,321 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6962922661/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,322 | INFO     | extracted standard info from prmon json
[2026-01-09 05:27:26] 2026-01-09 04:26:18,322 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:27:26] 2026-01-09 04:26:18,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:27:26] 2026-01-09 04:26:18,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:27:26] 2026-01-09 04:26:18,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:27:26] 2026-01-09 04:26:18,329 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:27:26] 2026-01-09 04:26:18,330 | INFO     | sum of square deviations: 11347200663.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,333 | INFO     | sum of deviations: 70515167106.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,333 | INFO     | mean x: 1767922654.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,333 | INFO     | mean y: 2470692.7891566264
[2026-01-09 05:27:26] 2026-01-09 04:26:18,334 | INFO     | intersect: -10983971260.163078
[2026-01-09 05:27:26] 2026-01-09 04:26:18,334 | INFO     | chi2: 3.3378758081223885
[2026-01-09 05:27:26] 2026-01-09 04:26:18,335 | INFO     | sum of square deviations: 10842205148.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,338 | INFO     | sum of deviations: 91055762925.00002
[2026-01-09 05:27:26] 2026-01-09 04:26:18,338 | INFO     | mean x: 1767922502.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,338 | INFO     | mean y: 2476814.3333333335
[2026-01-09 05:27:26] 2026-01-09 04:26:18,338 | INFO     | intersect: -14845013157.90537
[2026-01-09 05:27:26] 2026-01-09 04:26:18,339 | INFO     | chi2: 2.5733842191422003
[2026-01-09 05:27:26] 2026-01-09 04:26:18,339 | INFO     | current chi2=2.5733842191422003 (change=22.90353604888097 %)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,339 | INFO     | right removable region: 326
[2026-01-09 05:27:26] 2026-01-09 04:26:18,340 | INFO     | sum of square deviations: 10842205148.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,343 | INFO     | sum of deviations: -9834936547.999996
[2026-01-09 05:27:26] 2026-01-09 04:26:18,343 | INFO     | mean x: 1767922807.0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,343 | INFO     | mean y: 2494876.351681957
[2026-01-09 05:27:26] 2026-01-09 04:26:18,343 | INFO     | intersect: 1606173131.0298274
[2026-01-09 05:27:26] 2026-01-09 04:26:18,344 | INFO     | chi2: 0.8809430237507457
[2026-01-09 05:27:26] 2026-01-09 04:26:18,344 | INFO     | current chi2=0.8809430237507457 (change=73.60767522844743 %)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,344 | INFO     | sum of square deviations: 10352419220.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,347 | INFO     | sum of deviations: -12434256439.499992
[2026-01-09 05:27:26] 2026-01-09 04:26:18,348 | INFO     | mean x: 1767922959.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,348 | INFO     | mean y: 2495657.1894409936
[2026-01-09 05:27:26] 2026-01-09 04:26:18,348 | INFO     | intersect: 2125942068.649683
[2026-01-09 05:27:26] 2026-01-09 04:26:18,348 | INFO     | chi2: 0.8411442075437026
[2026-01-09 05:27:26] 2026-01-09 04:26:18,348 | INFO     | current chi2=0.8411442075437026 (change=4.517751447487921 %)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,349 | INFO     | left removable region: 20
[2026-01-09 05:27:26] 2026-01-09 04:26:18,349 | INFO     | sum of square deviations: 8884603792.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,352 | INFO     | sum of deviations: 18821227279.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,352 | INFO     | mean x: 1767923081.5
[2026-01-09 05:27:26] 2026-01-09 04:26:18,352 | INFO     | mean y: 2498930.911764706
[2026-01-09 05:27:26] 2026-01-09 04:26:18,352 | INFO     | intersect: -3742685762.374658
[2026-01-09 05:27:26] 2026-01-09 04:26:18,353 | INFO     | chi2: 0.0011074633536824177
[2026-01-09 05:27:26] 2026-01-09 04:26:18,353 | INFO     | current memory leak: 2.12 B/s (using 306 data points, chi2=0.00)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,353 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | ..............................
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . Timing measurements:
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . get job = 0 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . initial setup = 2 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . payload setup = 8 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . stage-in = 0 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . payload execution = 20213 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . stage-out = 1 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,354 | INFO     | . log creation = 0 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,355 | INFO     | ..............................
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | 
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | job summary report
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | --------------------------------------------------
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | PanDA job id: 6962922661
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | task id: 47898826
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | errors: (none)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,460 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | pilot state: finished 
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | transexitcode: 0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | exeerrorcode: 0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | exeerrordiag: 
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | exitcode: 0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | exitmsg: OK
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | cpuconsumptiontime: 75835 s
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | nevents: 400
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | neventsw: 0
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | pid: 8517
[2026-01-09 05:27:26] 2026-01-09 04:26:18,461 | INFO     | pgrp: 8517
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | corecount: 8
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | event service: False
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | sizes: {0: 2283797, 1: 2283996, 7: 2284258, 12: 2284286, 20225: 2316899, 20228: 2325897, 20230: 2326081, 20237: 2326275}
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | --------------------------------------------------
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | 
[2026-01-09 05:27:26] 2026-01-09 04:26:18,462 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | job 6962922661 has completed (purged errors)
[2026-01-09 05:27:26] 2026-01-09 04:26:18,501 | INFO     | overall cleanup function is called
[2026-01-09 05:27:26] 2026-01-09 04:26:19,509 | INFO     | --- collectZombieJob: --- 10, [8517]
[2026-01-09 05:27:26] 2026-01-09 04:26:19,510 | INFO     | zombie collector waiting for pid 8517
[2026-01-09 05:27:26] 2026-01-09 04:26:19,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:27:26] 2026-01-09 04:26:19,510 | INFO     | collected zombie processes
[2026-01-09 05:27:26] 2026-01-09 04:26:19,510 | INFO     | will attempt to kill all subprocesses of pid=8517
[2026-01-09 05:27:26] 2026-01-09 04:26:19,569 | INFO     | process IDs to be killed: [8517] (in reverse order)
[2026-01-09 05:27:26] 2026-01-09 04:26:19,622 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:27:26] 2026-01-09 04:26:19,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:27:26] 2026-01-09 04:26:19,624 | INFO     | did not find any defunct processes belonging to 8517
[2026-01-09 05:27:26] 2026-01-09 04:26:19,625 | INFO     | did not find any defunct processes belonging to 8517
[2026-01-09 05:27:26] 2026-01-09 04:26:19,625 | INFO     | ready for new job
[2026-01-09 05:27:26] 2026-01-09 04:26:19,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:27:26] 2026-01-09 04:26:19,628 | INFO     | ***************************************
[2026-01-09 05:27:26] 2026-01-09 04:26:19,628 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:27:26] 2026-01-09 04:26:19,628 | INFO     | ***************************************
[2026-01-09 05:27:26] 2026-01-09 04:26:19,628 | INFO     | 
[2026-01-09 05:27:26] 2026-01-09 04:26:19,629 | INFO     | pilot is running in a VM
[2026-01-09 05:27:26] 2026-01-09 04:26:19,629 | INFO     | architecture information:
[2026-01-09 05:27:26] 2026-01-09 04:26:19,629 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:27:26] 2026-01-09 04:26:19,656 | INFO     | cat /etc/os-release:
[2026-01-09 05:27:26] NAME="CentOS Linux"
[2026-01-09 05:27:26] VERSION="7 (Core)"
[2026-01-09 05:27:26] ID="centos"
[2026-01-09 05:27:26] ID_LIKE="rhel fedora"
[2026-01-09 05:27:26] VERSION_ID="7"
[2026-01-09 05:27:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:27:26] ANSI_COLOR="0;31"
[2026-01-09 05:27:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:27:26] HOME_URL="https://www.centos.org/"
[2026-01-09 05:27:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:27:26] 
[2026-01-09 05:27:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:27:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:27:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:27:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:27:26] 
[2026-01-09 05:27:26] 2026-01-09 04:26:19,657 | INFO     | ***************************************
[2026-01-09 05:27:26] 2026-01-09 04:26:20,160 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-09 05:27:26] 2026-01-09 04:26:20,181 | INFO     | sufficient remaining disk space (498036899840 B)
[2026-01-09 05:27:26] 2026-01-09 04:26:20,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:27:26] 2026-01-09 04:26:20,182 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:27:26] 2026-01-09 04:26:20,182 | INFO     | update_server=False
[2026-01-09 05:27:26] 2026-01-09 04:26:20,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:27:26] 2026-01-09 04:26:20,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:27:26] 2026-01-09 04:26:20,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:27:26] 2026-01-09 04:26:20,219 | INFO     | all payload control threads have been joined
[2026-01-09 05:27:26] 2026-01-09 04:26:20,220 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 05:27:26] 2026-01-09 04:26:20,220 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 05:27:26] 2026-01-09 04:26:20,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:27:26] 2026-01-09 04:26:20,220 | INFO     | will abort loop
[2026-01-09 05:27:26] 2026-01-09 04:26:20,316 | INFO     | all job control threads have been joined
[2026-01-09 05:27:26] 2026-01-09 04:26:20,959 | INFO     | all data control threads have been joined
[2026-01-09 05:27:26] 2026-01-09 04:26:21,188 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,189 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,223 | INFO     | [payload] control thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,226 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,322 | INFO     | [job] control thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,358 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,626 | INFO     | [job] validate thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,674 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,688 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,965 | INFO     | [data] control thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:21,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:27:26] 2026-01-09 04:26:22,078 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:22,159 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:22,189 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:22,471 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:25,978 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:30,268 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:27:26] 2026-01-09 04:26:31,274 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:27:26] 2026-01-09 04:26:50,065 | INFO     | PID=2061 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 05:27:26] 2026-01-09 04:26:50,066 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:27:26] 2026-01-09 04:26:50,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:27:26] 2026-01-09 04:26:50,067 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:27:26] 2026-01-09 04:27:19,216 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:27:26] 2026-01-09 04:27:21,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047484041024)>', '<ExcThread(monitor, started 140046912964352)>']
[2026-01-09 05:27:26] 2026-01-09 04:27:22,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:27:26] 2026-01-09 04:27:22,117 | INFO     | [monitor] control thread has ended
[2026-01-09 05:27:26] 2026-01-09 04:27:26,183 | INFO     | all workflow threads have been joined
[2026-01-09 05:27:26] 2026-01-09 04:27:26,184 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:27:26] 2026-01-09 04:27:26,184 | INFO     | traces error code: 0
[2026-01-09 05:27:26] 2026-01-09 04:27:26,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:27:26] 2026-01-09 04:27:26,327 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:27:26] 2026-01-09 04:27:26,332 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:27:26] 2026-01-09 04:27:26,338 [wrapper] pilotpid: 2061
[2026-01-09 05:27:26] 2026-01-09 04:27:26,342 [wrapper] Pilot exit status: 0
[2026-01-09 05:27:26] 2026-01-09 04:27:26,366 [wrapper] pandaids: 6962922661
[2026-01-09 05:27:26] 2026-01-09 04:27:26,404 [wrapper] cleanup supervisor_pilot  8738 2062
[2026-01-09 05:27:26] 2026-01-09 04:27:26,408 [wrapper] Test setup, not cleaning
[2026-01-09 05:27:26] 2026-01-09 04:27:26,413 [wrapper] apfmon messages muted
[2026-01-09 05:27:26] 2026-01-09 04:27:26,417 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:27:26] 2026-01-09 04:27:26,425 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:27:26]  *** Error codes and diagnostics ***
[2026-01-09 05:27:26]     "exeErrorCode": 0,
[2026-01-09 05:27:26]     "exeErrorDiag": "",
[2026-01-09 05:27:26]     "pilotErrorCode": 0,
[2026-01-09 05:27:26]     "pilotErrorDiag": "",
[2026-01-09 05:27:26]  *** Listing of results directory ***
[2026-01-09 05:27:26] total 449568
[2026-01-09 05:27:26] -rwx------. 1 boinc boinc     36322 Jan  8 09:20 runpilot2-wrapper.sh
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:27 queuedata.json
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:27:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:48 run_atlas
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:48 job.xml
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc      6389 Jan  8 23:48 init_data.xml
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc 225541375 Jan  8 23:48 EVNT.47898824._000849.pool.root.1
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:48 start_atlas.sh
[2026-01-09 05:27:26] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:48 shared
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc    592400 Jan  8 23:48 input.tar.gz
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:48 boinc_lockfile
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc      2518 Jan  8 23:48 pandaJob.out
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc    989837 Jan  8 23:48 agis_schedconf.cvmfs.json
[2026-01-09 05:27:26] drwx------. 5 boinc boinc      4096 Jan  8 23:48 pilot3
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc 224365159 Jan  9 05:25 HITS.47898826._022096.pool.root.1
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc       531 Jan  9 05:25 boinc_task_state.xml
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc      1018 Jan  9 05:26 memory_monitor_summary.json
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc   1516240 Jan  9 05:26 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc    552896 Jan  9 05:26 log.47898826._022096.job.log.tgz.1
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc      7775 Jan  9 05:26 heartbeat.json
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc        95 Jan  9 05:26 pilot_heartbeat.json
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc      8192 Jan  9 05:27 boinc_mmap_file
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc        28 Jan  9 05:27 wrapper_checkpoint.txt
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc      5066 Jan  9 05:27 pilotlog.txt
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc   2723989 Jan  9 05:27 log.47898826._022096.job.log.1
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc       357 Jan  9 05:27 output.list
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc       620 Jan  9 05:27 runtime_log
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc   3297280 Jan  9 05:27 result.tar.gz
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc      8817 Jan  9 05:27 runtime_log.err
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc       657 Jan  9 05:27 JJPMDmIR0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm22jKDmAlTfXo.diag
[2026-01-09 05:27:26] -rw-r--r--. 1 boinc boinc     20936 Jan  9 05:27 stderr.txt
[2026-01-09 05:27:26] HITS file was successfully produced:
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc 224365159 Jan  9 05:25 shared/HITS.pool.root.1
[2026-01-09 05:27:26]  *** Contents of shared directory: ***
[2026-01-09 05:27:26] total 443180
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc 225541375 Jan  8 23:48 ATLAS.root_0
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:48 start_atlas.sh
[2026-01-09 05:27:26] -rw-r--r--. 2 boinc boinc    592400 Jan  8 23:48 input.tar.gz
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc 224365159 Jan  9 05:25 HITS.pool.root.1
[2026-01-09 05:27:26] -rw-------. 1 boinc boinc   3297280 Jan  9 05:27 result.tar.gz
05:27:28 (30731): run_atlas exited; CPU time 76031.548061
05:27:28 (30731): called boinc_finish(0)

</stderr_txt>
]]>

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