Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:17:49 (3330632): wrapper (7.7.26015): starting
22:17:49 (3330632): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 22:17:49] Arguments: --nthreads 2
[2026-01-08 22:17:49] Threads: 2
[2026-01-08 22:17:49] Checking for CVMFS
[2026-01-08 22:17:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 22:17:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 22:17:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 22:17:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 22:17:49] 2.9.2.0 3288549 174 49856 154920 1 56 19621516 36864000 0 130560 0 82945 99.986 6787 32629 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 22:17:49] CVMFS is ok
[2026-01-08 22:17:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 22:17:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 22:17:49] Further information can be found at the LHC@home message board.
[2026-01-08 22:17:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 22:17:49] Checking for apptainer binary...
[2026-01-08 22:17:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 22:17:49] Running /usr/bin/apptainer --version
[2026-01-08 22:17:50] apptainer version 1.4.1-1.1
[2026-01-08 22:17:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 22:17:50] thA369
[2026-01-08 22:17:50] apptainer works
[2026-01-08 22:17:50] Set ATHENA_PROC_NUMBER=2
[2026-01-08 22:17:50] Set ATHENA_CORE_NUMBER=2
[2026-01-08 22:17:50] Starting ATLAS job with PandaID=6962922767
[2026-01-08 22:17:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 01:21:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 01:21:24] 2026-01-09 00:20:18,476 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 01:21:24] 2026-01-09 00:20:18,476 | INFO     | job 6962922767 has completed (purged errors)
[2026-01-09 01:21:24] 2026-01-09 00:20:18,476 | INFO     | overall cleanup function is called
[2026-01-09 01:21:24] 2026-01-09 00:20:19,480 | INFO     | --- collectZombieJob: --- 10, [3340792]
[2026-01-09 01:21:24] 2026-01-09 00:20:19,481 | INFO     | zombie collector waiting for pid 3340792
[2026-01-09 01:21:24] 2026-01-09 00:20:19,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 01:21:24] 2026-01-09 00:20:19,481 | INFO     | collected zombie processes
[2026-01-09 01:21:24] 2026-01-09 00:20:19,481 | INFO     | will attempt to kill all subprocesses of pid=3340792
[2026-01-09 01:21:24] 2026-01-09 00:20:19,550 | INFO     | process IDs to be killed: [3340792] (in reverse order)
[2026-01-09 01:21:24] 2026-01-09 00:20:19,582 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 01:21:24] 2026-01-09 00:20:19,582 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 01:21:24] 2026-01-09 00:20:19,584 | INFO     | did not find any defunct processes belonging to 3340792
[2026-01-09 01:21:24] 2026-01-09 00:20:19,586 | INFO     | did not find any defunct processes belonging to 3340792
[2026-01-09 01:21:24] 2026-01-09 00:20:19,586 | INFO     | ready for new job
[2026-01-09 01:21:24] 2026-01-09 00:20:19,586 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | ***************************************
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | ***************************************
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | 
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | architecture information:
[2026-01-09 01:21:24] 2026-01-09 00:20:19,587 | INFO     | executing command: cat /etc/os-release
[2026-01-09 01:21:24] 2026-01-09 00:20:19,597 | INFO     | cat /etc/os-release:
[2026-01-09 01:21:24] NAME="CentOS Linux"
[2026-01-09 01:21:24] VERSION="7 (Core)"
[2026-01-09 01:21:24] ID="centos"
[2026-01-09 01:21:24] ID_LIKE="rhel fedora"
[2026-01-09 01:21:24] VERSION_ID="7"
[2026-01-09 01:21:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 01:21:24] ANSI_COLOR="0;31"
[2026-01-09 01:21:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 01:21:24] HOME_URL="https://www.centos.org/"
[2026-01-09 01:21:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 01:21:24] 
[2026-01-09 01:21:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 01:21:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 01:21:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 01:21:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 01:21:24] 
[2026-01-09 01:21:24] 2026-01-09 00:20:19,597 | INFO     | ***************************************
[2026-01-09 01:21:24] 2026-01-09 00:20:20,100 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 01:21:24] 2026-01-09 00:20:20,112 | INFO     | sufficient remaining disk space (341014740992 B)
[2026-01-09 01:21:24] 2026-01-09 00:20:20,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 01:21:24] 2026-01-09 00:20:20,113 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 01:21:24] 2026-01-09 00:20:20,113 | INFO     | update_server=False
[2026-01-09 01:21:24] 2026-01-09 00:20:20,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 01:21:24] 2026-01-09 00:20:20,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:21:24] 2026-01-09 00:20:20,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:21:24] 2026-01-09 00:20:20,510 | INFO     | aborting loop
[2026-01-09 01:21:24] 2026-01-09 00:20:20,551 | INFO     | all payload control threads have been joined
[2026-01-09 01:21:24] 2026-01-09 00:20:20,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 01:21:24] 2026-01-09 00:20:20,939 | INFO     | all data control threads have been joined
[2026-01-09 01:21:24] 2026-01-09 00:20:21,118 | INFO     | [job] queue monitor thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,118 | INFO     | [job] retrieve thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,154 | INFO     | all job control threads have been joined
[2026-01-09 01:21:24] 2026-01-09 00:20:21,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 01:21:24] 2026-01-09 00:20:21,495 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,515 | INFO     | [job] job monitor thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,557 | INFO     | [payload] control thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,616 | INFO     | [payload] failed_post thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:21,942 | INFO     | [data] control thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,159 | INFO     | [job] control thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,217 | INFO     | [data] copytool_in thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,430 | INFO     | [payload] validate_post thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,457 | INFO     | [job] validate thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,543 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,561 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:22,679 | INFO     | [data] copytool_out thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:25,219 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:30,799 | INFO     | job.realtimelogging is not enabled
[2026-01-09 01:21:24] 2026-01-09 00:20:31,805 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 01:21:24] 2026-01-09 00:20:49,977 | INFO     | PID=3334353 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 01:21:24] 2026-01-09 00:20:49,977 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 01:21:24] 2026-01-09 00:20:49,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 01:21:24] 2026-01-09 00:20:49,978 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 01:21:24] 2026-01-09 00:21:18,231 | INFO     | [monitor] cgroup control has ended
[2026-01-09 01:21:24] 2026-01-09 00:21:19,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336714716992)>', '<ExcThread(monitor, started 140336219277056)>']
[2026-01-09 01:21:24] 2026-01-09 00:21:20,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 01:21:24] 2026-01-09 00:21:20,116 | INFO     | [monitor] control thread has ended
[2026-01-09 01:21:24] 2026-01-09 00:21:24,832 | INFO     | all workflow threads have been joined
[2026-01-09 01:21:24] 2026-01-09 00:21:24,833 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 01:21:24] 2026-01-09 00:21:24,833 | INFO     | traces error code: 0
[2026-01-09 01:21:24] 2026-01-09 00:21:24,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 01:21:24] 2026-01-09 00:21:24,880 [wrapper] ==== pilot stdout END ====
[2026-01-09 01:21:24] 2026-01-09 00:21:24,882 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 01:21:24] 2026-01-09 00:21:24,885 [wrapper] pilotpid: 3334353
[2026-01-09 01:21:24] 2026-01-09 00:21:24,887 [wrapper] Pilot exit status: 0
[2026-01-09 01:21:24] 2026-01-09 00:21:24,893 [wrapper] pandaids: 6962922767
[2026-01-09 01:21:24] 2026-01-09 00:21:24,914 [wrapper] cleanup supervisor_pilot 3367906 3334354
[2026-01-09 01:21:24] 2026-01-09 00:21:24,917 [wrapper] Test setup, not cleaning
[2026-01-09 01:21:24] 2026-01-09 00:21:24,919 [wrapper] apfmon messages muted
[2026-01-09 01:21:24] 2026-01-09 00:21:24,921 [wrapper] ==== wrapper stdout END ====
[2026-01-09 01:21:24] 2026-01-09 00:21:24,924 [wrapper] ==== wrapper stderr END ====
[2026-01-09 01:21:24]  *** Error codes and diagnostics ***
[2026-01-09 01:21:24]     "exeErrorCode": 0,
[2026-01-09 01:21:24]     "exeErrorDiag": "",
[2026-01-09 01:21:24]     "pilotErrorCode": 0,
[2026-01-09 01:21:24]     "pilotErrorDiag": "",
[2026-01-09 01:21:24]  *** Listing of results directory ***
[2026-01-09 01:21:24] total 436916
[2026-01-09 01:21:24] -rwx------ 1 boinc boinc     36322 Jan  8 09:20 runpilot2-wrapper.sh
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:23 queuedata.json
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc       100 Jan  8 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 01:21:24] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 22:17 run_atlas
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc       105 Jan  8 22:17 job.xml
[2026-01-09 01:21:24] -rw-r--r-- 2 boinc boinc 223825144 Jan  8 22:17 EVNT.47898824._000856.pool.root.1
[2026-01-09 01:21:24] drwxrwx--x 2 boinc boinc      4096 Jan  8 22:17 shared
[2026-01-09 01:21:24] -rw-r--r-- 2 boinc boinc    592399 Jan  8 22:17 input.tar.gz
[2026-01-09 01:21:24] -rw-r--r-- 2 boinc boinc     15847 Jan  8 22:17 start_atlas.sh
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc         0 Jan  8 22:17 boinc_setup_complete
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc      6205 Jan  8 22:17 init_data.xml
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc         0 Jan  8 22:17 boinc_lockfile
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc      2517 Jan  8 22:17 pandaJob.out
[2026-01-09 01:21:24] -rw------- 1 boinc boinc    989845 Jan  8 22:18 agis_schedconf.cvmfs.json
[2026-01-09 01:21:24] drwx------ 5 boinc boinc      4096 Jan  8 22:18 pilot3
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc       530 Jan  9 01:19 boinc_task_state.xml
[2026-01-09 01:21:24] -rw------- 1 boinc boinc 215953626 Jan  9 01:19 HITS.47898826._022202.pool.root.1
[2026-01-09 01:21:24] -rw------- 1 boinc boinc      1017 Jan  9 01:20 memory_monitor_summary.json
[2026-01-09 01:21:24] -rw------- 1 boinc boinc   1516240 Jan  9 01:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 01:21:24] -rw------- 1 boinc boinc    312007 Jan  9 01:20 log.47898826._022202.job.log.tgz.1
[2026-01-09 01:21:24] -rw------- 1 boinc boinc        95 Jan  9 01:20 pilot_heartbeat.json
[2026-01-09 01:21:24] -rw------- 1 boinc boinc      7755 Jan  9 01:20 heartbeat.json
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc        28 Jan  9 01:21 wrapper_checkpoint.txt
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc      8192 Jan  9 01:21 boinc_mmap_file
[2026-01-09 01:21:24] -rw------- 1 boinc boinc      4824 Jan  9 01:21 pilotlog.txt
[2026-01-09 01:21:24] -rw------- 1 boinc boinc   1548005 Jan  9 01:21 log.47898826._022202.job.log.1
[2026-01-09 01:21:24] -rw------- 1 boinc boinc       357 Jan  9 01:21 output.list
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc       620 Jan  9 01:21 runtime_log
[2026-01-09 01:21:24] -rw------- 1 boinc boinc   1884160 Jan  9 01:21 result.tar.gz
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc      8898 Jan  9 01:21 runtime_log.err
[2026-01-09 01:21:24] -rw------- 1 boinc boinc       661 Jan  9 01:21 l0PNDmUR0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjseKDmxuufgm.diag
[2026-01-09 01:21:24] -rw-r--r-- 1 boinc boinc     10998 Jan  9 01:21 stderr.txt
[2026-01-09 01:21:24] HITS file was successfully produced:
[2026-01-09 01:21:24] -rw------- 1 boinc boinc 215953626 Jan  9 01:19 shared/HITS.pool.root.1
[2026-01-09 01:21:24]  *** Contents of shared directory: ***
[2026-01-09 01:21:25] total 431916
[2026-01-09 01:21:25] -rw-r--r-- 2 boinc boinc 223825144 Jan  8 22:17 ATLAS.root_0
[2026-01-09 01:21:25] -rw-r--r-- 2 boinc boinc    592399 Jan  8 22:17 input.tar.gz
[2026-01-09 01:21:25] -rw-r--r-- 2 boinc boinc     15847 Jan  8 22:17 start_atlas.sh
[2026-01-09 01:21:25] -rw------- 1 boinc boinc 215953626 Jan  9 01:19 HITS.pool.root.1
[2026-01-09 01:21:25] -rw------- 1 boinc boinc   1884160 Jan  9 01:21 result.tar.gz
01:21:26 (3330632): run_atlas exited; CPU time 21544.992343
01:21:26 (3330632): called boinc_finish(0)

</stderr_txt>
]]>

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