Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:54:32 (3669674): wrapper (7.7.26015): starting
22:54:32 (3669674): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 22:54:32] Arguments: --nthreads 12
[2026-01-08 22:54:32] Threads: 12
[2026-01-08 22:54:32] Checking for CVMFS
[2026-01-08 22:54:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 22:54:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 22:54:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 22:54:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 22:54:35] 2.13.3.0 9955 92851 138176 154929 3 338 30400940 32935936 24971 16776704 0 433049688 99.715 318391531 33195 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 22:54:35] CVMFS is ok
[2026-01-08 22:54:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 22:54:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 22:54:35] Further information can be found at the LHC@home message board.
[2026-01-08 22:54:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 22:54:35] Checking for apptainer binary...
[2026-01-08 22:54:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 22:54:35] Running /usr/bin/apptainer --version
[2026-01-08 22:54:36] apptainer version 1.4.5-2.el9
[2026-01-08 22:54:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 22:54:36] c-5-1.aglt2.org
[2026-01-08 22:54:36] apptainer works
[2026-01-08 22:54:37] Set ATHENA_PROC_NUMBER=12
[2026-01-08 22:54:37] Set ATHENA_CORE_NUMBER=12
[2026-01-08 22:54:37] Starting ATLAS job with PandaID=6962922534
[2026-01-08 22:54:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:41:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:41:32] 2026-01-09 17:40:38,263 | INFO     | extracted standard info from prmon json
[2026-01-09 12:41:32] 2026-01-09 17:40:38,263 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:41:32] 2026-01-09 17:40:38,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:41:32] 2026-01-09 17:40:38,264 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:41:32] 2026-01-09 17:40:38,264 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:41:32] 2026-01-09 17:40:38,605 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:41:32] 2026-01-09 17:40:38,607 | INFO     | sum of square deviations: 164177859097.69113
[2026-01-09 12:41:32] 2026-01-09 17:40:38,789 | INFO     | sum of deviations: -15342576667.707397
[2026-01-09 12:41:32] 2026-01-09 17:40:38,789 | INFO     | mean x: 1767955700.5562422
[2026-01-09 12:41:32] 2026-01-09 17:40:38,789 | INFO     | mean y: 2678907.8726823237
[2026-01-09 12:41:32] 2026-01-09 17:40:38,789 | INFO     | intersect: 167896045.1284084
[2026-01-09 12:41:32] 2026-01-09 17:40:38,846 | INFO     | chi2: 5.7538563664243
[2026-01-09 12:41:32] 2026-01-09 17:40:38,847 | INFO     | sum of square deviations: 161152766609.76495
[2026-01-09 12:41:32] 2026-01-09 17:40:39,322 | INFO     | sum of deviations: 267492878229.40628
[2026-01-09 12:41:32] 2026-01-09 17:40:39,322 | INFO     | mean x: 1767955548.063433
[2026-01-09 12:41:32] 2026-01-09 17:40:39,323 | INFO     | mean y: 2693166.8743781094
[2026-01-09 12:41:32] 2026-01-09 17:40:39,323 | INFO     | intersect: -2931885792.469898
[2026-01-09 12:41:32] 2026-01-09 17:40:39,324 | INFO     | chi2: 2.0386247953442704
[2026-01-09 12:41:32] 2026-01-09 17:40:39,324 | INFO     | current chi2=2.0386247953442704 (change=64.56941804734062 %)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,330 | INFO     | sum of square deviations: 158164873880.30084
[2026-01-09 12:41:32] 2026-01-09 17:40:39,372 | INFO     | time since job start (49508s) is within the limit (174528.0s)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,381 | INFO     | monitor loop #2130: job 0:6962922534 is in state 'finished'
[2026-01-09 12:41:32] 2026-01-09 17:40:39,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,413 | INFO     | sum of deviations: 265247665024.28165
[2026-01-09 12:41:32] 2026-01-09 17:40:39,413 | INFO     | mean x: 1767955395.5657072
[2026-01-09 12:41:32] 2026-01-09 17:40:39,414 | INFO     | mean y: 2693052.280350438
[2026-01-09 12:41:32] 2026-01-09 17:40:39,414 | INFO     | intersect: -2962225953.034208
[2026-01-09 12:41:32] 2026-01-09 17:40:39,415 | INFO     | chi2: 2.038695253075226
[2026-01-09 12:41:32] 2026-01-09 17:40:39,415 | INFO     | current chi2=2.038695253075226 (change=-0.0034561401939328953 %)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,415 | INFO     | right removable region: 798
[2026-01-09 12:41:32] 2026-01-09 17:40:39,416 | INFO     | sum of square deviations: 161152097435.5061
[2026-01-09 12:41:32] 2026-01-09 17:40:39,452 | INFO     | sum of deviations: -186963210168.55222
[2026-01-09 12:41:32] 2026-01-09 17:40:39,461 | INFO     | mean x: 1767955853.0659204
[2026-01-09 12:41:32] 2026-01-09 17:40:39,461 | INFO     | mean y: 2687539.7462686566
[2026-01-09 12:41:32] 2026-01-09 17:40:39,461 | INFO     | intersect: 2053810094.0634446
[2026-01-09 12:41:32] 2026-01-09 17:40:39,462 | INFO     | chi2: 3.89721629236536
[2026-01-09 12:41:32] 2026-01-09 17:40:39,462 | INFO     | current chi2=3.89721629236536 (change=32.267751501289865 %)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,463 | INFO     | sum of square deviations: 158163731823.169
[2026-01-09 12:41:32] 2026-01-09 17:40:39,521 | INFO     | sum of deviations: -196048101312.98627
[2026-01-09 12:41:32] 2026-01-09 17:40:39,521 | INFO     | mean x: 1767956005.5757196
[2026-01-09 12:41:32] 2026-01-09 17:40:39,521 | INFO     | mean y: 2688000.4543178976
[2026-01-09 12:41:32] 2026-01-09 17:40:39,521 | INFO     | intersect: 2194115922.030698
[2026-01-09 12:41:32] 2026-01-09 17:40:39,530 | INFO     | chi2: 3.8780516309945887
[2026-01-09 12:41:32] 2026-01-09 17:40:39,531 | INFO     | current chi2=3.8780516309945887 (change=0.49175257242752934 %)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,531 | INFO     | left removable region: 20
[2026-01-09 12:41:32] 2026-01-09 17:40:39,532 | INFO     | sum of square deviations: 146017258353.3793
[2026-01-09 12:41:32] 2026-01-09 17:40:39,581 | INFO     | sum of deviations: 135024619722.27379
[2026-01-09 12:41:32] 2026-01-09 17:40:39,582 | INFO     | mean x: 1767955975.0989716
[2026-01-09 12:41:32] 2026-01-09 17:40:39,582 | INFO     | mean y: 2699663.2172236503
[2026-01-09 12:41:32] 2026-01-09 17:40:39,582 | INFO     | intersect: -1632159023.4575744
[2026-01-09 12:41:32] 2026-01-09 17:40:39,583 | INFO     | chi2: 0.010547679318412339
[2026-01-09 12:41:32] 2026-01-09 17:40:39,583 | INFO     | current memory leak: 0.92 B/s (using 778 data points, chi2=0.01)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | could have reported an average CPU frequency of 2600 MHz (30 samples)
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | ..............................
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | . Timing measurements:
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | . get job = 0 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | . initial setup = 5 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | . payload setup = 34 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,593 | INFO     | . stage-in = 0 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,594 | INFO     | . payload execution = 49328 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,594 | INFO     | . stage-out = 20 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,594 | INFO     | . log creation = 4 s
[2026-01-09 12:41:32] 2026-01-09 17:40:39,594 | INFO     | ..............................
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | 
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | job summary report
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | --------------------------------------------------
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | PanDA job id: 6962922534
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | task id: 47898826
[2026-01-09 12:41:32] 2026-01-09 17:40:40,311 | INFO     | errors: (none)
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | pilot state: finished 
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | transexitcode: 0
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | exeerrorcode: 0
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | exeerrordiag: 
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | exitcode: 0
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | exitmsg: OK
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | cpuconsumptiontime: 71600 s
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | nevents: 400
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | neventsw: 0
[2026-01-09 12:41:32] 2026-01-09 17:40:40,312 | INFO     | pid: 3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | pgrp: 3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | corecount: 12
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | event service: False
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | sizes: {0: 2283742, 1: 2283826, 2: 2284025, 3: 2284025, 14: 2284053, 24: 2284499, 49367: 2329277, 49369: 2329276, 49391: 2338330, 49395: 2338386, 49457: 2338580}
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | --------------------------------------------------
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | 
[2026-01-09 12:41:32] 2026-01-09 17:40:40,313 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 12:41:32] 2026-01-09 17:40:41,120 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,120 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,121 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,122 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,122 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,128 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:41:32] 2026-01-09 17:40:41,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,128 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:41:32] 2026-01-09 17:40:41,128 | INFO     | job 6962922534 has completed (purged errors)
[2026-01-09 12:41:32] 2026-01-09 17:40:41,129 | INFO     | overall cleanup function is called
[2026-01-09 12:41:32] 2026-01-09 17:40:42,165 | INFO     | --- collectZombieJob: --- 10, [3683467]
[2026-01-09 12:41:32] 2026-01-09 17:40:42,166 | INFO     | zombie collector waiting for pid 3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:42,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:41:32] 2026-01-09 17:40:42,167 | INFO     | collected zombie processes
[2026-01-09 12:41:32] 2026-01-09 17:40:42,167 | INFO     | will attempt to kill all subprocesses of pid=3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:47,190 | INFO     | PID=3675459 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 12:41:32] 2026-01-09 17:40:47,190 | INFO     | .. there are 41 such processes running
[2026-01-09 12:41:32] 2026-01-09 17:40:47,326 | INFO     | process IDs to be killed: [3683467] (in reverse order)
[2026-01-09 12:41:32] 2026-01-09 17:40:49,603 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:41:32] 2026-01-09 17:40:49,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:41:32] 2026-01-09 17:40:49,830 | INFO     | did not find any defunct processes belonging to 3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:50,110 | INFO     | did not find any defunct processes belonging to 3683467
[2026-01-09 12:41:32] 2026-01-09 17:40:50,111 | INFO     | ready for new job
[2026-01-09 12:41:32] 2026-01-09 17:40:50,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:41:32] 2026-01-09 17:40:50,115 | INFO     | ***************************************
[2026-01-09 12:41:32] 2026-01-09 17:40:50,115 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:41:32] 2026-01-09 17:40:50,115 | INFO     | ***************************************
[2026-01-09 12:41:32] 2026-01-09 17:40:50,115 | INFO     | 
[2026-01-09 12:41:32] 2026-01-09 17:40:50,118 | INFO     | architecture information:
[2026-01-09 12:41:32] 2026-01-09 17:40:50,132 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:41:32] 2026-01-09 17:40:50,268 | INFO     | cat /etc/os-release:
[2026-01-09 12:41:32] NAME="CentOS Linux"
[2026-01-09 12:41:32] VERSION="7 (Core)"
[2026-01-09 12:41:32] ID="centos"
[2026-01-09 12:41:32] ID_LIKE="rhel fedora"
[2026-01-09 12:41:32] VERSION_ID="7"
[2026-01-09 12:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:41:32] ANSI_COLOR="0;31"
[2026-01-09 12:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:41:32] HOME_URL="https://www.centos.org/"
[2026-01-09 12:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:41:32] 
[2026-01-09 12:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:41:32] 
[2026-01-09 12:41:32] 2026-01-09 17:40:50,268 | INFO     | ***************************************
[2026-01-09 12:41:32] 2026-01-09 17:40:50,772 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 12:41:32] 2026-01-09 17:40:51,511 | INFO     | sufficient remaining disk space (74681679872 B)
[2026-01-09 12:41:32] 2026-01-09 17:40:51,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:41:32] 2026-01-09 17:40:51,526 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:41:32] 2026-01-09 17:40:51,526 | INFO     | update_server=False
[2026-01-09 12:41:32] 2026-01-09 17:40:51,526 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:41:32] 2026-01-09 17:40:51,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:41:32] 2026-01-09 17:40:51,540 | INFO     | aborting loop
[2026-01-09 12:41:32] 2026-01-09 17:40:51,550 | INFO     | all job control threads have been joined
[2026-01-09 12:41:32] 2026-01-09 17:40:51,888 | INFO     | all payload control threads have been joined
[2026-01-09 12:41:32] 2026-01-09 17:40:52,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:41:32] 2026-01-09 17:40:52,415 | INFO     | all data control threads have been joined
[2026-01-09 12:41:32] 2026-01-09 17:40:52,547 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:52,553 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:52,567 | INFO     | [job] control thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:52,908 | INFO     | [payload] control thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:52,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:41:32] 2026-01-09 17:40:53,063 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,120 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,170 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,438 | INFO     | [data] control thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,692 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,725 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,739 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:41:32] 2026-01-09 17:40:53,773 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,779 | INFO     | [job] validate thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:53,969 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:54,289 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:54,745 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:40:56,950 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:41:32] 2026-01-09 17:41:23,244 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:41:32] 2026-01-09 17:41:23,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477626971968)>', '<ExcThread(monitor, started 140476820739840)>']
[2026-01-09 12:41:32] 2026-01-09 17:41:24,836 | INFO     | PID=3675459 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 12:41:32] 2026-01-09 17:41:24,836 | INFO     | .. there are 41 such processes running
[2026-01-09 12:41:32] 2026-01-09 17:41:24,837 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:41:32] 2026-01-09 17:41:24,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:41:32] 2026-01-09 17:41:24,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:41:32] 2026-01-09 17:41:24,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:41:32] 2026-01-09 17:41:24,838 | INFO     | [monitor] control thread has ended
[2026-01-09 12:41:32] 2026-01-09 17:41:28,850 | INFO     | all workflow threads have been joined
[2026-01-09 12:41:32] 2026-01-09 17:41:28,850 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:41:32] 2026-01-09 17:41:28,850 | INFO     | traces error code: 0
[2026-01-09 12:41:32] 2026-01-09 17:41:28,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:41:32] 2026-01-09 17:41:29,761 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:41:32] 2026-01-09 17:41:29,809 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:41:32] 2026-01-09 17:41:29,868 [wrapper] pilotpid: 3675459
[2026-01-09 12:41:32] 2026-01-09 17:41:29,926 [wrapper] Pilot exit status: 0
[2026-01-09 12:41:32] 2026-01-09 17:41:30,116 [wrapper] pandaids: 6962922534
[2026-01-09 12:41:32] 2026-01-09 17:41:30,534 [wrapper] cleanup supervisor_pilot 3390670 3675460
[2026-01-09 12:41:32] 2026-01-09 17:41:30,559 [wrapper] Test setup, not cleaning
[2026-01-09 12:41:32] 2026-01-09 17:41:30,582 [wrapper] apfmon messages muted
[2026-01-09 12:41:32] 2026-01-09 17:41:30,600 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:41:32] 2026-01-09 17:41:30,619 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:41:32]  *** Error codes and diagnostics ***
[2026-01-09 12:41:32]     "exeErrorCode": 0,
[2026-01-09 12:41:32]     "exeErrorDiag": "",
[2026-01-09 12:41:32]     "pilotErrorCode": 0,
[2026-01-09 12:41:32]     "pilotErrorDiag": "",
[2026-01-09 12:41:32]  *** Listing of results directory ***
[2026-01-09 12:41:32] total 453976
[2026-01-09 12:41:32] -rwx------. 1 boincer umatlas     36322 Jan  8 03:08 runpilot2-wrapper.sh
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:16 queuedata.json
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas       100 Jan  8 22:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:41:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 22:54 run_atlas
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas       105 Jan  8 22:54 job.xml
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas 225245356 Jan  8 22:54 EVNT.47898824._000844.pool.root.1
[2026-01-09 12:41:32] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 22:54 shared
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 22:54 input.tar.gz
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 22:54 start_atlas.sh
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas         0 Jan  8 22:54 boinc_lockfile
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 22:54 pandaJob.out
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas        57 Jan  8 22:54 setup.sh.local
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas    989771 Jan  8 22:55 agis_schedconf.cvmfs.json
[2026-01-09 12:41:32] drwx------. 5 boincer umatlas      4096 Jan  8 22:55 pilot3
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas 224020014 Jan  9 12:34 HITS.47898826._021969.pool.root.1
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas       531 Jan  9 12:34 boinc_task_state.xml
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas      6658 Jan  9 12:37 init_data.xml
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas      1057 Jan  9 12:39 memory_monitor_summary.json
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:39 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas    879399 Jan  9 12:39 log.47898826._021969.job.log.tgz.1
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas      7848 Jan  9 12:40 heartbeat.json
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas        95 Jan  9 12:41 pilot_heartbeat.json
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas        28 Jan  9 12:41 wrapper_checkpoint.txt
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas      4824 Jan  9 12:41 pilotlog.txt
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 12:41 boinc_mmap_file
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas   4963961 Jan  9 12:41 log.47898826._021969.job.log.1
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas       357 Jan  9 12:41 output.list
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas       620 Jan  9 12:41 runtime_log
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas   5867520 Jan  9 12:41 result.tar.gz
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas      9330 Jan  9 12:41 runtime_log.err
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas       659 Jan  9 12:41 pjMKDmxE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTzjKDmpw18fn.diag
[2026-01-09 12:41:32] -rw-r--r--. 1 boincer umatlas     21299 Jan  9 12:41 stderr.txt
[2026-01-09 12:41:32] HITS file was successfully produced:
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas 224020014 Jan  9 12:34 shared/HITS.pool.root.1
[2026-01-09 12:41:32]  *** Contents of shared directory: ***
[2026-01-09 12:41:32] total 445072
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas 225245356 Jan  8 22:54 ATLAS.root_0
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 22:54 input.tar.gz
[2026-01-09 12:41:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 22:54 start_atlas.sh
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas 224020014 Jan  9 12:34 HITS.pool.root.1
[2026-01-09 12:41:32] -rw-------. 1 boincer umatlas   5867520 Jan  9 12:41 result.tar.gz
12:41:33 (3669674): run_atlas exited; CPU time 73453.956906
12:41:33 (3669674): called boinc_finish(0)

</stderr_txt>
]]>

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