Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:47:48 (22154): wrapper (7.7.26015): starting
19:47:48 (22154): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 19:47:48] Arguments: --nthreads 8
[2026-01-08 19:47:48] Threads: 8
[2026-01-08 19:47:48] Checking for CVMFS
[2026-01-08 19:47:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 19:47:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 19:47:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 19:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 19:47:52] 2.11.2.0 10876 34353 98200 154916 3 61 17184029 25165825 96 130560 0 15529125 99.777 9589474 3590 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 19:47:52] CVMFS is ok
[2026-01-08 19:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 19:47:52] Checking for apptainer binary...
[2026-01-08 19:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 19:47:52] Running /usr/bin/apptainer --version
[2026-01-08 19:47:52] apptainer version 1.3.2-1.el7
[2026-01-08 19:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 19:47:56] cg-vwn386.simple-grid.lan
[2026-01-08 19:47:56] apptainer works
[2026-01-08 19:47:57] Set ATHENA_PROC_NUMBER=8
[2026-01-08 19:47:57] Set ATHENA_CORE_NUMBER=8
[2026-01-08 19:47:57] Starting ATLAS job with PandaID=6962920268
[2026-01-08 19:47:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:09:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:09:19] 2026-01-09 01:08:18,690 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 02:09:19] 2026-01-09 01:08:18,691 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 02:09:19] 2026-01-09 01:08:18,693 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6962920268/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,694 | INFO     | extracted standard info from prmon json
[2026-01-09 02:09:19] 2026-01-09 01:08:18,694 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 02:09:19] 2026-01-09 01:08:18,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 02:09:19] 2026-01-09 01:08:18,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 02:09:19] 2026-01-09 01:08:18,694 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 02:09:19] 2026-01-09 01:08:18,702 | INFO     | fitting pss+swap vs Time
[2026-01-09 02:09:19] 2026-01-09 01:08:18,703 | INFO     | sum of square deviations: 14346910860.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,707 | INFO     | sum of deviations: 228528448000.00003
[2026-01-09 02:09:19] 2026-01-09 01:08:18,708 | INFO     | mean x: 1767909809.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,708 | INFO     | mean y: 2438886.6991643454
[2026-01-09 02:09:19] 2026-01-09 01:08:18,708 | INFO     | intersect: -28158165775.67249
[2026-01-09 02:09:19] 2026-01-09 01:08:18,708 | INFO     | chi2: 8.535251656979128
[2026-01-09 02:09:19] 2026-01-09 01:08:18,709 | INFO     | sum of square deviations: 13755764892.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,713 | INFO     | sum of deviations: 249036392379.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,714 | INFO     | mean x: 1767909656.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,714 | INFO     | mean y: 2444107.8220338984
[2026-01-09 02:09:19] 2026-01-09 01:08:18,714 | INFO     | intersect: -32004052539.09942
[2026-01-09 02:09:19] 2026-01-09 01:08:18,714 | INFO     | chi2: 7.809883936345815
[2026-01-09 02:09:19] 2026-01-09 01:08:18,715 | INFO     | current chi2=7.809883936345815 (change=8.498492484872333 %)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,715 | INFO     | right removable region: 353
[2026-01-09 02:09:19] 2026-01-09 01:08:18,715 | INFO     | sum of square deviations: 13755764892.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,719 | INFO     | sum of deviations: 103734389970.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,720 | INFO     | mean x: 1767909961.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,720 | INFO     | mean y: 2471065.8192090397
[2026-01-09 02:09:19] 2026-01-09 01:08:18,720 | INFO     | intersect: -13329616448.854683
[2026-01-09 02:09:19] 2026-01-09 01:08:18,721 | INFO     | chi2: 3.7289075336153346
[2026-01-09 02:09:19] 2026-01-09 01:08:18,721 | INFO     | current chi2=3.7289075336153346 (change=56.31168612859503 %)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,721 | INFO     | sum of square deviations: 13181084350.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,725 | INFO     | sum of deviations: 6605237868.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,726 | INFO     | mean x: 1767910114.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,726 | INFO     | mean y: 2496818.46991404
[2026-01-09 02:09:19] 2026-01-09 01:08:18,726 | INFO     | intersect: -883429295.2047167
[2026-01-09 02:09:19] 2026-01-09 01:08:18,726 | INFO     | chi2: 0.9774412822895007
[2026-01-09 02:09:19] 2026-01-09 01:08:18,727 | INFO     | current chi2=0.9774412822895007 (change=73.78746258849091 %)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,727 | INFO     | sum of square deviations: 12622636670.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,731 | INFO     | sum of deviations: -13836618470.999996
[2026-01-09 02:09:19] 2026-01-09 01:08:18,731 | INFO     | mean x: 1767910266.5
[2026-01-09 02:09:19] 2026-01-09 01:08:18,732 | INFO     | mean y: 2502388.668604651
[2026-01-09 02:09:19] 2026-01-09 01:08:18,732 | INFO     | intersect: 1940441385.7295432
[2026-01-09 02:09:19] 2026-01-09 01:08:18,732 | INFO     | chi2: 0.8431192729259492
[2026-01-09 02:09:19] 2026-01-09 01:08:18,732 | INFO     | current chi2=0.8431192729259492 (change=13.74220751643756 %)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,732 | INFO     | left removable region: 30
[2026-01-09 02:09:19] 2026-01-09 01:08:18,733 | INFO     | sum of square deviations: 10449170802.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,737 | INFO     | sum of deviations: -3224982525.9999995
[2026-01-09 02:09:19] 2026-01-09 01:08:18,737 | INFO     | mean x: 1767910541.0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,737 | INFO     | mean y: 2512366.9411764704
[2026-01-09 02:09:19] 2026-01-09 01:08:18,737 | INFO     | intersect: 548151892.8224958
[2026-01-09 02:09:19] 2026-01-09 01:08:18,738 | INFO     | chi2: 0.007282076676102565
[2026-01-09 02:09:19] 2026-01-09 01:08:18,738 | INFO     | current memory leak: -0.31 B/s (using 323 data points, chi2=0.01)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | ..............................
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | . Timing measurements:
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | . get job = 0 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | . initial setup = 17 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | . payload setup = 153 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,739 | INFO     | . stage-in = 0 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,740 | INFO     | . payload execution = 22055 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,740 | INFO     | . stage-out = 4 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,740 | INFO     | . log creation = 1 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,740 | INFO     | ..............................
[2026-01-09 02:09:19] 2026-01-09 01:08:18,926 | INFO     | 
[2026-01-09 02:09:19] 2026-01-09 01:08:18,926 | INFO     | job summary report
[2026-01-09 02:09:19] 2026-01-09 01:08:18,926 | INFO     | --------------------------------------------------
[2026-01-09 02:09:19] 2026-01-09 01:08:18,926 | INFO     | PanDA job id: 6962920268
[2026-01-09 02:09:19] 2026-01-09 01:08:18,926 | INFO     | task id: 47898826
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | errors: (none)
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | pilot state: finished 
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | transexitcode: 0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | exeerrorcode: 0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | exeerrordiag: 
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | exitcode: 0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | exitmsg: OK
[2026-01-09 02:09:19] 2026-01-09 01:08:18,927 | INFO     | cpuconsumptiontime: 82926 s
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | nevents: 400
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | neventsw: 0
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | pid: 32349
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | pgrp: 32349
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | corecount: 8
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | event service: False
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | sizes: {0: 2283141, 1: 2283827, 2: 2284026, 13: 2284026, 23: 2284082, 34: 2284110, 45: 2284266, 56: 2284294, 66: 2284322, 77: 2284350, 88: 2284406, 99: 2284714, 10
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | --------------------------------------------------
[2026-01-09 02:09:19] 2026-01-09 01:08:18,928 | INFO     | 
[2026-01-09 02:09:19] 2026-01-09 01:08:18,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-09 02:09:19] 2026-01-09 01:08:19,588 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,588 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,588 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,588 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:09:19] 2026-01-09 01:08:19,590 | INFO     | job 6962920268 has completed (purged errors)
[2026-01-09 02:09:19] 2026-01-09 01:08:19,591 | INFO     | overall cleanup function is called
[2026-01-09 02:09:19] 2026-01-09 01:08:20,600 | INFO     | --- collectZombieJob: --- 10, [32349]
[2026-01-09 02:09:19] 2026-01-09 01:08:20,600 | INFO     | zombie collector waiting for pid 32349
[2026-01-09 02:09:19] 2026-01-09 01:08:20,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:09:19] 2026-01-09 01:08:20,600 | INFO     | collected zombie processes
[2026-01-09 02:09:19] 2026-01-09 01:08:20,600 | INFO     | will attempt to kill all subprocesses of pid=32349
[2026-01-09 02:09:19] 2026-01-09 01:08:20,696 | INFO     | process IDs to be killed: [32349] (in reverse order)
[2026-01-09 02:09:19] 2026-01-09 01:08:21,733 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:09:19] 2026-01-09 01:08:21,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:09:19] 2026-01-09 01:08:21,736 | INFO     | did not find any defunct processes belonging to 32349
[2026-01-09 02:09:19] 2026-01-09 01:08:21,738 | INFO     | did not find any defunct processes belonging to 32349
[2026-01-09 02:09:19] 2026-01-09 01:08:21,738 | INFO     | ready for new job
[2026-01-09 02:09:19] 2026-01-09 01:08:21,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:09:19] 2026-01-09 01:08:21,740 | INFO     | ***************************************
[2026-01-09 02:09:19] 2026-01-09 01:08:21,741 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:09:19] 2026-01-09 01:08:21,741 | INFO     | ***************************************
[2026-01-09 02:09:19] 2026-01-09 01:08:21,741 | INFO     | 
[2026-01-09 02:09:19] 2026-01-09 01:08:21,742 | INFO     | pilot is running in a VM
[2026-01-09 02:09:19] 2026-01-09 01:08:21,742 | INFO     | architecture information:
[2026-01-09 02:09:19] 2026-01-09 01:08:21,754 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:09:19] 2026-01-09 01:08:22,045 | INFO     | cat /etc/os-release:
[2026-01-09 02:09:19] NAME="CentOS Linux"
[2026-01-09 02:09:19] VERSION="7 (Core)"
[2026-01-09 02:09:19] ID="centos"
[2026-01-09 02:09:19] ID_LIKE="rhel fedora"
[2026-01-09 02:09:19] VERSION_ID="7"
[2026-01-09 02:09:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:09:19] ANSI_COLOR="0;31"
[2026-01-09 02:09:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:09:19] HOME_URL="https://www.centos.org/"
[2026-01-09 02:09:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:09:19] 
[2026-01-09 02:09:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:09:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:09:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:09:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:09:19] 
[2026-01-09 02:09:19] 2026-01-09 01:08:22,046 | INFO     | ***************************************
[2026-01-09 02:09:19] 2026-01-09 01:08:22,549 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-09 02:09:19] 2026-01-09 01:08:22,790 | INFO     | sufficient remaining disk space (495582183424 B)
[2026-01-09 02:09:19] 2026-01-09 01:08:22,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:09:19] 2026-01-09 01:08:22,791 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:09:19] 2026-01-09 01:08:22,791 | INFO     | update_server=False
[2026-01-09 02:09:19] 2026-01-09 01:08:22,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:09:19] 2026-01-09 01:08:22,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:09:19] 2026-01-09 01:08:22,853 | INFO     | all data control threads have been joined
[2026-01-09 02:09:19] 2026-01-09 01:08:23,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:09:19] 2026-01-09 01:08:23,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:09:19] 2026-01-09 01:08:23,436 | INFO     | aborting loop
[2026-01-09 02:09:19] 2026-01-09 01:08:23,797 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:23,822 | INFO     | all payload control threads have been joined
[2026-01-09 02:09:19] 2026-01-09 01:08:23,852 | INFO     | all job control threads have been joined
[2026-01-09 02:09:19] 2026-01-09 01:08:23,859 | INFO     | [data] control thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:23,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:09:19] 2026-01-09 01:08:24,072 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,150 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,217 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,378 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,441 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,442 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,766 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,799 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,828 | INFO     | [payload] control thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,858 | INFO     | [job] control thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:24,946 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:25,090 | INFO     | [job] validate thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:25,153 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:27,137 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:09:19] 2026-01-09 01:08:49,919 | INFO     | 22567s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 02:09:19] 2026-01-09 01:08:51,034 | INFO     | PID=25883 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 02:09:19] 2026-01-09 01:08:51,034 | INFO     | .. there are 2 such processes running
[2026-01-09 02:09:19] 2026-01-09 01:08:51,035 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:09:19] 2026-01-09 01:08:51,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:09:19] 2026-01-09 01:08:51,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:09:19] 2026-01-09 01:09:09,014 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:09:19] 2026-01-09 01:09:10,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228029581120)>', '<ExcThread(monitor, started 140227444201216)>']
[2026-01-09 02:09:19] 2026-01-09 01:09:11,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:09:19] 2026-01-09 01:09:11,155 | INFO     | [monitor] control thread has ended
[2026-01-09 02:09:19] 2026-01-09 01:09:15,249 | INFO     | all workflow threads have been joined
[2026-01-09 02:09:19] 2026-01-09 01:09:15,249 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:09:19] 2026-01-09 01:09:15,249 | INFO     | traces error code: 0
[2026-01-09 02:09:19] 2026-01-09 01:09:15,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:09:19] 2026-01-09 01:09:15,644 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:09:19] 2026-01-09 01:09:15,768 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:09:19] 2026-01-09 01:09:15,850 [wrapper] pilotpid: 25883
[2026-01-09 02:09:19] 2026-01-09 01:09:15,944 [wrapper] Pilot exit status: 0
[2026-01-09 02:09:19] 2026-01-09 01:09:16,316 [wrapper] pandaids: 6962920268
[2026-01-09 02:09:19] 2026-01-09 01:09:16,649 [wrapper] cleanup supervisor_pilot  3072 25884
[2026-01-09 02:09:19] 2026-01-09 01:09:16,745 [wrapper] Test setup, not cleaning
[2026-01-09 02:09:19] 2026-01-09 01:09:16,828 [wrapper] apfmon messages muted
[2026-01-09 02:09:19] 2026-01-09 01:09:16,925 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:09:19] 2026-01-09 01:09:16,995 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:09:19]  *** Error codes and diagnostics ***
[2026-01-09 02:09:19]     "exeErrorCode": 0,
[2026-01-09 02:09:19]     "exeErrorDiag": "",
[2026-01-09 02:09:19]     "pilotErrorCode": 0,
[2026-01-09 02:09:19]     "pilotErrorDiag": "",
[2026-01-09 02:09:19]  *** Listing of results directory ***
[2026-01-09 02:09:19] total 444984
[2026-01-09 02:09:19] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc       100 Jan  8 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:09:19] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 19:47 run_atlas
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc       105 Jan  8 19:47 job.xml
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc      6391 Jan  8 19:47 init_data.xml
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc 226628826 Jan  8 19:47 EVNT.47898824._000830.pool.root.1
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc     15847 Jan  8 19:47 start_atlas.sh
[2026-01-09 02:09:19] drwxrwx--x. 2 boinc boinc        68 Jan  8 19:47 shared
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc    592403 Jan  8 19:47 input.tar.gz
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc         0 Jan  8 19:47 boinc_lockfile
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc      2519 Jan  8 19:47 pandaJob.out
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc    989829 Jan  8 19:52 agis_schedconf.cvmfs.json
[2026-01-09 02:09:19] drwx------. 5 boinc boinc      4096 Jan  8 19:52 pilot3
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc 217986169 Jan  9 02:04 HITS.47898826._021873.pool.root.1
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc       531 Jan  9 02:05 boinc_task_state.xml
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc      1014 Jan  9 02:06 memory_monitor_summary.json
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc   1516240 Jan  9 02:06 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc    576032 Jan  9 02:06 log.47898826._021873.job.log.tgz.1
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc        95 Jan  9 02:08 pilot_heartbeat.json
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc      7781 Jan  9 02:08 heartbeat.json
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc      8192 Jan  9 02:09 boinc_mmap_file
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc        28 Jan  9 02:09 wrapper_checkpoint.txt
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc      5001 Jan  9 02:09 pilotlog.txt
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc   2997718 Jan  9 02:09 log.47898826._021873.job.log.1
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc       357 Jan  9 02:09 output.list
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc       620 Jan  9 02:09 runtime_log
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc   3594240 Jan  9 02:09 result.tar.gz
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc      8833 Jan  9 02:09 runtime_log.err
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc       657 Jan  9 02:09 FFJMDmkE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzxjKDmmQgZPm.diag
[2026-01-09 02:09:19] -rw-r--r--. 1 boinc boinc     20797 Jan  9 02:09 stderr.txt
[2026-01-09 02:09:19] HITS file was successfully produced:
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc 217986169 Jan  9 02:04 shared/HITS.pool.root.1
[2026-01-09 02:09:19]  *** Contents of shared directory: ***
[2026-01-09 02:09:19] total 438308
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc 226628826 Jan  8 19:47 ATLAS.root_0
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc     15847 Jan  8 19:47 start_atlas.sh
[2026-01-09 02:09:19] -rw-r--r--. 2 boinc boinc    592403 Jan  8 19:47 input.tar.gz
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc 217986169 Jan  9 02:04 HITS.pool.root.1
[2026-01-09 02:09:19] -rw-------. 1 boinc boinc   3594240 Jan  9 02:09 result.tar.gz
02:09:21 (22154): run_atlas exited; CPU time 83158.834226
02:09:21 (22154): called boinc_finish(0)

</stderr_txt>
]]>

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