Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:52:03 (2438307): wrapper (7.7.26015): starting
06:52:03 (2438307): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 06:52:03] Arguments: --nthreads 9
[2026-01-08 06:52:03] Threads: 9
[2026-01-08 06:52:03] Checking for CVMFS
[2026-01-08 06:52:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 06:52:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 06:52:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 06:52:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 06:52:26] 2.13.3.0 8980 91937 366204 154906 2 86 20054827 32935936 24882 16776704 0 431523968 99.712 320784085 33751 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 06:52:26] CVMFS is ok
[2026-01-08 06:52:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 06:52:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 06:52:26] Further information can be found at the LHC@home message board.
[2026-01-08 06:52:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 06:52:26] Checking for apptainer binary...
[2026-01-08 06:52:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 06:52:26] Running /usr/bin/apptainer --version
[2026-01-08 06:52:26] apptainer version 1.4.5-2.el9
[2026-01-08 06:52:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 06:52:27] c-5-4.aglt2.org
[2026-01-08 06:52:27] apptainer works
[2026-01-08 06:52:27] Set ATHENA_PROC_NUMBER=9
[2026-01-08 06:52:27] Set ATHENA_CORE_NUMBER=9
[2026-01-08 06:52:27] Starting ATLAS job with PandaID=6962931109
[2026-01-08 06:52:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:50:53]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:50:53] 2026-01-08 18:50:05,230 | INFO     | monitor loop #1339: job 0:6962931109 is in state 'finished'
[2026-01-08 13:50:53] 2026-01-08 18:50:05,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 13:50:53] 2026-01-08 18:50:06,181 | INFO     | time since job start (24989s) is within the limit (174528.0s)
[2026-01-08 13:50:53] 2026-01-08 18:50:07,750 | INFO     | monitor loop #1340: job 0:6962931109 is in state 'finished'
[2026-01-08 13:50:53] 2026-01-08 18:50:07,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 13:50:53] 2026-01-08 18:50:08,188 | INFO     | time since job start (24991s) is within the limit (174528.0s)
[2026-01-08 13:50:53] 2026-01-08 18:50:08,654 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 13:50:53] 2026-01-08 18:50:08,737 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1599749999996
[2026-01-08 13:50:53] 2026-01-08 18:50:08,752 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962931109/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 13:50:53] 2026-01-08 18:50:08,754 | INFO     | extracted standard info from prmon json
[2026-01-08 13:50:53] 2026-01-08 18:50:08,754 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 13:50:53] 2026-01-08 18:50:08,754 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 13:50:53] 2026-01-08 18:50:08,770 | INFO     | fitting pss+swap vs Time
[2026-01-08 13:50:53] 2026-01-08 18:50:08,777 | INFO     | sum of square deviations: 20905929171.74935
[2026-01-08 13:50:53] 2026-01-08 18:50:08,785 | INFO     | sum of deviations: 100517841983.40297
[2026-01-08 13:50:53] 2026-01-08 18:50:08,786 | INFO     | mean x: 1767885772.4987714
[2026-01-08 13:50:53] 2026-01-08 18:50:08,786 | INFO     | mean y: 2645970.805896806
[2026-01-08 13:50:53] 2026-01-08 18:50:08,786 | INFO     | intersect: -8497529327.064779
[2026-01-08 13:50:53] 2026-01-08 18:50:08,792 | INFO     | chi2: 15.07130756510267
[2026-01-08 13:50:53] 2026-01-08 18:50:08,793 | INFO     | sum of square deviations: 20145068382.878036
[2026-01-08 13:50:53] 2026-01-08 18:50:08,810 | INFO     | sum of deviations: 225173179950.23154
[2026-01-08 13:50:53] 2026-01-08 18:50:08,811 | INFO     | mean x: 1767885620.017413
[2026-01-08 13:50:53] 2026-01-08 18:50:08,811 | INFO     | mean y: 2670950.395522388
[2026-01-08 13:50:53] 2026-01-08 18:50:08,811 | INFO     | intersect: -19758017833.661884
[2026-01-08 13:50:53] 2026-01-08 18:50:08,831 | INFO     | chi2: 11.780522098186054
[2026-01-08 13:50:53] 2026-01-08 18:50:08,831 | INFO     | current chi2=11.780522098186054 (change=21.834770823311757 %)
[2026-01-08 13:50:53] 2026-01-08 18:50:08,831 | INFO     | right removable region: 401
[2026-01-08 13:50:53] 2026-01-08 18:50:08,832 | INFO     | sum of square deviations: 20144696282.878036
[2026-01-08 13:50:53] 2026-01-08 18:50:08,849 | INFO     | sum of deviations: -40626663133.41562
[2026-01-08 13:50:53] 2026-01-08 18:50:08,849 | INFO     | mean x: 1767885925.017413
[2026-01-08 13:50:53] 2026-01-08 18:50:08,849 | INFO     | mean y: 2674235.773631841
[2026-01-08 13:50:53] 2026-01-08 18:50:08,849 | INFO     | intersect: 3568044739.524311
[2026-01-08 13:50:53] 2026-01-08 18:50:08,868 | INFO     | chi2: 11.269188571608334
[2026-01-08 13:50:53] 2026-01-08 18:50:08,868 | INFO     | current chi2=11.269188571608334 (change=25.227532362872555 %)
[2026-01-08 13:50:53] 2026-01-08 18:50:08,869 | INFO     | sum of square deviations: 19402161418.7202
[2026-01-08 13:50:53] 2026-01-08 18:50:08,979 | INFO     | sum of deviations: -145420548268.2746
[2026-01-08 13:50:53] 2026-01-08 18:50:08,979 | INFO     | mean x: 1767886077.5365238
[2026-01-08 13:50:53] 2026-01-08 18:50:08,979 | INFO     | mean y: 2695729.743073048
[2026-01-08 13:50:53] 2026-01-08 18:50:08,979 | INFO     | intersect: 13253124747.571985
[2026-01-08 13:50:53] 2026-01-08 18:50:08,980 | INFO     | chi2: 9.195925693248451
[2026-01-08 13:50:53] 2026-01-08 18:50:08,980 | INFO     | current chi2=9.195925693248451 (change=18.397623441880047 %)
[2026-01-08 13:50:53] 2026-01-08 18:50:09,030 | INFO     | left removable region: 20
[2026-01-08 13:50:53] 2026-01-08 18:50:09,030 | INFO     | sum of square deviations: 17149628182.808342
[2026-01-08 13:50:53] 2026-01-08 18:50:09,067 | INFO     | sum of deviations: -50630015069.39889
[2026-01-08 13:50:53] 2026-01-08 18:50:09,068 | INFO     | mean x: 1767886199.5800524
[2026-01-08 13:50:53] 2026-01-08 18:50:09,068 | INFO     | mean y: 2740388.947506562
[2026-01-08 13:50:53] 2026-01-08 18:50:09,068 | INFO     | intersect: 5221985026.30051
[2026-01-08 13:50:53] 2026-01-08 18:50:09,069 | INFO     | chi2: 4.460093154703708
[2026-01-08 13:50:53] 2026-01-08 18:50:09,069 | INFO     | current memory leak: -2.95 B/s (using 381 data points, chi2=4.46)
[2026-01-08 13:50:53] 2026-01-08 18:50:09,099 | INFO     | could have reported an average CPU frequency of 2600 MHz (17 samples)
[2026-01-08 13:50:53] 2026-01-08 18:50:09,099 | INFO     | ..............................
[2026-01-08 13:50:53] 2026-01-08 18:50:09,099 | INFO     | . Timing measurements:
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . get job = 0 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . initial setup = 5 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . payload setup = 51 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . stage-in = 0 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . payload execution = 24808 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . stage-out = 7 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | . log creation = 1 s
[2026-01-08 13:50:53] 2026-01-08 18:50:09,100 | INFO     | ..............................
[2026-01-08 13:50:53] 2026-01-08 18:50:10,238 | INFO     | time since job start (24993s) is within the limit (174528.0s)
[2026-01-08 13:50:53] 2026-01-08 18:50:10,330 | INFO     | 
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | job summary report
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | --------------------------------------------------
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | PanDA job id: 6962931109
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | task id: 47961959
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | errors: (none)
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 13:50:53] 2026-01-08 18:50:10,331 | INFO     | pilot state: finished 
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | transexitcode: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | exeerrorcode: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | exeerrordiag: 
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | exitcode: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | exitmsg: OK
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | cpuconsumptiontime: 40880 s
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | nevents: 100
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | neventsw: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:10,332 | INFO     | pid: 2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | pgrp: 2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | corecount: 9
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | event service: False
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | sizes: {0: 2284325, 1: 2284325, 2: 2284552, 13: 2284552, 24: 2284608, 36: 2263120, 37: 2285054, 47: 2285082, 24864: 2321004, 24872: 2329998, 24874: 2330054, 24908:
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | --------------------------------------------------
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | 
[2026-01-08 13:50:53] 2026-01-08 18:50:10,333 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | job 6962931109 has completed (purged errors)
[2026-01-08 13:50:53] 2026-01-08 18:50:10,518 | INFO     | overall cleanup function is called
[2026-01-08 13:50:53] 2026-01-08 18:50:11,553 | INFO     | --- collectZombieJob: --- 10, [2491714]
[2026-01-08 13:50:53] 2026-01-08 18:50:11,554 | INFO     | zombie collector waiting for pid 2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:11,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:50:53] 2026-01-08 18:50:11,554 | INFO     | collected zombie processes
[2026-01-08 13:50:53] 2026-01-08 18:50:11,554 | INFO     | will attempt to kill all subprocesses of pid=2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:16,353 | INFO     | PID=2457334 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 13:50:53] 2026-01-08 18:50:16,354 | INFO     | .. there are 40 such processes running
[2026-01-08 13:50:53] 2026-01-08 18:50:16,388 | INFO     | process IDs to be killed: [2491714] (in reverse order)
[2026-01-08 13:50:53] 2026-01-08 18:50:17,041 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:50:53] 2026-01-08 18:50:17,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:50:53] 2026-01-08 18:50:17,078 | INFO     | did not find any defunct processes belonging to 2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:17,117 | INFO     | did not find any defunct processes belonging to 2491714
[2026-01-08 13:50:53] 2026-01-08 18:50:17,119 | INFO     | ready for new job
[2026-01-08 13:50:53] 2026-01-08 18:50:17,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:50:53] 2026-01-08 18:50:17,127 | INFO     | ***************************************
[2026-01-08 13:50:53] 2026-01-08 18:50:17,129 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:50:53] 2026-01-08 18:50:17,129 | INFO     | ***************************************
[2026-01-08 13:50:53] 2026-01-08 18:50:17,129 | INFO     | 
[2026-01-08 13:50:53] 2026-01-08 18:50:17,136 | INFO     | architecture information:
[2026-01-08 13:50:53] 2026-01-08 18:50:17,160 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:50:53] 2026-01-08 18:50:17,303 | INFO     | cat /etc/os-release:
[2026-01-08 13:50:53] NAME="CentOS Linux"
[2026-01-08 13:50:53] VERSION="7 (Core)"
[2026-01-08 13:50:53] ID="centos"
[2026-01-08 13:50:53] ID_LIKE="rhel fedora"
[2026-01-08 13:50:53] VERSION_ID="7"
[2026-01-08 13:50:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:50:53] ANSI_COLOR="0;31"
[2026-01-08 13:50:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:50:53] HOME_URL="https://www.centos.org/"
[2026-01-08 13:50:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:50:53] 
[2026-01-08 13:50:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:50:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:50:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:50:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:50:53] 
[2026-01-08 13:50:53] 2026-01-08 18:50:17,312 | INFO     | ***************************************
[2026-01-08 13:50:53] 2026-01-08 18:50:17,846 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 13:50:53] 2026-01-08 18:50:17,945 | INFO     | sufficient remaining disk space (75222745088 B)
[2026-01-08 13:50:53] 2026-01-08 18:50:17,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:50:53] 2026-01-08 18:50:17,945 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:50:53] 2026-01-08 18:50:17,945 | INFO     | update_server=False
[2026-01-08 13:50:53] 2026-01-08 18:50:17,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:50:53] 2026-01-08 18:50:18,023 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 13:50:53] 2026-01-08 18:50:18,024 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 13:50:53] 2026-01-08 18:50:18,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:50:53] 2026-01-08 18:50:18,024 | INFO     | will abort loop
[2026-01-08 13:50:53] 2026-01-08 18:50:18,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:50:53] 2026-01-08 18:50:18,413 | INFO     | all payload control threads have been joined
[2026-01-08 13:50:53] 2026-01-08 18:50:18,599 | INFO     | all job control threads have been joined
[2026-01-08 13:50:53] 2026-01-08 18:50:18,951 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,031 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,116 | INFO     | all data control threads have been joined
[2026-01-08 13:50:53] 2026-01-08 18:50:19,245 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,418 | INFO     | [payload] control thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:50:53] 2026-01-08 18:50:19,460 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:50:53] 2026-01-08 18:50:19,642 | INFO     | [job] control thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,843 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,984 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,985 | INFO     | [job] validate thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:19,994 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:20,045 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:20,091 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:20,122 | INFO     | [data] control thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:20,245 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:20,483 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:23,431 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:50:53] 2026-01-08 18:50:26,255 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:50:53] 2026-01-08 18:50:26,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208371304256)>', '<ExcThread(monitor, started 140207043106560)>']
[2026-01-08 13:50:53] 2026-01-08 18:50:31,643 | INFO     | all workflow threads have been joined
[2026-01-08 13:50:53] 2026-01-08 18:50:31,648 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:50:53] 2026-01-08 18:50:31,649 | INFO     | traces error code: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:31,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:50:53] 2026-01-08 18:50:52,491 | INFO     | PID=2457334 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 13:50:53] 2026-01-08 18:50:52,491 | INFO     | .. there are 39 such processes running
[2026-01-08 13:50:53] 2026-01-08 18:50:52,492 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:50:53] 2026-01-08 18:50:52,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:50:53] 2026-01-08 18:50:52,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:50:53] 2026-01-08 18:50:52,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:50:53] 2026-01-08 18:50:52,493 | INFO     | [monitor] control thread has ended
[2026-01-08 13:50:53] 2026-01-08 18:50:53,163 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:50:53] 2026-01-08 18:50:53,171 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:50:53] 2026-01-08 18:50:53,175 [wrapper] pilotpid: 2457334
[2026-01-08 13:50:53] 2026-01-08 18:50:53,178 [wrapper] Pilot exit status: 0
[2026-01-08 13:50:53] 2026-01-08 18:50:53,253 [wrapper] pandaids: 6962931109
[2026-01-08 13:50:53] 2026-01-08 18:50:53,391 [wrapper] cleanup supervisor_pilot  627674 2457335
[2026-01-08 13:50:53] 2026-01-08 18:50:53,421 [wrapper] Test setup, not cleaning
[2026-01-08 13:50:53] 2026-01-08 18:50:53,480 [wrapper] apfmon messages muted
[2026-01-08 13:50:53] 2026-01-08 18:50:53,512 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:50:53] 2026-01-08 18:50:53,522 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:50:53]  *** Error codes and diagnostics ***
[2026-01-08 13:50:53]     "exeErrorCode": 0,
[2026-01-08 13:50:53]     "exeErrorDiag": "",
[2026-01-08 13:50:53]     "pilotErrorCode": 0,
[2026-01-08 13:50:53]     "pilotErrorDiag": "",
[2026-01-08 13:50:53]  *** Listing of results directory ***
[2026-01-08 13:50:53] total 513440
[2026-01-08 13:50:53] -rwx------. 1 boincer umatlas     36322 Jan  8 03:17 runpilot2-wrapper.sh
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:23 queuedata.json
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:23 pilot3.tar.gz
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas       100 Jan  8 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:50:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 06:52 run_atlas
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas       105 Jan  8 06:52 job.xml
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas 414622000 Jan  8 06:52 EVNT.47961955._000017.pool.root.1
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 06:52 start_atlas.sh
[2026-01-08 13:50:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 06:52 shared
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas    592610 Jan  8 06:52 input.tar.gz
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas         0 Jan  8 06:52 boinc_lockfile
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas      2873 Jan  8 06:52 pandaJob.out
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas        57 Jan  8 06:52 setup.sh.local
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas    989835 Jan  8 06:53 agis_schedconf.cvmfs.json
[2026-01-08 13:50:53] drwx------. 5 boincer umatlas      4096 Jan  8 06:53 pilot3
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas       531 Jan  8 13:23 boinc_task_state.xml
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas      6657 Jan  8 13:47 init_data.xml
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas  98234168 Jan  8 13:48 HITS.47961959._000304.pool.root.1
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas      1062 Jan  8 13:49 memory_monitor_summary.json
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas   1516240 Jan  8 13:49 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas   1566783 Jan  8 13:49 log.47961959._000304.job.log.tgz.1
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas      8606 Jan  8 13:50 heartbeat.json
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas        28 Jan  8 13:50 wrapper_checkpoint.txt
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas        95 Jan  8 13:50 pilot_heartbeat.json
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas       823 Jan  8 13:50 pilotlog.txt
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 13:50 boinc_mmap_file
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas   2926005 Jan  8 13:50 log.47961959._000304.job.log.1
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas       353 Jan  8 13:50 output.list
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas       620 Jan  8 13:50 runtime_log
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas   4515840 Jan  8 13:50 result.tar.gz
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas      9328 Jan  8 13:50 runtime_log.err
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas       658 Jan  8 13:50 EwnKDmDO0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgoeKDmnYZp0n.diag
[2026-01-08 13:50:53] -rw-r--r--. 1 boincer umatlas     21542 Jan  8 13:50 stderr.txt
[2026-01-08 13:50:53] HITS file was successfully produced:
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas 98234168 Jan  8 13:48 shared/HITS.pool.root.1
[2026-01-08 13:50:53]  *** Contents of shared directory: ***
[2026-01-08 13:50:53] total 505852
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas 414622000 Jan  8 06:52 ATLAS.root_0
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 06:52 start_atlas.sh
[2026-01-08 13:50:53] -rw-r--r--. 2 boincer umatlas    592610 Jan  8 06:52 input.tar.gz
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas  98234168 Jan  8 13:48 HITS.pool.root.1
[2026-01-08 13:50:53] -rw-------. 1 boincer umatlas   4515840 Jan  8 13:50 result.tar.gz
13:50:55 (2438307): run_atlas exited; CPU time 41497.213541
13:50:55 (2438307): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN