Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:01 (3895): wrapper (7.7.26015): starting
12:26:01 (3895): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:26:01] Arguments: --nthreads 8
[2026-01-08 12:26:01] Threads: 8
[2026-01-08 12:26:01] Checking for CVMFS
[2026-01-08 12:26:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:26:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:26:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:26:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:26:05] 2.11.2.0 23910 33914 124408 154905 2 11 15800849 25165825 899 130560 0 15032264 99.788 11438185 3960 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 12:26:05] CVMFS is ok
[2026-01-08 12:26:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:26:05] Checking for apptainer binary...
[2026-01-08 12:26:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:26:05] Running /usr/bin/apptainer --version
[2026-01-08 12:26:05] apptainer version 1.3.2-1.el7
[2026-01-08 12:26:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:26:27] cg-vwn369.simple-grid.lan
[2026-01-08 12:26:27] apptainer works
[2026-01-08 12:26:27] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:26:27] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:26:27] Starting ATLAS job with PandaID=6962919621
[2026-01-08 12:26:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:43:48]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:43:48] 2026-01-08 17:43:06,385 | INFO     | extracted standard info from prmon json
[2026-01-08 18:43:48] 2026-01-08 17:43:06,385 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 18:43:48] 2026-01-08 17:43:06,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 18:43:48] 2026-01-08 17:43:06,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 18:43:48] 2026-01-08 17:43:06,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 18:43:48] 2026-01-08 17:43:06,396 | INFO     | fitting pss+swap vs Time
[2026-01-08 18:43:48] 2026-01-08 17:43:06,397 | INFO     | sum of square deviations: 13990234405.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,401 | INFO     | sum of deviations: 119496810374.4999
[2026-01-08 18:43:48] 2026-01-08 17:43:06,402 | INFO     | mean x: 1767883220.5
[2026-01-08 18:43:48] 2026-01-08 17:43:06,402 | INFO     | mean y: 2465723.6938202246
[2026-01-08 18:43:48] 2026-01-08 17:43:06,402 | INFO     | intersect: -15097810644.002155
[2026-01-08 18:43:48] 2026-01-08 17:43:06,403 | INFO     | chi2: 8.850141231283972
[2026-01-08 18:43:48] 2026-01-08 17:43:06,403 | INFO     | sum of square deviations: 13408995600.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,407 | INFO     | sum of deviations: 141003515683.9997
[2026-01-08 18:43:48] 2026-01-08 17:43:06,408 | INFO     | mean x: 1767883068.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,408 | INFO     | mean y: 2471296.3504273505
[2026-01-08 18:43:48] 2026-01-08 17:43:06,408 | INFO     | intersect: -18587864277.047443
[2026-01-08 18:43:48] 2026-01-08 17:43:06,408 | INFO     | chi2: 8.141705420028119
[2026-01-08 18:43:48] 2026-01-08 17:43:06,409 | INFO     | current chi2=8.141705420028119 (change=8.004796677725718 %)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,409 | INFO     | right removable region: 350
[2026-01-08 18:43:48] 2026-01-08 17:43:06,409 | INFO     | sum of square deviations: 13408995600.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,414 | INFO     | sum of deviations: -6673849936.000015
[2026-01-08 18:43:48] 2026-01-08 17:43:06,414 | INFO     | mean x: 1767883373.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,414 | INFO     | mean y: 2498813.091168091
[2026-01-08 18:43:48] 2026-01-08 17:43:06,414 | INFO     | intersect: 882399790.592536
[2026-01-08 18:43:48] 2026-01-08 17:43:06,415 | INFO     | chi2: 3.8795263850044917
[2026-01-08 18:43:48] 2026-01-08 17:43:06,415 | INFO     | current chi2=3.8795263850044917 (change=56.16424321805255 %)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,416 | INFO     | sum of square deviations: 12844082682.5
[2026-01-08 18:43:48] 2026-01-08 17:43:06,420 | INFO     | sum of deviations: -101460182449.50002
[2026-01-08 18:43:48] 2026-01-08 17:43:06,420 | INFO     | mean x: 1767883525.5
[2026-01-08 18:43:48] 2026-01-08 17:43:06,420 | INFO     | mean y: 2524373.2919075144
[2026-01-08 18:43:48] 2026-01-08 17:43:06,420 | INFO     | intersect: 13967693352.70729
[2026-01-08 18:43:48] 2026-01-08 17:43:06,421 | INFO     | chi2: 1.1737781115899646
[2026-01-08 18:43:48] 2026-01-08 17:43:06,421 | INFO     | current chi2=1.1737781115899646 (change=69.74429363009462 %)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,421 | INFO     | sum of square deviations: 12295263090.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,426 | INFO     | sum of deviations: -115497002341.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,426 | INFO     | mean x: 1767883678.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,426 | INFO     | mean y: 2528254.7302052784
[2026-01-08 18:43:48] 2026-01-08 17:43:06,426 | INFO     | intersect: 16609351858.419495
[2026-01-08 18:43:48] 2026-01-08 17:43:06,427 | INFO     | chi2: 1.0630838528818611
[2026-01-08 18:43:48] 2026-01-08 17:43:06,427 | INFO     | current chi2=1.0630838528818611 (change=9.430594898226577 %)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,427 | INFO     | left removable region: 30
[2026-01-08 18:43:48] 2026-01-08 17:43:06,428 | INFO     | sum of square deviations: 10160711440.0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,432 | INFO     | sum of deviations: -63387669015.00002
[2026-01-08 18:43:48] 2026-01-08 17:43:06,432 | INFO     | mean x: 1767883952.5
[2026-01-08 18:43:48] 2026-01-08 17:43:06,432 | INFO     | mean y: 2526476.44375
[2026-01-08 18:43:48] 2026-01-08 17:43:06,432 | INFO     | intersect: 11031482814.760944
[2026-01-08 18:43:48] 2026-01-08 17:43:06,433 | INFO     | chi2: 0.2502493916202238
[2026-01-08 18:43:48] 2026-01-08 17:43:06,433 | INFO     | current memory leak: -6.24 B/s (using 320 data points, chi2=0.25)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | ..............................
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | . Timing measurements:
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | . get job = 0 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | . initial setup = 7 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | . payload setup = 159 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,434 | INFO     | . stage-in = 0 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,435 | INFO     | . payload execution = 21829 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,435 | INFO     | . stage-out = 4 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,435 | INFO     | . log creation = 1 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,435 | INFO     | ..............................
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | 
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | job summary report
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | --------------------------------------------------
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | PanDA job id: 6962919621
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | task id: 47898826
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | errors: (none)
[2026-01-08 18:43:48] 2026-01-08 17:43:06,566 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | pilot state: finished 
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | transexitcode: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | exeerrorcode: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | exeerrordiag: 
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | exitcode: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | exitmsg: OK
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | cpuconsumptiontime: 82208 s
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | nevents: 400
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | neventsw: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:06,567 | INFO     | pid: 14331
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | pgrp: 14331
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | corecount: 8
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | event service: False
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | sizes: {0: 2283798, 1: 2283997, 2: 2283997, 12: 2284025, 23: 2284053, 34: 2284081, 45: 2284237, 55: 2284265, 66: 2284293, 77: 2284321, 88: 2284377, 98: 2284685, 10
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | --------------------------------------------------
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | 
[2026-01-08 18:43:48] 2026-01-08 17:43:06,568 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-08 18:43:48] 2026-01-08 17:43:06,584 | INFO     | time since job start (22328s) is within the limit (174528.0s)
[2026-01-08 18:43:48] 2026-01-08 17:43:07,051 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,051 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,051 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,053 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:43:48] 2026-01-08 17:43:07,054 | INFO     | job 6962919621 has completed (purged errors)
[2026-01-08 18:43:48] 2026-01-08 17:43:07,054 | INFO     | overall cleanup function is called
[2026-01-08 18:43:48] 2026-01-08 17:43:07,697 | INFO     | PID=7853 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:43:48] 2026-01-08 17:43:07,698 | INFO     | .. there are 2 such processes running
[2026-01-08 18:43:48] 2026-01-08 17:43:08,063 | INFO     | --- collectZombieJob: --- 10, [14331]
[2026-01-08 18:43:48] 2026-01-08 17:43:08,063 | INFO     | zombie collector waiting for pid 14331
[2026-01-08 18:43:48] 2026-01-08 17:43:08,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:43:48] 2026-01-08 17:43:08,063 | INFO     | collected zombie processes
[2026-01-08 18:43:48] 2026-01-08 17:43:08,063 | INFO     | will attempt to kill all subprocesses of pid=14331
[2026-01-08 18:43:48] 2026-01-08 17:43:08,150 | INFO     | process IDs to be killed: [14331] (in reverse order)
[2026-01-08 18:43:48] 2026-01-08 17:43:09,165 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:43:48] 2026-01-08 17:43:09,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:43:48] 2026-01-08 17:43:09,168 | INFO     | did not find any defunct processes belonging to 14331
[2026-01-08 18:43:48] 2026-01-08 17:43:09,169 | INFO     | did not find any defunct processes belonging to 14331
[2026-01-08 18:43:48] 2026-01-08 17:43:09,170 | INFO     | ready for new job
[2026-01-08 18:43:48] 2026-01-08 17:43:09,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:43:48] 2026-01-08 17:43:09,172 | INFO     | ***************************************
[2026-01-08 18:43:48] 2026-01-08 17:43:09,172 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:43:48] 2026-01-08 17:43:09,172 | INFO     | ***************************************
[2026-01-08 18:43:48] 2026-01-08 17:43:09,173 | INFO     | 
[2026-01-08 18:43:48] 2026-01-08 17:43:09,173 | INFO     | pilot is running in a VM
[2026-01-08 18:43:48] 2026-01-08 17:43:09,173 | INFO     | architecture information:
[2026-01-08 18:43:48] 2026-01-08 17:43:09,191 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:43:48] 2026-01-08 17:43:09,561 | INFO     | cat /etc/os-release:
[2026-01-08 18:43:48] NAME="CentOS Linux"
[2026-01-08 18:43:48] VERSION="7 (Core)"
[2026-01-08 18:43:48] ID="centos"
[2026-01-08 18:43:48] ID_LIKE="rhel fedora"
[2026-01-08 18:43:48] VERSION_ID="7"
[2026-01-08 18:43:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:43:48] ANSI_COLOR="0;31"
[2026-01-08 18:43:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:43:48] HOME_URL="https://www.centos.org/"
[2026-01-08 18:43:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:43:48] 
[2026-01-08 18:43:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:43:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:43:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:43:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:43:48] 
[2026-01-08 18:43:48] 2026-01-08 17:43:09,561 | INFO     | ***************************************
[2026-01-08 18:43:48] 2026-01-08 17:43:10,065 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-08 18:43:48] 2026-01-08 17:43:10,306 | INFO     | sufficient remaining disk space (496380149760 B)
[2026-01-08 18:43:48] 2026-01-08 17:43:10,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:43:48] 2026-01-08 17:43:10,307 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:43:48] 2026-01-08 17:43:10,307 | INFO     | update_server=False
[2026-01-08 18:43:48] 2026-01-08 17:43:10,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:43:48] 2026-01-08 17:43:10,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:43:48] 2026-01-08 17:43:10,814 | INFO     | all data control threads have been joined
[2026-01-08 18:43:48] 2026-01-08 17:43:10,834 | INFO     | all payload control threads have been joined
[2026-01-08 18:43:48] 2026-01-08 17:43:10,916 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:43:48] 2026-01-08 17:43:10,917 | INFO     | aborting loop
[2026-01-08 18:43:48] 2026-01-08 17:43:11,314 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,423 | INFO     | all job control threads have been joined
[2026-01-08 18:43:48] 2026-01-08 17:43:11,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:43:48] 2026-01-08 17:43:11,586 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,599 | INFO     | [job] validate thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,754 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,820 | INFO     | [data] control thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,840 | INFO     | [payload] control thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,923 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:11,986 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,067 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,090 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:43:48] 2026-01-08 17:43:12,316 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,430 | INFO     | [job] control thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,586 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:12,728 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:16,208 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:21,224 | INFO     | job.realtimelogging is not enabled
[2026-01-08 18:43:48] 2026-01-08 17:43:22,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:43:48] 2026-01-08 17:43:37,320 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:43:48] 2026-01-08 17:43:38,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363083949888)>', '<ExcThread(monitor, started 140362282694400)>']
[2026-01-08 18:43:48] 2026-01-08 17:43:39,810 | INFO     | PID=7853 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:43:48] 2026-01-08 17:43:39,810 | INFO     | .. there are 2 such processes running
[2026-01-08 18:43:48] 2026-01-08 17:43:39,811 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:43:48] 2026-01-08 17:43:39,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:43:48] 2026-01-08 17:43:39,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:43:48] 2026-01-08 17:43:39,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:43:48] 2026-01-08 17:43:39,811 | INFO     | [monitor] control thread has ended
[2026-01-08 18:43:48] 2026-01-08 17:43:43,724 | INFO     | all workflow threads have been joined
[2026-01-08 18:43:48] 2026-01-08 17:43:43,724 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:43:48] 2026-01-08 17:43:43,724 | INFO     | traces error code: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:43,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:43:48] 2026-01-08 17:43:43,990 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:43:48] 2026-01-08 17:43:44,081 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:43:48] 2026-01-08 17:43:44,183 [wrapper] pilotpid: 7853
[2026-01-08 18:43:48] 2026-01-08 17:43:44,316 [wrapper] Pilot exit status: 0
[2026-01-08 18:43:48] 2026-01-08 17:43:44,763 [wrapper] pandaids: 6962919621
[2026-01-08 18:43:48] 2026-01-08 17:43:45,365 [wrapper] cleanup supervisor_pilot 13527 7854
[2026-01-08 18:43:48] 2026-01-08 17:43:45,454 [wrapper] Test setup, not cleaning
[2026-01-08 18:43:48] 2026-01-08 17:43:45,543 [wrapper] apfmon messages muted
[2026-01-08 18:43:48] 2026-01-08 17:43:45,613 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:43:48] 2026-01-08 17:43:45,700 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:43:48]  *** Error codes and diagnostics ***
[2026-01-08 18:43:48]     "exeErrorCode": 0,
[2026-01-08 18:43:48]     "exeErrorDiag": "",
[2026-01-08 18:43:48]     "pilotErrorCode": 0,
[2026-01-08 18:43:48]     "pilotErrorDiag": "",
[2026-01-08 18:43:48]  *** Listing of results directory ***
[2026-01-08 18:43:48] total 443524
[2026-01-08 18:43:48] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc       100 Jan  8 12:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:43:48] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 12:25 run_atlas
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc       105 Jan  8 12:25 job.xml
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc      6389 Jan  8 12:26 init_data.xml
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc 224503923 Jan  8 12:26 EVNT.47898824._000339.pool.root.1
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:26 start_atlas.sh
[2026-01-08 18:43:48] drwxrwx--x. 2 boinc boinc        68 Jan  8 12:26 shared
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc    592401 Jan  8 12:26 input.tar.gz
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc         0 Jan  8 12:26 boinc_lockfile
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc      2519 Jan  8 12:26 pandaJob.out
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc    989835 Jan  8 12:30 agis_schedconf.cvmfs.json
[2026-01-08 18:43:48] drwx------. 5 boinc boinc      4096 Jan  8 12:30 pilot3
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc 218718175 Jan  8 18:39 HITS.47898826._021411.pool.root.1
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc       531 Jan  8 18:40 boinc_task_state.xml
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc      1011 Jan  8 18:41 memory_monitor_summary.json
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc   1516240 Jan  8 18:41 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc    559440 Jan  8 18:41 log.47898826._021411.job.log.tgz.1
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc        95 Jan  8 18:42 pilot_heartbeat.json
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc      7778 Jan  8 18:43 heartbeat.json
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc      8192 Jan  8 18:43 boinc_mmap_file
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc        28 Jan  8 18:43 wrapper_checkpoint.txt
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc      4955 Jan  8 18:43 pilotlog.txt
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc   2965878 Jan  8 18:43 log.47898826._021411.job.log.1
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc       357 Jan  8 18:43 output.list
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc       620 Jan  8 18:43 runtime_log
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc   3543040 Jan  8 18:43 result.tar.gz
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc      8817 Jan  8 18:43 runtime_log.err
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc       657 Jan  8 18:43 00vMDmLE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3tjKDmsxkcXo.diag
[2026-01-08 18:43:48] -rw-r--r--. 1 boinc boinc     20809 Jan  8 18:43 stderr.txt
[2026-01-08 18:43:48] HITS file was successfully produced:
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc 218718175 Jan  8 18:39 shared/HITS.pool.root.1
[2026-01-08 18:43:48]  *** Contents of shared directory: ***
[2026-01-08 18:43:48] total 436892
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc 224503923 Jan  8 12:26 ATLAS.root_0
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:26 start_atlas.sh
[2026-01-08 18:43:48] -rw-r--r--. 2 boinc boinc    592401 Jan  8 12:26 input.tar.gz
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc 218718175 Jan  8 18:39 HITS.pool.root.1
[2026-01-08 18:43:48] -rw-------. 1 boinc boinc   3543040 Jan  8 18:43 result.tar.gz
18:43:50 (3895): run_atlas exited; CPU time 82432.654933
18:43:50 (3895): called boinc_finish(0)

</stderr_txt>
]]>

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