Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:14:04 (14931): wrapper (7.7.26015): starting
18:14:04 (14931): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 18:14:04] Arguments: --nthreads 8
[2026-01-08 18:14:04] Threads: 8
[2026-01-08 18:14:04] Checking for CVMFS
[2026-01-08 18:14:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:14:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:14:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:14:08] 2.11.2.0 10325 34260 97096 154914 0 60 15458128 25165825 96 130560 0 14543384 99.835 9568077 4130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 18:14:08] CVMFS is ok
[2026-01-08 18:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:14:08] Checking for apptainer binary...
[2026-01-08 18:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:14:08] Running /usr/bin/apptainer --version
[2026-01-08 18:14:08] apptainer version 1.3.2-1.el7
[2026-01-08 18:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:14:33] cg-vwn405.simple-grid.lan
[2026-01-08 18:14:33] apptainer works
[2026-01-08 18:14:33] Set ATHENA_PROC_NUMBER=8
[2026-01-08 18:14:33] Set ATHENA_CORE_NUMBER=8
[2026-01-08 18:14:33] Starting ATLAS job with PandaID=6962918900
[2026-01-08 18:14:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 00:35:01]  *** The last 200 lines of the pilot log: ***
[2026-01-09 00:35:02] 2026-01-08 23:34:02,900 | INFO     | mean x: 1767904180.5
[2026-01-09 00:35:02] 2026-01-08 23:34:02,900 | INFO     | mean y: 2452454.3351955307
[2026-01-09 00:35:02] 2026-01-08 23:34:02,900 | INFO     | intersect: -23368412354.324818
[2026-01-09 00:35:02] 2026-01-08 23:34:02,901 | INFO     | chi2: 9.916528907732383
[2026-01-09 00:35:02] 2026-01-08 23:34:02,902 | INFO     | sum of square deviations: 13639518992.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,906 | INFO     | sum of deviations: 209188343222.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,906 | INFO     | mean x: 1767904028.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,906 | INFO     | mean y: 2457860.7733711046
[2026-01-09 00:35:02] 2026-01-08 23:34:02,906 | INFO     | intersect: -27111761842.262638
[2026-01-09 00:35:02] 2026-01-08 23:34:02,907 | INFO     | chi2: 9.212008085060846
[2026-01-09 00:35:02] 2026-01-08 23:34:02,907 | INFO     | current chi2=9.212008085060846 (change=7.104510350614607 %)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,907 | INFO     | right removable region: 352
[2026-01-09 00:35:02] 2026-01-08 23:34:02,908 | INFO     | sum of square deviations: 13639518992.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,920 | INFO     | sum of deviations: 59936241496.00001
[2026-01-09 00:35:02] 2026-01-08 23:34:02,920 | INFO     | mean x: 1767904333.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,920 | INFO     | mean y: 2485687.181303116
[2026-01-09 00:35:02] 2026-01-08 23:34:02,920 | INFO     | intersect: -7766229698.358505
[2026-01-09 00:35:02] 2026-01-08 23:34:02,921 | INFO     | chi2: 4.736682708445612
[2026-01-09 00:35:02] 2026-01-08 23:34:02,921 | INFO     | current chi2=4.736682708445612 (change=52.23446880942184 %)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,922 | INFO     | sum of square deviations: 13068103627.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,926 | INFO     | sum of deviations: -43003212639.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,926 | INFO     | mean x: 1767904485.5
[2026-01-09 00:35:02] 2026-01-08 23:34:02,926 | INFO     | mean y: 2513142.057471264
[2026-01-09 00:35:02] 2026-01-08 23:34:02,926 | INFO     | intersect: 5820156978.17781
[2026-01-09 00:35:02] 2026-01-08 23:34:02,927 | INFO     | chi2: 1.5829893288720842
[2026-01-09 00:35:02] 2026-01-08 23:34:02,927 | INFO     | current chi2=1.5829893288720842 (change=66.58021179992532 %)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,928 | INFO     | sum of square deviations: 12512874612.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,932 | INFO     | sum of deviations: -77543490421.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,932 | INFO     | mean x: 1767904638.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,932 | INFO     | mean y: 2522571.947521866
[2026-01-09 00:35:02] 2026-01-08 23:34:02,932 | INFO     | intersect: 10958398069.21527
[2026-01-09 00:35:02] 2026-01-08 23:34:02,933 | INFO     | chi2: 1.0077525404840286
[2026-01-09 00:35:02] 2026-01-08 23:34:02,933 | INFO     | current chi2=1.0077525404840286 (change=36.338639679771234 %)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,934 | INFO     | sum of square deviations: 11973599384.5
[2026-01-09 00:35:02] 2026-01-08 23:34:02,948 | INFO     | monitor loop #1591: job 0:6962918900 is in state 'finished'
[2026-01-09 00:35:02] 2026-01-08 23:34:02,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,950 | INFO     | sum of deviations: -71232766531.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,950 | INFO     | mean x: 1767904790.5
[2026-01-09 00:35:02] 2026-01-08 23:34:02,951 | INFO     | mean y: 2520776.402366864
[2026-01-09 00:35:02] 2026-01-08 23:34:02,951 | INFO     | intersect: 10520055658.498451
[2026-01-09 00:35:02] 2026-01-08 23:34:02,951 | INFO     | chi2: 0.9943889974253592
[2026-01-09 00:35:02] 2026-01-08 23:34:02,951 | INFO     | current chi2=0.9943889974253592 (change=1.3260738645472234 %)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,952 | INFO     | left removable region: 40
[2026-01-09 00:35:02] 2026-01-08 23:34:02,952 | INFO     | sum of square deviations: 9417545878.0
[2026-01-09 00:35:02] 2026-01-08 23:34:02,955 | INFO     | sum of deviations: -1707519686.0000086
[2026-01-09 00:35:02] 2026-01-08 23:34:02,956 | INFO     | mean x: 1767905217.5
[2026-01-09 00:35:02] 2026-01-08 23:34:02,956 | INFO     | mean y: 2512997.878205128
[2026-01-09 00:35:02] 2026-01-08 23:34:02,956 | INFO     | intersect: 323056481.3896934
[2026-01-09 00:35:02] 2026-01-08 23:34:02,956 | INFO     | chi2: 0.07529308241127552
[2026-01-09 00:35:02] 2026-01-08 23:34:02,957 | INFO     | current memory leak: -0.18 B/s (using 312 data points, chi2=0.08)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,957 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | ..............................
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . Timing measurements:
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . get job = 0 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . initial setup = 12 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . payload setup = 154 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . stage-in = 0 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . payload execution = 22002 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . stage-out = 4 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,958 | INFO     | . log creation = 1 s
[2026-01-09 00:35:02] 2026-01-08 23:34:02,959 | INFO     | ..............................
[2026-01-09 00:35:02] 2026-01-08 23:34:03,148 | INFO     | 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | job summary report
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | --------------------------------------------------
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | PanDA job id: 6962918900
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | task id: 47898826
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | errors: (none)
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | pilot state: finished 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | transexitcode: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:03,149 | INFO     | exeerrorcode: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | exeerrordiag: 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | exitcode: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | exitmsg: OK
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | cpuconsumptiontime: 82492 s
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | nevents: 400
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | neventsw: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | pid: 25168
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | pgrp: 25168
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | corecount: 8
[2026-01-09 00:35:02] 2026-01-08 23:34:03,150 | INFO     | event service: False
[2026-01-09 00:35:02] 2026-01-08 23:34:03,151 | INFO     | sizes: {0: 2283742, 1: 2283997, 12: 2283997, 23: 2284025, 33: 2284053, 44: 2284109, 55: 2284265, 66: 2284293, 76: 2284321, 87: 2284377, 98: 2284405, 106: 2284975, 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,151 | INFO     | --------------------------------------------------
[2026-01-09 00:35:02] 2026-01-08 23:34:03,151 | INFO     | 
[2026-01-09 00:35:02] 2026-01-08 23:34:03,151 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-09 00:35:02] 2026-01-08 23:34:03,649 | INFO     | time since job start (22492s) is within the limit (174528.0s)
[2026-01-09 00:35:02] 2026-01-08 23:34:03,658 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,658 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,658 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,660 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 00:35:02] 2026-01-08 23:34:03,661 | INFO     | job 6962918900 has completed (purged errors)
[2026-01-09 00:35:02] 2026-01-08 23:34:03,661 | INFO     | overall cleanup function is called
[2026-01-09 00:35:02] 2026-01-08 23:34:04,669 | INFO     | --- collectZombieJob: --- 10, [25168]
[2026-01-09 00:35:02] 2026-01-08 23:34:04,670 | INFO     | zombie collector waiting for pid 25168
[2026-01-09 00:35:02] 2026-01-08 23:34:04,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 00:35:02] 2026-01-08 23:34:04,670 | INFO     | collected zombie processes
[2026-01-09 00:35:02] 2026-01-08 23:34:04,670 | INFO     | will attempt to kill all subprocesses of pid=25168
[2026-01-09 00:35:02] 2026-01-08 23:34:04,759 | INFO     | process IDs to be killed: [25168] (in reverse order)
[2026-01-09 00:35:02] 2026-01-08 23:34:05,638 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 00:35:02] 2026-01-08 23:34:05,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 00:35:02] 2026-01-08 23:34:05,641 | INFO     | did not find any defunct processes belonging to 25168
[2026-01-09 00:35:02] 2026-01-08 23:34:05,642 | INFO     | did not find any defunct processes belonging to 25168
[2026-01-09 00:35:02] 2026-01-08 23:34:05,643 | INFO     | ready for new job
[2026-01-09 00:35:02] 2026-01-08 23:34:05,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 00:35:02] 2026-01-08 23:34:05,645 | INFO     | ***************************************
[2026-01-09 00:35:02] 2026-01-08 23:34:05,645 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 00:35:02] 2026-01-08 23:34:05,645 | INFO     | ***************************************
[2026-01-09 00:35:02] 2026-01-08 23:34:05,646 | INFO     | 
[2026-01-09 00:35:02] 2026-01-08 23:34:05,646 | INFO     | pilot is running in a VM
[2026-01-09 00:35:02] 2026-01-08 23:34:05,646 | INFO     | architecture information:
[2026-01-09 00:35:02] 2026-01-08 23:34:05,653 | INFO     | executing command: cat /etc/os-release
[2026-01-09 00:35:02] 2026-01-08 23:34:05,923 | INFO     | cat /etc/os-release:
[2026-01-09 00:35:02] NAME="CentOS Linux"
[2026-01-09 00:35:02] VERSION="7 (Core)"
[2026-01-09 00:35:02] ID="centos"
[2026-01-09 00:35:02] ID_LIKE="rhel fedora"
[2026-01-09 00:35:02] VERSION_ID="7"
[2026-01-09 00:35:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 00:35:02] ANSI_COLOR="0;31"
[2026-01-09 00:35:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 00:35:02] HOME_URL="https://www.centos.org/"
[2026-01-09 00:35:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 00:35:02] 
[2026-01-09 00:35:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 00:35:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 00:35:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 00:35:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 00:35:02] 
[2026-01-09 00:35:02] 2026-01-08 23:34:05,923 | INFO     | ***************************************
[2026-01-09 00:35:02] 2026-01-08 23:34:06,427 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-09 00:35:02] 2026-01-08 23:34:06,755 | INFO     | sufficient remaining disk space (496214474752 B)
[2026-01-09 00:35:02] 2026-01-08 23:34:06,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 00:35:02] 2026-01-08 23:34:06,756 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 00:35:02] 2026-01-08 23:34:06,756 | INFO     | update_server=False
[2026-01-09 00:35:02] 2026-01-08 23:34:06,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 00:35:02] 2026-01-08 23:34:06,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:35:02] 2026-01-08 23:34:06,756 | INFO     | aborting loop
[2026-01-09 00:35:02] 2026-01-08 23:34:06,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 00:35:02] 2026-01-08 23:34:06,843 [wrapper] supervise_pilot (15 min periods counter: 26)
[2026-01-09 00:35:02] 2026-01-08 23:34:07,056 | INFO     | all data control threads have been joined
[2026-01-09 00:35:02] 2026-01-08 23:34:07,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 00:35:02] 2026-01-08 23:34:07,445 | INFO     | all job control threads have been joined
[2026-01-09 00:35:02] 2026-01-08 23:34:07,577 | INFO     | all payload control threads have been joined
[2026-01-09 00:35:02] 2026-01-08 23:34:07,761 | INFO     | [job] retrieve thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:07,762 | INFO     | [job] job monitor thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:07,764 | INFO     | [data] copytool_in thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,062 | INFO     | [data] control thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,164 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:35:02] 2026-01-08 23:34:08,189 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,360 | INFO     | [payload] validate_post thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,451 | INFO     | [job] control thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,496 | INFO     | [job] validate thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,583 | INFO     | [payload] control thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,630 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,880 | INFO     | [payload] failed_post thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:08,963 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:09,170 | INFO     | [job] queue monitor thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:09,350 | INFO     | [data] copytool_out thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:10,772 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:17,416 | INFO     | job.realtimelogging is not enabled
[2026-01-09 00:35:02] 2026-01-08 23:34:18,422 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 00:35:02] 2026-01-08 23:34:36,792 | INFO     | PID=18655 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 00:35:02] 2026-01-08 23:34:36,792 | INFO     | .. there are 2 such processes running
[2026-01-09 00:35:02] 2026-01-08 23:34:36,792 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 00:35:02] 2026-01-08 23:34:36,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 00:35:02] 2026-01-08 23:34:36,793 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 00:35:02] 2026-01-08 23:34:49,681 | INFO     | [monitor] cgroup control has ended
[2026-01-09 00:35:02] 2026-01-08 23:34:51,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566669199168)>', '<ExcThread(monitor, started 140566058743552)>']
[2026-01-09 00:35:02] 2026-01-08 23:34:51,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 00:35:02] 2026-01-08 23:34:51,883 | INFO     | [monitor] control thread has ended
[2026-01-09 00:35:02] 2026-01-08 23:34:56,783 | INFO     | all workflow threads have been joined
[2026-01-09 00:35:02] 2026-01-08 23:34:56,784 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 00:35:02] 2026-01-08 23:34:56,784 | INFO     | traces error code: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:56,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 00:35:02] 2026-01-08 23:34:57,131 [wrapper] ==== pilot stdout END ====
[2026-01-09 00:35:02] 2026-01-08 23:34:57,203 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 00:35:02] 2026-01-08 23:34:57,278 [wrapper] pilotpid: 18655
[2026-01-09 00:35:02] 2026-01-08 23:34:57,383 [wrapper] Pilot exit status: 0
[2026-01-09 00:35:02] 2026-01-08 23:34:57,806 [wrapper] pandaids: 6962918900
[2026-01-09 00:35:02] 2026-01-08 23:34:58,863 [wrapper] cleanup supervisor_pilot 29201 18656
[2026-01-09 00:35:02] 2026-01-08 23:34:58,986 [wrapper] Test setup, not cleaning
[2026-01-09 00:35:02] 2026-01-08 23:34:59,087 [wrapper] apfmon messages muted
[2026-01-09 00:35:02] 2026-01-08 23:34:59,199 [wrapper] ==== wrapper stdout END ====
[2026-01-09 00:35:02] 2026-01-08 23:34:59,307 [wrapper] ==== wrapper stderr END ====
[2026-01-09 00:35:02]  *** Error codes and diagnostics ***
[2026-01-09 00:35:02]     "exeErrorCode": 0,
[2026-01-09 00:35:02]     "exeErrorDiag": "",
[2026-01-09 00:35:02]     "pilotErrorCode": 0,
[2026-01-09 00:35:02]     "pilotErrorDiag": "",
[2026-01-09 00:35:02]  *** Listing of results directory ***
[2026-01-09 00:35:02] total 447596
[2026-01-09 00:35:02] -rwx------. 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc       100 Jan  8 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 00:35:02] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 18:14 run_atlas
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc       105 Jan  8 18:14 job.xml
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc      6390 Jan  8 18:14 init_data.xml
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 18:14 EVNT.47898824._000834.pool.root.1
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc     15847 Jan  8 18:14 start_atlas.sh
[2026-01-09 00:35:02] drwxrwx--x. 2 boinc boinc        68 Jan  8 18:14 shared
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc    592400 Jan  8 18:14 input.tar.gz
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc         0 Jan  8 18:14 boinc_lockfile
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc      2519 Jan  8 18:14 pandaJob.out
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc    989837 Jan  8 18:19 agis_schedconf.cvmfs.json
[2026-01-09 00:35:02] drwx------. 5 boinc boinc      4096 Jan  8 18:19 pilot3
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc 220552922 Jan  9 00:30 HITS.47898826._020920.pool.root.1
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc       531 Jan  9 00:30 boinc_task_state.xml
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc      1012 Jan  9 00:31 memory_monitor_summary.json
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc   1516240 Jan  9 00:32 agis_ddmendpoints.agis.ALL.json
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc    572724 Jan  9 00:32 log.47898826._020920.job.log.tgz.1
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc        95 Jan  9 00:33 pilot_heartbeat.json
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc      7773 Jan  9 00:34 heartbeat.json
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc      8192 Jan  9 00:34 boinc_mmap_file
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc        28 Jan  9 00:34 wrapper_checkpoint.txt
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc      4956 Jan  9 00:34 pilotlog.txt
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc   2980179 Jan  9 00:34 log.47898826._020920.job.log.1
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc       357 Jan  9 00:35 output.list
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc       620 Jan  9 00:35 runtime_log
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc   3573760 Jan  9 00:35 result.tar.gz
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc       657 Jan  9 00:35 u5DMDmkD0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7pjKDmE9KsSm.diag
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc      8817 Jan  9 00:35 runtime_log.err
[2026-01-09 00:35:02] -rw-r--r--. 1 boinc boinc     20705 Jan  9 00:35 stderr.txt
[2026-01-09 00:35:02] HITS file was successfully produced:
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc 220552922 Jan  9 00:30 shared/HITS.pool.root.1
[2026-01-09 00:35:02]  *** Contents of shared directory: ***
[2026-01-09 00:35:02] total 440940
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 18:14 ATLAS.root_0
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc     15847 Jan  8 18:14 start_atlas.sh
[2026-01-09 00:35:02] -rw-r--r--. 2 boinc boinc    592400 Jan  8 18:14 input.tar.gz
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc 220552922 Jan  9 00:30 HITS.pool.root.1
[2026-01-09 00:35:02] -rw-------. 1 boinc boinc   3573760 Jan  9 00:35 result.tar.gz
00:35:03 (14931): run_atlas exited; CPU time 82724.623685
00:35:03 (14931): called boinc_finish(0)

</stderr_txt>
]]>

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