Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:35:56 (1746248): wrapper (7.7.26015): starting
17:35:56 (1746248): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 17:35:56] Arguments: --nthreads 4
[2026-01-08 17:35:56] Threads: 4
[2026-01-08 17:35:56] Checking for CVMFS
[2026-01-08 17:35:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:35:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:35:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:35:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:35:56] 2.9.2.0 1472446 981 80424 154914 0 57 20914135 36864000 0 130560 0 713351 99.988 41407 14862 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 17:35:56] CVMFS is ok
[2026-01-08 17:35:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:35:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:35:56] Further information can be found at the LHC@home message board.
[2026-01-08 17:35:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:35:56] Checking for apptainer binary...
[2026-01-08 17:35:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:35:56] Running /usr/bin/apptainer --version
[2026-01-08 17:35:56] apptainer version 1.4.1-1.1
[2026-01-08 17:35:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:35:56] thA334
[2026-01-08 17:35:56] apptainer works
[2026-01-08 17:35:56] Set ATHENA_PROC_NUMBER=4
[2026-01-08 17:35:56] Set ATHENA_CORE_NUMBER=4
[2026-01-08 17:35:56] Starting ATLAS job with PandaID=6962918762
[2026-01-08 17:35:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 19:10:16]  *** The last 200 lines of the pilot log: ***
[2026-01-08 19:10:16] 2026-01-08 18:09:29,087 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | job 6962918762 has completed (purged errors)
[2026-01-08 19:10:16] 2026-01-08 18:09:29,088 | INFO     | overall cleanup function is called
[2026-01-08 19:10:16] 2026-01-08 18:09:30,094 | INFO     | --- collectZombieJob: --- 10, [1756620]
[2026-01-08 19:10:16] 2026-01-08 18:09:30,095 | INFO     | zombie collector waiting for pid 1756620
[2026-01-08 19:10:16] 2026-01-08 18:09:30,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 19:10:16] 2026-01-08 18:09:30,095 | INFO     | collected zombie processes
[2026-01-08 19:10:16] 2026-01-08 18:09:30,095 | INFO     | will attempt to kill all subprocesses of pid=1756620
[2026-01-08 19:10:16] 2026-01-08 18:09:30,140 | INFO     | process IDs to be killed: [1756620] (in reverse order)
[2026-01-08 19:10:16] 2026-01-08 18:09:30,171 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 19:10:16] 2026-01-08 18:09:30,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 19:10:16] 2026-01-08 18:09:30,172 | INFO     | did not find any defunct processes belonging to 1756620
[2026-01-08 19:10:16] 2026-01-08 18:09:30,174 | INFO     | did not find any defunct processes belonging to 1756620
[2026-01-08 19:10:16] 2026-01-08 18:09:30,174 | INFO     | ready for new job
[2026-01-08 19:10:16] 2026-01-08 18:09:30,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | ***************************************
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | ***************************************
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | 
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | architecture information:
[2026-01-08 19:10:16] 2026-01-08 18:09:30,175 | INFO     | executing command: cat /etc/os-release
[2026-01-08 19:10:16] 2026-01-08 18:09:30,188 | INFO     | cat /etc/os-release:
[2026-01-08 19:10:16] NAME="CentOS Linux"
[2026-01-08 19:10:16] VERSION="7 (Core)"
[2026-01-08 19:10:16] ID="centos"
[2026-01-08 19:10:16] ID_LIKE="rhel fedora"
[2026-01-08 19:10:16] VERSION_ID="7"
[2026-01-08 19:10:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 19:10:16] ANSI_COLOR="0;31"
[2026-01-08 19:10:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 19:10:16] HOME_URL="https://www.centos.org/"
[2026-01-08 19:10:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 19:10:16] 
[2026-01-08 19:10:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 19:10:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 19:10:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 19:10:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 19:10:16] 
[2026-01-08 19:10:16] 2026-01-08 18:09:30,188 | INFO     | ***************************************
[2026-01-08 19:10:16] 2026-01-08 18:09:30,692 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | INFO     | sufficient remaining disk space (239402483712 B)
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | INFO     | update_server=False
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 19:10:16] 2026-01-08 18:09:30,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:10:16] 2026-01-08 18:09:30,741 | INFO     | all data control threads have been joined
[2026-01-08 19:10:16] 2026-01-08 18:09:30,835 | INFO     | all payload control threads have been joined
[2026-01-08 19:10:16] 2026-01-08 18:09:31,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:10:16] 2026-01-08 18:09:31,651 | INFO     | aborting loop
[2026-01-08 19:10:16] 2026-01-08 18:09:31,715 | INFO     | [job] queue monitor thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:31,715 | INFO     | [job] retrieve thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:31,744 | INFO     | [data] control thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:31,811 | INFO     | all job control threads have been joined
[2026-01-08 19:10:16] 2026-01-08 18:09:31,823 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:31,841 | INFO     | [payload] control thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:31,994 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:32,059 | INFO     | [data] copytool_in thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:32,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 19:10:16] 2026-01-08 18:09:32,512 | INFO     | [payload] failed_post thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:32,657 | INFO     | [job] job monitor thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:32,817 | INFO     | [job] control thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:33,073 | INFO     | [payload] validate_post thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:33,139 | INFO     | [job] validate thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:33,217 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:33,870 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 19:10:16] 2026-01-08 18:09:34,172 | INFO     | [data] copytool_out thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:37,877 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:09:41,611 | INFO     | job.realtimelogging is not enabled
[2026-01-08 19:10:16] 2026-01-08 18:09:42,616 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 19:10:16] 2026-01-08 18:10:00,854 | INFO     | PID=1750043 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 19:10:16] 2026-01-08 18:10:00,854 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 19:10:16] 2026-01-08 18:10:00,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 19:10:16] 2026-01-08 18:10:00,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 19:10:16] 2026-01-08 18:10:11,080 | INFO     | [monitor] cgroup control has ended
[2026-01-08 19:10:16] 2026-01-08 18:10:11,190 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140013995284288)>', '<ExcThread(monitor, started 140012821661440)>']
[2026-01-08 19:10:16] 2026-01-08 18:10:11,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 19:10:16] 2026-01-08 18:10:11,914 | INFO     | [monitor] control thread has ended
[2026-01-08 19:10:16] 2026-01-08 18:10:16,192 | INFO     | all workflow threads have been joined
[2026-01-08 19:10:16] 2026-01-08 18:10:16,193 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 19:10:16] 2026-01-08 18:10:16,194 | INFO     | traces error code: 0
[2026-01-08 19:10:16] 2026-01-08 18:10:16,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 19:10:16] 2026-01-08 18:10:16,263 [wrapper] ==== pilot stdout END ====
[2026-01-08 19:10:16] 2026-01-08 18:10:16,267 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 19:10:16] 2026-01-08 18:10:16,271 [wrapper] pilotpid: 1750043
[2026-01-08 19:10:16] 2026-01-08 18:10:16,275 [wrapper] Pilot exit status: 0
[2026-01-08 19:10:16] 2026-01-08 18:10:16,286 [wrapper] pandaids: 6962918762
[2026-01-08 19:10:16] 2026-01-08 18:10:16,307 [wrapper] cleanup supervisor_pilot 1768953 1750044
[2026-01-08 19:10:16] 2026-01-08 18:10:16,311 [wrapper] Test setup, not cleaning
[2026-01-08 19:10:16] 2026-01-08 18:10:16,314 [wrapper] apfmon messages muted
[2026-01-08 19:10:16] 2026-01-08 18:10:16,318 [wrapper] ==== wrapper stdout END ====
[2026-01-08 19:10:16] 2026-01-08 18:10:16,321 [wrapper] ==== wrapper stderr END ====
[2026-01-08 19:10:16]  *** Error codes and diagnostics ***
[2026-01-08 19:10:16]     "exeErrorCode": 0,
[2026-01-08 19:10:16]     "exeErrorDiag": "",
[2026-01-08 19:10:16]     "pilotErrorCode": 0,
[2026-01-08 19:10:16]     "pilotErrorDiag": "",
[2026-01-08 19:10:16]  *** Listing of results directory ***
[2026-01-08 19:10:16] total 433116
[2026-01-08 19:10:16] -rwx------ 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc       100 Jan  8 17:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 19:10:16] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 17:35 run_atlas
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc       105 Jan  8 17:35 job.xml
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc 223135115 Jan  8 17:35 EVNT.47898824._000324.pool.root.1
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc    592404 Jan  8 17:35 input.tar.gz
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc     15847 Jan  8 17:35 start_atlas.sh
[2026-01-08 19:10:16] drwxrwx--x 2 boinc boinc      4096 Jan  8 17:35 shared
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc         0 Jan  8 17:35 boinc_setup_complete
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc      6369 Jan  8 17:35 init_data.xml
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc         0 Jan  8 17:35 boinc_lockfile
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc      2519 Jan  8 17:35 pandaJob.out
[2026-01-08 19:10:16] -rw------- 1 boinc boinc    989837 Jan  8 17:36 agis_schedconf.cvmfs.json
[2026-01-08 19:10:16] -rw------- 1 boinc boinc   1516240 Jan  8 17:36 agis_ddmendpoints.agis.ALL.json
[2026-01-08 19:10:16] drwx------ 5 boinc boinc      4096 Jan  8 17:36 pilot3
[2026-01-08 19:10:16] -rw------- 1 boinc boinc 214285797 Jan  8 19:09 HITS.47898826._020782.pool.root.1
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc       529 Jan  8 19:09 boinc_task_state.xml
[2026-01-08 19:10:16] -rw------- 1 boinc boinc      1017 Jan  8 19:09 memory_monitor_summary.json
[2026-01-08 19:10:16] -rw------- 1 boinc boinc    273635 Jan  8 19:09 log.47898826._020782.job.log.tgz.1
[2026-01-08 19:10:16] -rw------- 1 boinc boinc      7758 Jan  8 19:09 heartbeat.json
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc      8192 Jan  8 19:09 boinc_mmap_file
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc        27 Jan  8 19:09 wrapper_checkpoint.txt
[2026-01-08 19:10:16] -rw------- 1 boinc boinc        95 Jan  8 19:10 pilot_heartbeat.json
[2026-01-08 19:10:16] -rw------- 1 boinc boinc      4824 Jan  8 19:10 pilotlog.txt
[2026-01-08 19:10:16] -rw------- 1 boinc boinc    818328 Jan  8 19:10 log.47898826._020782.job.log.1
[2026-01-08 19:10:16] -rw------- 1 boinc boinc       357 Jan  8 19:10 output.list
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc       620 Jan  8 19:10 runtime_log
[2026-01-08 19:10:16] -rw------- 1 boinc boinc   1116160 Jan  8 19:10 result.tar.gz
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc      8897 Jan  8 19:10 runtime_log.err
[2026-01-08 19:10:16] -rw------- 1 boinc boinc       658 Jan  8 19:10 OnKLDmkD0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOpjKDm4U7LWm.diag
[2026-01-08 19:10:16] -rw-r--r-- 1 boinc boinc     11817 Jan  8 19:10 stderr.txt
[2026-01-08 19:10:16] HITS file was successfully produced:
[2026-01-08 19:10:16] -rw------- 1 boinc boinc 214285797 Jan  8 19:09 shared/HITS.pool.root.1
[2026-01-08 19:10:16]  *** Contents of shared directory: ***
[2026-01-08 19:10:16] total 428868
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc 223135115 Jan  8 17:35 ATLAS.root_0
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc    592404 Jan  8 17:35 input.tar.gz
[2026-01-08 19:10:16] -rw-r--r-- 2 boinc boinc     15847 Jan  8 17:35 start_atlas.sh
[2026-01-08 19:10:16] -rw------- 1 boinc boinc 214285797 Jan  8 19:09 HITS.pool.root.1
[2026-01-08 19:10:16] -rw------- 1 boinc boinc   1116160 Jan  8 19:10 result.tar.gz
19:10:18 (1746248): run_atlas exited; CPU time 21351.600643
19:10:18 (1746248): called boinc_finish(0)

</stderr_txt>
]]>

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