Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:10:08 (955108): wrapper (7.7.26015): starting
00:10:08 (955108): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 00:10:08] Arguments: --nthreads 3
[2026-01-09 00:10:08] Threads: 3
[2026-01-09 00:10:08] Checking for CVMFS
[2026-01-09 00:10:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:10:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:10:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:10:09] 2.9.2.0 955234 0 30072 154923 4 1 20693340 36864000 0 130560 0 0 0.000 1335 1555 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 00:10:09] CVMFS is ok
[2026-01-09 00:10:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:10:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:10:09] Further information can be found at the LHC@home message board.
[2026-01-09 00:10:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:10:09] Checking for apptainer binary...
[2026-01-09 00:10:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:10:09] Running /usr/bin/apptainer --version
[2026-01-09 00:10:09] apptainer version 1.4.1-1.1
[2026-01-09 00:10:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:10:09] atlasA215
[2026-01-09 00:10:09] apptainer works
[2026-01-09 00:10:09] Set ATHENA_PROC_NUMBER=3
[2026-01-09 00:10:09] Set ATHENA_CORE_NUMBER=3
[2026-01-09 00:10:09] Starting ATLAS job with PandaID=6962919219
[2026-01-09 00:10:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:03:48]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean x: 1767917343.5
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean y: 2351457.2735849055
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | intersect: -6294849397.518046
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | chi2: 0.0017136847214232133
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | current chi2=0.0017136847214232133 (change=99.87392745513294 %)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | sum of square deviations: 319447850.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | sum of deviations: 716767324.0000001
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean x: 1767917496.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean y: 2353278.0396039602
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | intersect: -3964445974.6731653
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | chi2: 0.0008967406982238051
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | current chi2=0.0008967406982238051 (change=47.67178075328448 %)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | sum of square deviations: 274312120.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | sum of deviations: 348630798.99999994
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean x: 1767917648.5
[2026-01-09 02:03:48] 2026-01-09 01:03:15,895 | INFO     | mean y: 2354520.1666666665
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | intersect: -2244540521.7394514
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | chi2: 0.0005608125383565326
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | current chi2=0.0005608125383565326 (change=37.461014151878366 %)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | sum of square deviations: 233641590.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | sum of deviations: 90993883.00000003
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | mean x: 1767917801.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | mean y: 2355480.1428571427
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | intersect: -686176495.426267
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | chi2: 0.0003180789647426496
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | current chi2=0.0003180789647426496 (change=43.28247979712016 %)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | sum of square deviations: 197203697.5
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | sum of deviations: 2671617.0000000056
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | mean x: 1767917953.5
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | mean y: 2355846.7674418604
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | intersect: -21595020.883890178
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | chi2: 0.00028191236537033294
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | current chi2=0.00028191236537033294 (change=11.37032101496502 %)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | left removable region: 50
[2026-01-09 02:03:48] 2026-01-09 01:03:15,896 | INFO     | sum of square deviations: 51573060.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | sum of deviations: 18053743.000000007
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | mean x: 1767918533.0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | mean y: 2355096.981818182
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | intersect: -616525125.3613787
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | chi2: 0.00024406036008707452
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | current memory leak: 0.35 B/s (using 55 data points, chi2=0.00)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | could have reported an average CPU frequency of 3940 MHz (7 samples)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | ..............................
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . Timing measurements:
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . get job = 0 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . initial setup = 1 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . payload setup = 2 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . stage-in = 0 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . payload execution = 6754 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . stage-out = 0 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | . log creation = 0 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,897 | INFO     | ..............................
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | 
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | job summary report
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | --------------------------------------------------
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | PanDA job id: 6962919219
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | task id: 47898826
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | errors: (none)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | pilot state: finished 
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | transexitcode: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | exeerrorcode: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | exeerrordiag: 
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | exitcode: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | exitmsg: OK
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | cpuconsumptiontime: 19604 s
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | nevents: 400
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | neventsw: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | pid: 965682
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | pgrp: 965682
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | corecount: 3
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | event service: False
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | sizes: {0: 2283972, 3: 2284234, 11: 2284262, 6760: 2311550, 6761: 2320610, 6766: 2320748}
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | --------------------------------------------------
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | 
[2026-01-09 02:03:48] 2026-01-09 01:03:15,927 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-09 02:03:48] 2026-01-09 01:03:15,938 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | job 6962919219 has completed (purged errors)
[2026-01-09 02:03:48] 2026-01-09 01:03:15,939 | INFO     | overall cleanup function is called
[2026-01-09 02:03:48] 2026-01-09 01:03:16,946 | INFO     | --- collectZombieJob: --- 10, [965682]
[2026-01-09 02:03:48] 2026-01-09 01:03:16,946 | INFO     | zombie collector waiting for pid 965682
[2026-01-09 02:03:48] 2026-01-09 01:03:16,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:03:48] 2026-01-09 01:03:16,946 | INFO     | collected zombie processes
[2026-01-09 02:03:48] 2026-01-09 01:03:16,946 | INFO     | will attempt to kill all subprocesses of pid=965682
[2026-01-09 02:03:48] 2026-01-09 01:03:16,997 | INFO     | process IDs to be killed: [965682] (in reverse order)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,023 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:03:48] 2026-01-09 01:03:17,025 | INFO     | did not find any defunct processes belonging to 965682
[2026-01-09 02:03:48] 2026-01-09 01:03:17,026 | INFO     | did not find any defunct processes belonging to 965682
[2026-01-09 02:03:48] 2026-01-09 01:03:17,026 | INFO     | ready for new job
[2026-01-09 02:03:48] 2026-01-09 01:03:17,026 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:03:48] 2026-01-09 01:03:17,027 | INFO     | ***************************************
[2026-01-09 02:03:48] 2026-01-09 01:03:17,027 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:03:48] 2026-01-09 01:03:17,027 | INFO     | ***************************************
[2026-01-09 02:03:48] 2026-01-09 01:03:17,027 | INFO     | 
[2026-01-09 02:03:48] 2026-01-09 01:03:17,028 | INFO     | architecture information:
[2026-01-09 02:03:48] 2026-01-09 01:03:17,028 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:03:48] 2026-01-09 01:03:17,036 | INFO     | cat /etc/os-release:
[2026-01-09 02:03:48] NAME="CentOS Linux"
[2026-01-09 02:03:48] VERSION="7 (Core)"
[2026-01-09 02:03:48] ID="centos"
[2026-01-09 02:03:48] ID_LIKE="rhel fedora"
[2026-01-09 02:03:48] VERSION_ID="7"
[2026-01-09 02:03:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:03:48] ANSI_COLOR="0;31"
[2026-01-09 02:03:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:03:48] HOME_URL="https://www.centos.org/"
[2026-01-09 02:03:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:03:48] 
[2026-01-09 02:03:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:03:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:03:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:03:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:03:48] 
[2026-01-09 02:03:48] 2026-01-09 01:03:17,036 | INFO     | ***************************************
[2026-01-09 02:03:48] 2026-01-09 01:03:17,227 | WARNING  | process 965682 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6962919219/payload.stdout) since it has not been created yet
[2026-01-09 02:03:48] 2026-01-09 01:03:17,263 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 02:03:48] 2026-01-09 01:03:17,273 | INFO     | sufficient remaining disk space (385442906112 B)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,274 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-09 02:03:48] 2026-01-09 01:03:17,274 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6962919219/HITS.47898826._021144.pool.root.1 since it does not exist
[2026-01-09 02:03:48] 2026-01-09 01:03:17,321 | INFO     | number of running child processes to parent process 965682: 1
[2026-01-09 02:03:48] 2026-01-09 01:03:17,321 | INFO     | maximum number of monitored processes: 6
[2026-01-09 02:03:48] 2026-01-09 01:03:17,321 | INFO     | aborting job monitoring since job object (job id=6962919219) has expired
[2026-01-09 02:03:48] 2026-01-09 01:03:17,539 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 02:03:48] 2026-01-09 01:03:17,550 | INFO     | sufficient remaining disk space (385442906112 B)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | INFO     | update_server=False
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:03:48] 2026-01-09 01:03:17,551 | INFO     | will abort loop
[2026-01-09 02:03:48] 2026-01-09 01:03:17,717 | INFO     | all payload control threads have been joined
[2026-01-09 02:03:48] 2026-01-09 01:03:18,105 | INFO     | all data control threads have been joined
[2026-01-09 02:03:48] 2026-01-09 01:03:18,554 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:18,556 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:18,556 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:18,565 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:18,723 | INFO     | [payload] control thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:18,813 | INFO     | all job control threads have been joined
[2026-01-09 02:03:48] 2026-01-09 01:03:19,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:03:48] 2026-01-09 01:03:19,110 | INFO     | [data] control thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,185 | INFO     | [job] validate thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,190 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,214 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,290 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,724 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:19,819 | INFO     | [job] control thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:20,135 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:21,028 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:21,557 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:24,225 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:03:48] 2026-01-09 01:03:28,349 | INFO     | job.realtimelogging is not enabled
[2026-01-09 02:03:48] 2026-01-09 01:03:29,351 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:03:48] 2026-01-09 01:03:30,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475147958080)>', '<ExcThread(monitor, started 140474790688512)>']
[2026-01-09 02:03:48] 2026-01-09 01:03:35,401 | INFO     | all workflow threads have been joined
[2026-01-09 02:03:48] 2026-01-09 01:03:35,401 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:03:48] 2026-01-09 01:03:35,402 | INFO     | traces error code: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:35,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:03:48] 2026-01-09 01:03:48,038 | INFO     | PID=959234 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 02:03:48] 2026-01-09 01:03:48,038 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:03:48] 2026-01-09 01:03:48,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:03:48] 2026-01-09 01:03:48,039 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:03:48] 2026-01-09 01:03:48,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:03:48] 2026-01-09 01:03:48,039 | INFO     | [monitor] control thread has ended
[2026-01-09 02:03:48] 2026-01-09 01:03:48,084 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:03:48] 2026-01-09 01:03:48,086 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:03:48] 2026-01-09 01:03:48,089 [wrapper] pilotpid: 959234
[2026-01-09 02:03:48] 2026-01-09 01:03:48,091 [wrapper] Pilot exit status: 0
[2026-01-09 02:03:48] 2026-01-09 01:03:48,098 [wrapper] pandaids: 6962919219
[2026-01-09 02:03:48] 2026-01-09 01:03:48,116 [wrapper] cleanup supervisor_pilot  980673 959235
[2026-01-09 02:03:48] 2026-01-09 01:03:48,118 [wrapper] Test setup, not cleaning
[2026-01-09 02:03:48] 2026-01-09 01:03:48,120 [wrapper] apfmon messages muted
[2026-01-09 02:03:48] 2026-01-09 01:03:48,123 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:03:48] 2026-01-09 01:03:48,125 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:03:48]  *** Error codes and diagnostics ***
[2026-01-09 02:03:48]     "exeErrorCode": 0,
[2026-01-09 02:03:48]     "exeErrorDiag": "",
[2026-01-09 02:03:48]     "pilotErrorCode": 0,
[2026-01-09 02:03:48]     "pilotErrorDiag": "",
[2026-01-09 02:03:48]  *** Listing of results directory ***
[2026-01-09 02:03:48] total 445428
[2026-01-09 02:03:48] -rwx------ 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc       100 Jan  9 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:03:48] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 00:10 run_atlas
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc       105 Jan  9 00:10 job.xml
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc 227630356 Jan  9 00:10 EVNT.47898824._000328.pool.root.1
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc    592397 Jan  9 00:10 input.tar.gz
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:10 start_atlas.sh
[2026-01-09 02:03:48] drwxrwx--x 2 boinc boinc      4096 Jan  9 00:10 shared
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:10 boinc_setup_complete
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc      6447 Jan  9 00:10 init_data.xml
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:10 boinc_lockfile
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc      2519 Jan  9 00:10 pandaJob.out
[2026-01-09 02:03:48] -rw------- 1 boinc boinc    989837 Jan  9 00:10 agis_schedconf.cvmfs.json
[2026-01-09 02:03:48] -rw------- 1 boinc boinc   1516240 Jan  9 00:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:03:48] drwx------ 5 boinc boinc      4096 Jan  9 00:10 pilot3
[2026-01-09 02:03:48] -rw------- 1 boinc boinc        95 Jan  9 02:02 pilot_heartbeat.json
[2026-01-09 02:03:48] -rw------- 1 boinc boinc 222043808 Jan  9 02:02 HITS.47898826._021144.pool.root.1
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc       529 Jan  9 02:02 boinc_task_state.xml
[2026-01-09 02:03:48] -rw------- 1 boinc boinc      1019 Jan  9 02:03 memory_monitor_summary.json
[2026-01-09 02:03:48] -rw------- 1 boinc boinc    286419 Jan  9 02:03 log.47898826._021144.job.log.tgz.1
[2026-01-09 02:03:48] -rw------- 1 boinc boinc      7752 Jan  9 02:03 heartbeat.json
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc      8192 Jan  9 02:03 boinc_mmap_file
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc        27 Jan  9 02:03 wrapper_checkpoint.txt
[2026-01-09 02:03:48] -rw------- 1 boinc boinc       746 Jan  9 02:03 pilotlog.txt
[2026-01-09 02:03:48] -rw------- 1 boinc boinc    979459 Jan  9 02:03 log.47898826._021144.job.log.1
[2026-01-09 02:03:48] -rw------- 1 boinc boinc       357 Jan  9 02:03 output.list
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc       620 Jan  9 02:03 runtime_log
[2026-01-09 02:03:48] -rw------- 1 boinc boinc   1290240 Jan  9 02:03 result.tar.gz
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc      8912 Jan  9 02:03 runtime_log.err
[2026-01-09 02:03:48] -rw------- 1 boinc boinc       662 Jan  9 02:03 fQqKDm9D0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVieKDmUV2qQo.diag
[2026-01-09 02:03:48] -rw-r--r-- 1 boinc boinc     21459 Jan  9 02:03 stderr.txt
[2026-01-09 02:03:48] HITS file was successfully produced:
[2026-01-09 02:03:48] -rw------- 1 boinc boinc 222043808 Jan  9 02:02 shared/HITS.pool.root.1
[2026-01-09 02:03:48]  *** Contents of shared directory: ***
[2026-01-09 02:03:48] total 441000
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc 227630356 Jan  9 00:10 ATLAS.root_0
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc    592397 Jan  9 00:10 input.tar.gz
[2026-01-09 02:03:48] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:10 start_atlas.sh
[2026-01-09 02:03:48] -rw------- 1 boinc boinc 222043808 Jan  9 02:02 HITS.pool.root.1
[2026-01-09 02:03:48] -rw------- 1 boinc boinc   1290240 Jan  9 02:03 result.tar.gz
02:03:49 (955108): run_atlas exited; CPU time 19635.405514
02:03:49 (955108): called boinc_finish(0)

</stderr_txt>
]]>

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