Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:43:49 (1332): wrapper (7.7.26015): starting
17:43:49 (1332): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 17:43:49] Arguments: --nthreads 8
[2026-01-08 17:43:49] Threads: 8
[2026-01-08 17:43:49] Checking for CVMFS
[2026-01-08 17:43:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:43:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:43:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:43:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:43:53] 2.11.2.0 820 34229 98096 154914 1 61 23035130 25165824 96 130560 0 15907800 99.828 9853244 3517 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 17:43:53] CVMFS is ok
[2026-01-08 17:43:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:43:53] Checking for apptainer binary...
[2026-01-08 17:43:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:43:53] Running /usr/bin/apptainer --version
[2026-01-08 17:43:53] apptainer version 1.3.2-1.el7
[2026-01-08 17:43:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:44:12] cg-vwn494.simple-grid.lan
[2026-01-08 17:44:12] apptainer works
[2026-01-08 17:44:12] Set ATHENA_PROC_NUMBER=8
[2026-01-08 17:44:12] Set ATHENA_CORE_NUMBER=8
[2026-01-08 17:44:12] Starting ATLAS job with PandaID=6962919172
[2026-01-08 17:44:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 23:28:34]  *** The last 200 lines of the pilot log: ***
[2026-01-08 23:28:34] 2026-01-08 22:27:31,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,481 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 23:28:34] 2026-01-08 22:27:32,482 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-08 23:28:34] 2026-01-08 22:27:32,484 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6962919172/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,485 | INFO     | extracted standard info from prmon json
[2026-01-08 23:28:34] 2026-01-08 22:27:32,485 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:28:34] 2026-01-08 22:27:32,485 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:28:34] 2026-01-08 22:27:32,486 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:28:34] 2026-01-08 22:27:32,486 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:28:34] 2026-01-08 22:27:32,493 | INFO     | fitting pss+swap vs Time
[2026-01-08 23:28:34] 2026-01-08 22:27:32,494 | INFO     | sum of square deviations: 10449170802.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,497 | INFO     | sum of deviations: 170585410662.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,497 | INFO     | mean x: 1767901296.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,497 | INFO     | mean y: 2420961.040247678
[2026-01-08 23:28:34] 2026-01-08 22:27:32,498 | INFO     | intersect: -28859024057.19212
[2026-01-08 23:28:34] 2026-01-08 22:27:32,498 | INFO     | chi2: 8.925812300991566
[2026-01-08 23:28:34] 2026-01-08 22:27:32,499 | INFO     | sum of square deviations: 9971385099.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,502 | INFO     | sum of deviations: 211695003503.50003
[2026-01-08 23:28:34] 2026-01-08 22:27:32,502 | INFO     | mean x: 1767901143.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,502 | INFO     | mean y: 2433951.493710692
[2026-01-08 23:28:34] 2026-01-08 22:27:32,502 | INFO     | intersect: -37530550185.86958
[2026-01-08 23:28:34] 2026-01-08 22:27:32,503 | INFO     | chi2: 7.35630639842787
[2026-01-08 23:28:34] 2026-01-08 22:27:32,503 | INFO     | current chi2=7.35630639842787 (change=17.583899925717013 %)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,503 | INFO     | right removable region: 317
[2026-01-08 23:28:34] 2026-01-08 22:27:32,504 | INFO     | sum of square deviations: 9971385099.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,507 | INFO     | sum of deviations: 58813100834.000015
[2026-01-08 23:28:34] 2026-01-08 22:27:32,507 | INFO     | mean x: 1767901448.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,507 | INFO     | mean y: 2456618.6918238993
[2026-01-08 23:28:34] 2026-01-08 22:27:32,507 | INFO     | intersect: -10424957939.835144
[2026-01-08 23:28:34] 2026-01-08 22:27:32,508 | INFO     | chi2: 4.130507099154709
[2026-01-08 23:28:34] 2026-01-08 22:27:32,508 | INFO     | current chi2=4.130507099154709 (change=53.72402018026021 %)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,508 | INFO     | sum of square deviations: 9508390372.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,512 | INFO     | sum of deviations: -20411446740.999992
[2026-01-08 23:28:34] 2026-01-08 22:27:32,512 | INFO     | mean x: 1767901601.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,512 | INFO     | mean y: 2482673.5239616614
[2026-01-08 23:28:34] 2026-01-08 22:27:32,512 | INFO     | intersect: 3797597089.356458
[2026-01-08 23:28:34] 2026-01-08 22:27:32,512 | INFO     | chi2: 1.819671248663734
[2026-01-08 23:28:34] 2026-01-08 22:27:32,513 | INFO     | current chi2=1.819671248663734 (change=55.94557266258852 %)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,513 | INFO     | sum of square deviations: 9059954057.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,516 | INFO     | sum of deviations: -29749364225.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,516 | INFO     | mean x: 1767901753.5
[2026-01-08 23:28:34] 2026-01-08 22:27:32,517 | INFO     | mean y: 2485826.7564935065
[2026-01-08 23:28:34] 2026-01-08 22:27:32,517 | INFO     | intersect: 5807587359.157302
[2026-01-08 23:28:34] 2026-01-08 22:27:32,517 | INFO     | chi2: 1.7645290469488442
[2026-01-08 23:28:34] 2026-01-08 22:27:32,517 | INFO     | current chi2=1.7645290469488442 (change=3.0303386809778585 %)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,517 | INFO     | left removable region: 30
[2026-01-08 23:28:34] 2026-01-08 22:27:32,518 | INFO     | sum of square deviations: 7330250928.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,520 | INFO     | sum of deviations: -935095230.0000037
[2026-01-08 23:28:34] 2026-01-08 22:27:32,521 | INFO     | mean x: 1767902028.0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,521 | INFO     | mean y: 2505411.254355401
[2026-01-08 23:28:34] 2026-01-08 22:27:32,521 | INFO     | intersect: 228030672.22126523
[2026-01-08 23:28:34] 2026-01-08 22:27:32,521 | INFO     | chi2: 0.005117781359487727
[2026-01-08 23:28:34] 2026-01-08 22:27:32,522 | INFO     | current memory leak: -0.13 B/s (using 287 data points, chi2=0.01)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,522 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | ..............................
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . Timing measurements:
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . get job = 0 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . initial setup = 12 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . payload setup = 147 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . stage-in = 0 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . payload execution = 19831 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . stage-out = 8 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | . log creation = 1 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,523 | INFO     | ..............................
[2026-01-08 23:28:34] 2026-01-08 22:27:32,634 | INFO     | 
[2026-01-08 23:28:34] 2026-01-08 22:27:32,634 | INFO     | job summary report
[2026-01-08 23:28:34] 2026-01-08 22:27:32,634 | INFO     | --------------------------------------------------
[2026-01-08 23:28:34] 2026-01-08 22:27:32,634 | INFO     | PanDA job id: 6962919172
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | task id: 47898826
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | errors: (none)
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | pilot state: finished 
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | transexitcode: 0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | exeerrorcode: 0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | exeerrordiag: 
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | exitcode: 0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | exitmsg: OK
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | cpuconsumptiontime: 73679 s
[2026-01-08 23:28:34] 2026-01-08 22:27:32,635 | INFO     | nevents: 400
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | neventsw: 0
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | pid: 11530
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | pgrp: 11530
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | corecount: 8
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | event service: False
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 13: 2284025, 23: 2284081, 34: 2284109, 45: 2284265, 55: 2284293, 66: 2284321, 77: 2284349, 88: 2284405, 98: 2284713, 10
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | --------------------------------------------------
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | 
[2026-01-08 23:28:34] 2026-01-08 22:27:32,636 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-08 23:28:34] 2026-01-08 22:27:33,225 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,225 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,225 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,225 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,227 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 23:28:34] 2026-01-08 22:27:33,228 | INFO     | job 6962919172 has completed (purged errors)
[2026-01-08 23:28:34] 2026-01-08 22:27:33,228 | INFO     | overall cleanup function is called
[2026-01-08 23:28:34] 2026-01-08 22:27:34,236 | INFO     | --- collectZombieJob: --- 10, [11530]
[2026-01-08 23:28:34] 2026-01-08 22:27:34,236 | INFO     | zombie collector waiting for pid 11530
[2026-01-08 23:28:34] 2026-01-08 22:27:34,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 23:28:34] 2026-01-08 22:27:34,237 | INFO     | collected zombie processes
[2026-01-08 23:28:34] 2026-01-08 22:27:34,237 | INFO     | will attempt to kill all subprocesses of pid=11530
[2026-01-08 23:28:34] 2026-01-08 22:27:34,314 | INFO     | process IDs to be killed: [11530] (in reverse order)
[2026-01-08 23:28:34] 2026-01-08 22:27:35,095 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 23:28:34] 2026-01-08 22:27:35,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 23:28:34] 2026-01-08 22:27:35,097 | INFO     | did not find any defunct processes belonging to 11530
[2026-01-08 23:28:34] 2026-01-08 22:27:35,099 | INFO     | did not find any defunct processes belonging to 11530
[2026-01-08 23:28:34] 2026-01-08 22:27:35,100 | INFO     | ready for new job
[2026-01-08 23:28:34] 2026-01-08 22:27:35,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 23:28:34] 2026-01-08 22:27:35,102 | INFO     | ***************************************
[2026-01-08 23:28:34] 2026-01-08 22:27:35,102 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 23:28:34] 2026-01-08 22:27:35,102 | INFO     | ***************************************
[2026-01-08 23:28:34] 2026-01-08 22:27:35,102 | INFO     | 
[2026-01-08 23:28:34] 2026-01-08 22:27:35,103 | INFO     | pilot is running in a VM
[2026-01-08 23:28:34] 2026-01-08 22:27:35,103 | INFO     | architecture information:
[2026-01-08 23:28:34] 2026-01-08 22:27:35,111 | INFO     | executing command: cat /etc/os-release
[2026-01-08 23:28:34] 2026-01-08 22:27:35,405 | INFO     | cat /etc/os-release:
[2026-01-08 23:28:34] NAME="CentOS Linux"
[2026-01-08 23:28:34] VERSION="7 (Core)"
[2026-01-08 23:28:34] ID="centos"
[2026-01-08 23:28:34] ID_LIKE="rhel fedora"
[2026-01-08 23:28:34] VERSION_ID="7"
[2026-01-08 23:28:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 23:28:34] ANSI_COLOR="0;31"
[2026-01-08 23:28:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 23:28:34] HOME_URL="https://www.centos.org/"
[2026-01-08 23:28:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 23:28:34] 
[2026-01-08 23:28:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 23:28:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 23:28:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 23:28:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 23:28:34] 
[2026-01-08 23:28:34] 2026-01-08 22:27:35,405 | INFO     | ***************************************
[2026-01-08 23:28:34] 2026-01-08 22:27:35,908 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-08 23:28:34] 2026-01-08 22:27:36,161 | INFO     | sufficient remaining disk space (497630052352 B)
[2026-01-08 23:28:34] 2026-01-08 22:27:36,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 23:28:34] 2026-01-08 22:27:36,162 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 23:28:34] 2026-01-08 22:27:36,162 | INFO     | update_server=False
[2026-01-08 23:28:34] 2026-01-08 22:27:36,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 23:28:34] 2026-01-08 22:27:36,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 23:28:34] 2026-01-08 22:27:36,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:28:34] 2026-01-08 22:27:36,164 | INFO     | aborting loop
[2026-01-08 23:28:34] 2026-01-08 22:27:36,917 | INFO     | all payload control threads have been joined
[2026-01-08 23:28:34] 2026-01-08 22:27:37,168 | INFO     | [job] retrieve thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:37,169 | INFO     | [job] job monitor thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:37,180 | INFO     | all data control threads have been joined
[2026-01-08 23:28:34] 2026-01-08 22:27:37,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:28:34] 2026-01-08 22:27:37,676 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:37,787 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:37,847 | INFO     | all job control threads have been joined
[2026-01-08 23:28:34] 2026-01-08 22:27:37,923 | INFO     | [payload] control thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:37,943 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,137 | INFO     | [payload] validate_post thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 23:28:34] 2026-01-08 22:27:38,171 | INFO     | [data] copytool_out thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,186 | INFO     | [data] control thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,436 | INFO     | [data] copytool_in thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,464 | INFO     | [payload] failed_post thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,471 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,654 | INFO     | [job] queue monitor thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,657 | INFO     | [job] validate thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:38,853 | INFO     | [job] control thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:27:42,168 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 23:28:34] 2026-01-08 22:28:04,912 | INFO     | PID=5064 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 23:28:34] 2026-01-08 22:28:04,912 | INFO     | .. there are 2 such processes running
[2026-01-08 23:28:34] 2026-01-08 22:28:04,912 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 23:28:34] 2026-01-08 22:28:04,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 23:28:34] 2026-01-08 22:28:04,913 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 23:28:34] 2026-01-08 22:28:22,890 | INFO     | [monitor] cgroup control has ended
[2026-01-08 23:28:34] 2026-01-08 22:28:23,896 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448236226368)>', '<ExcThread(monitor, started 140447930357504)>']
[2026-01-08 23:28:34] 2026-01-08 22:28:24,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 23:28:34] 2026-01-08 22:28:24,027 | INFO     | [monitor] control thread has ended
[2026-01-08 23:28:34] 2026-01-08 22:28:28,922 | INFO     | all workflow threads have been joined
[2026-01-08 23:28:34] 2026-01-08 22:28:28,922 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 23:28:34] 2026-01-08 22:28:28,923 | INFO     | traces error code: 0
[2026-01-08 23:28:34] 2026-01-08 22:28:28,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 23:28:34] 2026-01-08 22:28:29,300 [wrapper] ==== pilot stdout END ====
[2026-01-08 23:28:34] 2026-01-08 22:28:29,426 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 23:28:34] 2026-01-08 22:28:29,559 [wrapper] pilotpid: 5064
[2026-01-08 23:28:34] 2026-01-08 22:28:29,664 [wrapper] Pilot exit status: 0
[2026-01-08 23:28:34] 2026-01-08 22:28:30,170 [wrapper] pandaids: 6962919172
[2026-01-08 23:28:34] 2026-01-08 22:28:31,384 [wrapper] cleanup supervisor_pilot  9026 5065
[2026-01-08 23:28:34] 2026-01-08 22:28:31,447 [wrapper] Test setup, not cleaning
[2026-01-08 23:28:34] 2026-01-08 22:28:31,556 [wrapper] apfmon messages muted
[2026-01-08 23:28:34] 2026-01-08 22:28:31,650 [wrapper] ==== wrapper stdout END ====
[2026-01-08 23:28:34] 2026-01-08 22:28:31,694 [wrapper] ==== wrapper stderr END ====
[2026-01-08 23:28:34]  *** Error codes and diagnostics ***
[2026-01-08 23:28:34]     "exeErrorCode": 0,
[2026-01-08 23:28:34]     "exeErrorDiag": "",
[2026-01-08 23:28:34]     "pilotErrorCode": 0,
[2026-01-08 23:28:34]     "pilotErrorDiag": "",
[2026-01-08 23:28:34]  *** Listing of results directory ***
[2026-01-08 23:28:34] total 436884
[2026-01-08 23:28:34] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc       100 Jan  8 17:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 23:28:34] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 17:43 run_atlas
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc       105 Jan  8 17:43 job.xml
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc 224704529 Jan  8 17:43 EVNT.47898824._000841.pool.root.1
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 17:43 start_atlas.sh
[2026-01-08 23:28:34] drwxrwx--x. 2 boinc boinc        68 Jan  8 17:43 shared
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc    592402 Jan  8 17:43 input.tar.gz
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc      6389 Jan  8 17:43 init_data.xml
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc         0 Jan  8 17:43 boinc_lockfile
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc      2519 Jan  8 17:44 pandaJob.out
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc    989837 Jan  8 17:48 agis_schedconf.cvmfs.json
[2026-01-08 23:28:34] drwx------. 5 boinc boinc      4096 Jan  8 17:48 pilot3
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc 212266976 Jan  8 23:24 HITS.47898826._021097.pool.root.1
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc       531 Jan  8 23:24 boinc_task_state.xml
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc      1017 Jan  8 23:25 memory_monitor_summary.json
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc   1516240 Jan  8 23:25 agis_ddmendpoints.agis.ALL.json
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc    547574 Jan  8 23:25 log.47898826._021097.job.log.tgz.1
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc        95 Jan  8 23:27 pilot_heartbeat.json
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc      7783 Jan  8 23:27 heartbeat.json
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc      8192 Jan  8 23:28 boinc_mmap_file
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc        28 Jan  8 23:28 wrapper_checkpoint.txt
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc      4883 Jan  8 23:28 pilotlog.txt
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc   2703437 Jan  8 23:28 log.47898826._021097.job.log.1
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc       357 Jan  8 23:28 output.list
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc       620 Jan  8 23:28 runtime_log
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc   3266560 Jan  8 23:28 result.tar.gz
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc      8817 Jan  8 23:28 runtime_log.err
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc       657 Jan  8 23:28 KMgNDm8D0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmheKDm0bKpFo.diag
[2026-01-08 23:28:34] -rw-r--r--. 1 boinc boinc     20783 Jan  8 23:28 stderr.txt
[2026-01-08 23:28:34] HITS file was successfully produced:
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc 212266976 Jan  8 23:24 shared/HITS.pool.root.1
[2026-01-08 23:28:34]  *** Contents of shared directory: ***
[2026-01-08 23:28:34] total 430520
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc 224704529 Jan  8 17:43 ATLAS.root_0
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 17:43 start_atlas.sh
[2026-01-08 23:28:34] -rw-r--r--. 2 boinc boinc    592402 Jan  8 17:43 input.tar.gz
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc 212266976 Jan  8 23:24 HITS.pool.root.1
[2026-01-08 23:28:34] -rw-------. 1 boinc boinc   3266560 Jan  8 23:28 result.tar.gz
23:28:35 (1332): run_atlas exited; CPU time 73874.033799
23:28:35 (1332): called boinc_finish(0)

</stderr_txt>
]]>

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