Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:44:19 (3807230): wrapper (7.7.26015): starting
16:44:19 (3807230): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 16:44:19] Arguments: --nthreads 2
[2026-01-08 16:44:19] Threads: 2
[2026-01-08 16:44:19] Checking for CVMFS
[2026-01-08 16:44:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:44:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:44:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:44:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:44:19] 2.9.2.0 3553530 1388 55828 154912 2 56 18790184 36864000 0 130560 0 663487 99.985 55960 16468 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 16:44:19] CVMFS is ok
[2026-01-08 16:44:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:44:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:44:19] Further information can be found at the LHC@home message board.
[2026-01-08 16:44:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:44:19] Checking for apptainer binary...
[2026-01-08 16:44:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:44:19] Running /usr/bin/apptainer --version
[2026-01-08 16:44:19] apptainer version 1.4.1-1.1
[2026-01-08 16:44:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:44:19] madmaxA277a
[2026-01-08 16:44:19] apptainer works
[2026-01-08 16:44:19] Set ATHENA_PROC_NUMBER=2
[2026-01-08 16:44:19] Set ATHENA_CORE_NUMBER=2
[2026-01-08 16:44:19] Starting ATLAS job with PandaID=6962917043
[2026-01-08 16:44:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 19:34:54]  *** The last 200 lines of the pilot log: ***
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | job 6962917043 has completed (purged errors)
[2026-01-08 19:34:54] 2026-01-08 18:34:22,955 | INFO     | overall cleanup function is called
[2026-01-08 19:34:54] 2026-01-08 18:34:23,961 | INFO     | --- collectZombieJob: --- 10, [3817361]
[2026-01-08 19:34:54] 2026-01-08 18:34:23,962 | INFO     | zombie collector waiting for pid 3817361
[2026-01-08 19:34:54] 2026-01-08 18:34:23,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 19:34:54] 2026-01-08 18:34:23,962 | INFO     | collected zombie processes
[2026-01-08 19:34:54] 2026-01-08 18:34:23,962 | INFO     | will attempt to kill all subprocesses of pid=3817361
[2026-01-08 19:34:54] 2026-01-08 18:34:23,995 | INFO     | process IDs to be killed: [3817361] (in reverse order)
[2026-01-08 19:34:54] 2026-01-08 18:34:24,015 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 19:34:54] 2026-01-08 18:34:24,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 19:34:54] 2026-01-08 18:34:24,016 | INFO     | did not find any defunct processes belonging to 3817361
[2026-01-08 19:34:54] 2026-01-08 18:34:24,016 | INFO     | did not find any defunct processes belonging to 3817361
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | ready for new job
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | ***************************************
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | ***************************************
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | 
[2026-01-08 19:34:54] 2026-01-08 18:34:24,017 | INFO     | architecture information:
[2026-01-08 19:34:54] 2026-01-08 18:34:24,018 | INFO     | executing command: cat /etc/os-release
[2026-01-08 19:34:54] 2026-01-08 18:34:24,026 | INFO     | cat /etc/os-release:
[2026-01-08 19:34:54] NAME="CentOS Linux"
[2026-01-08 19:34:54] VERSION="7 (Core)"
[2026-01-08 19:34:54] ID="centos"
[2026-01-08 19:34:54] ID_LIKE="rhel fedora"
[2026-01-08 19:34:54] VERSION_ID="7"
[2026-01-08 19:34:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 19:34:54] ANSI_COLOR="0;31"
[2026-01-08 19:34:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 19:34:54] HOME_URL="https://www.centos.org/"
[2026-01-08 19:34:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 19:34:54] 
[2026-01-08 19:34:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 19:34:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 19:34:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 19:34:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 19:34:54] 
[2026-01-08 19:34:54] 2026-01-08 18:34:24,026 | INFO     | ***************************************
[2026-01-08 19:34:54] 2026-01-08 18:34:24,529 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | INFO     | sufficient remaining disk space (499872956416 B)
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | INFO     | update_server=False
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 19:34:54] 2026-01-08 18:34:24,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:34:54] 2026-01-08 18:34:24,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 19:34:54] 2026-01-08 18:34:24,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:34:54] 2026-01-08 18:34:24,711 | INFO     | aborting loop
[2026-01-08 19:34:54] 2026-01-08 18:34:25,190 | INFO     | all job control threads have been joined
[2026-01-08 19:34:54] 2026-01-08 18:34:25,370 | INFO     | all data control threads have been joined
[2026-01-08 19:34:54] 2026-01-08 18:34:25,547 | INFO     | [job] queue monitor thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:25,548 | INFO     | [job] retrieve thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:25,612 | INFO     | [payload] validate_post thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:25,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 19:34:54] 2026-01-08 18:34:25,679 | INFO     | [data] copytool_in thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:25,717 | INFO     | [job] job monitor thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:25,762 | INFO     | all payload control threads have been joined
[2026-01-08 19:34:54] 2026-01-08 18:34:26,196 | INFO     | [job] control thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,227 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,240 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,308 | INFO     | [job] validate thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,372 | INFO     | [data] control thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,442 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,562 | INFO     | [data] copytool_out thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,741 | INFO     | [payload] failed_post thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:26,768 | INFO     | [payload] control thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:29,653 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:35,302 | INFO     | job.realtimelogging is not enabled
[2026-01-08 19:34:54] 2026-01-08 18:34:36,308 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 19:34:54] 2026-01-08 18:34:46,037 | INFO     | [monitor] cgroup control has ended
[2026-01-08 19:34:54] 2026-01-08 18:34:47,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897305859904)>', '<ExcThread(monitor, started 139896664610560)>']
[2026-01-08 19:34:54] 2026-01-08 18:34:52,225 | INFO     | all workflow threads have been joined
[2026-01-08 19:34:54] 2026-01-08 18:34:52,226 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 19:34:54] 2026-01-08 18:34:52,226 | INFO     | traces error code: 0
[2026-01-08 19:34:54] 2026-01-08 18:34:52,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | INFO     | PID=3810940 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 19:34:54] 2026-01-08 18:34:54,685 | INFO     | [monitor] control thread has ended
[2026-01-08 19:34:54] 2026-01-08 18:34:54,723 [wrapper] ==== pilot stdout END ====
[2026-01-08 19:34:54] 2026-01-08 18:34:54,726 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 19:34:54] 2026-01-08 18:34:54,728 [wrapper] pilotpid: 3810940
[2026-01-08 19:34:54] 2026-01-08 18:34:54,730 [wrapper] Pilot exit status: 0
[2026-01-08 19:34:54] 2026-01-08 18:34:54,736 [wrapper] pandaids: 6962917043
[2026-01-08 19:34:54] 2026-01-08 18:34:54,747 [wrapper] cleanup supervisor_pilot 3836475 3810941
[2026-01-08 19:34:54] 2026-01-08 18:34:54,749 [wrapper] Test setup, not cleaning
[2026-01-08 19:34:54] 2026-01-08 18:34:54,751 [wrapper] apfmon messages muted
[2026-01-08 19:34:54] 2026-01-08 18:34:54,753 [wrapper] ==== wrapper stdout END ====
[2026-01-08 19:34:54] 2026-01-08 18:34:54,755 [wrapper] ==== wrapper stderr END ====
[2026-01-08 19:34:54]  *** Error codes and diagnostics ***
[2026-01-08 19:34:54]     "exeErrorCode": 0,
[2026-01-08 19:34:54]     "exeErrorDiag": "",
[2026-01-08 19:34:54]     "pilotErrorCode": 0,
[2026-01-08 19:34:54]     "pilotErrorDiag": "",
[2026-01-08 19:34:54]  *** Listing of results directory ***
[2026-01-08 19:34:54] total 439560
[2026-01-08 19:34:54] -rwx------ 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:10 pilot3.tar.gz
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:10 queuedata.json
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc       100 Jan  8 16:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 19:34:54] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 16:44 run_atlas
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc       105 Jan  8 16:44 job.xml
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc 225256151 Jan  8 16:44 EVNT.47898824._000636.pool.root.1
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc    592403 Jan  8 16:44 input.tar.gz
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:44 start_atlas.sh
[2026-01-08 19:34:54] drwxrwx--x 2 boinc boinc      4096 Jan  8 16:44 shared
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:44 boinc_setup_complete
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc      6209 Jan  8 16:44 init_data.xml
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:44 boinc_lockfile
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc      2519 Jan  8 16:44 pandaJob.out
[2026-01-08 19:34:54] -rw------- 1 boinc boinc    989843 Jan  8 16:44 agis_schedconf.cvmfs.json
[2026-01-08 19:34:54] -rw------- 1 boinc boinc   1516240 Jan  8 16:44 agis_ddmendpoints.agis.ALL.json
[2026-01-08 19:34:54] drwx------ 5 boinc boinc      4096 Jan  8 16:44 pilot3
[2026-01-08 19:34:54] -rw------- 1 boinc boinc 217408334 Jan  8 19:33 HITS.47898826._019343.pool.root.1
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc       531 Jan  8 19:34 boinc_task_state.xml
[2026-01-08 19:34:54] -rw------- 1 boinc boinc      1021 Jan  8 19:34 memory_monitor_summary.json
[2026-01-08 19:34:54] -rw------- 1 boinc boinc    322186 Jan  8 19:34 log.47898826._019343.job.log.tgz.1
[2026-01-08 19:34:54] -rw------- 1 boinc boinc        95 Jan  8 19:34 pilot_heartbeat.json
[2026-01-08 19:34:54] -rw------- 1 boinc boinc      7773 Jan  8 19:34 heartbeat.json
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc      8192 Jan  8 19:34 boinc_mmap_file
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc        28 Jan  8 19:34 wrapper_checkpoint.txt
[2026-01-08 19:34:54] -rw------- 1 boinc boinc       747 Jan  8 19:34 pilotlog.txt
[2026-01-08 19:34:54] -rw------- 1 boinc boinc   1449031 Jan  8 19:34 log.47898826._019343.job.log.1
[2026-01-08 19:34:54] -rw------- 1 boinc boinc       357 Jan  8 19:34 output.list
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc       620 Jan  8 19:34 runtime_log
[2026-01-08 19:34:54] -rw------- 1 boinc boinc   1792000 Jan  8 19:34 result.tar.gz
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc      8923 Jan  8 19:34 runtime_log.err
[2026-01-08 19:34:54] -rw------- 1 boinc boinc       666 Jan  8 19:34 W28KDmBD0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTljKDmqP86Dm.diag
[2026-01-08 19:34:54] -rw-r--r-- 1 boinc boinc     11823 Jan  8 19:34 stderr.txt
[2026-01-08 19:34:54] HITS file was successfully produced:
[2026-01-08 19:34:54] -rw------- 1 boinc boinc 217408334 Jan  8 19:33 shared/HITS.pool.root.1
[2026-01-08 19:34:54]  *** Contents of shared directory: ***
[2026-01-08 19:34:54] total 434652
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc 225256151 Jan  8 16:44 ATLAS.root_0
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc    592403 Jan  8 16:44 input.tar.gz
[2026-01-08 19:34:54] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:44 start_atlas.sh
[2026-01-08 19:34:54] -rw------- 1 boinc boinc 217408334 Jan  8 19:33 HITS.pool.root.1
[2026-01-08 19:34:54] -rw------- 1 boinc boinc   1792000 Jan  8 19:34 result.tar.gz
19:34:56 (3807230): run_atlas exited; CPU time 19973.331174
19:34:56 (3807230): called boinc_finish(0)

</stderr_txt>
]]>

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