Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:54:28 (1516846): wrapper (7.7.26015): starting
09:54:28 (1516846): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:54:28] Arguments: --nthreads 8
[2026-01-08 09:54:28] Threads: 8
[2026-01-08 09:54:28] Checking for CVMFS
[2026-01-08 09:54:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:54:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:54:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:54:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:54:28] 2.13.3.0 10119 20214 171568 154910 2 393 32892626 39288833 7221 16776704 0 8848192 99.536 14639125 42960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 09:54:28] CVMFS is ok
[2026-01-08 09:54:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:54:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:54:28] Further information can be found at the LHC@home message board.
[2026-01-08 09:54:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:54:28] Checking for apptainer binary...
[2026-01-08 09:54:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:54:28] Running /usr/bin/apptainer --version
[2026-01-08 09:54:28] apptainer version 1.4.5-2.el9
[2026-01-08 09:54:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:54:29] c-210-1.aglt2.org
[2026-01-08 09:54:29] apptainer works
[2026-01-08 09:54:29] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:54:29] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:54:29] Starting ATLAS job with PandaID=6962918587
[2026-01-08 09:54:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:39:50]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:39:50] 2026-01-08 22:39:00,418 | INFO     | mean x: 1767897920.5848215
[2026-01-08 17:39:50] 2026-01-08 22:39:00,418 | INFO     | mean y: 2492678.7566964286
[2026-01-08 17:39:50] 2026-01-08 22:39:00,419 | INFO     | intersect: -15284522618.970505
[2026-01-08 17:39:50] 2026-01-08 22:39:00,419 | INFO     | chi2: 3.4910735029963287
[2026-01-08 17:39:50] 2026-01-08 22:39:00,419 | INFO     | current chi2=3.4910735029963287 (change=-0.004221207655591792 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,420 | INFO     | right removable region: 447
[2026-01-08 17:39:50] 2026-01-08 22:39:00,420 | INFO     | sum of square deviations: 27879668465.265625
[2026-01-08 17:39:50] 2026-01-08 22:39:00,426 | INFO     | sum of deviations: 118455775330.51561
[2026-01-08 17:39:50] 2026-01-08 22:39:00,426 | INFO     | mean x: 1767898225.578125
[2026-01-08 17:39:50] 2026-01-08 22:39:00,426 | INFO     | mean y: 2513594.542410714
[2026-01-08 17:39:50] 2026-01-08 22:39:00,426 | INFO     | intersect: -7508972966.971273
[2026-01-08 17:39:50] 2026-01-08 22:39:00,427 | INFO     | chi2: 0.6131637748328271
[2026-01-08 17:39:50] 2026-01-08 22:39:00,427 | INFO     | current chi2=0.6131637748328271 (change=82.43549850145689 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,428 | INFO     | sum of square deviations: 26956433034.740433
[2026-01-08 17:39:50] 2026-01-08 22:39:00,452 | INFO     | sum of deviations: 63464698679.09261
[2026-01-08 17:39:50] 2026-01-08 22:39:00,453 | INFO     | mean x: 1767898378.0857787
[2026-01-08 17:39:50] 2026-01-08 22:39:00,453 | INFO     | mean y: 2522670.7607223475
[2026-01-08 17:39:50] 2026-01-08 22:39:00,453 | INFO     | intersect: -4159717107.6206565
[2026-01-08 17:39:50] 2026-01-08 22:39:00,454 | INFO     | chi2: 0.11108654990617858
[2026-01-08 17:39:50] 2026-01-08 22:39:00,454 | INFO     | current chi2=0.11108654990617858 (change=81.8830540117173 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,455 | INFO     | sum of square deviations: 26053748471.27846
[2026-01-08 17:39:50] 2026-01-08 22:39:00,460 | INFO     | sum of deviations: 40635968023.98628
[2026-01-08 17:39:50] 2026-01-08 22:39:00,460 | INFO     | mean x: 1767898530.5981736
[2026-01-08 17:39:50] 2026-01-08 22:39:00,460 | INFO     | mean y: 2526519.2328767125
[2026-01-08 17:39:50] 2026-01-08 22:39:00,460 | INFO     | intersect: -2754860512.358225
[2026-01-08 17:39:50] 2026-01-08 22:39:00,461 | INFO     | chi2: 0.0178877391896198
[2026-01-08 17:39:50] 2026-01-08 22:39:00,461 | INFO     | current chi2=0.0178877391896198 (change=83.89747525264993 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,462 | INFO     | sum of square deviations: 25171489577.113197
[2026-01-08 17:39:50] 2026-01-08 22:39:00,467 | INFO     | sum of deviations: 37464183776.251755
[2026-01-08 17:39:50] 2026-01-08 22:39:00,467 | INFO     | mean x: 1767898683.1062355
[2026-01-08 17:39:50] 2026-01-08 22:39:00,467 | INFO     | mean y: 2527063.277136259
[2026-01-08 17:39:50] 2026-01-08 22:39:00,468 | INFO     | intersect: -2628738796.408289
[2026-01-08 17:39:50] 2026-01-08 22:39:00,468 | INFO     | chi2: 0.007957460523835808
[2026-01-08 17:39:50] 2026-01-08 22:39:00,469 | INFO     | current chi2=0.007957460523835808 (change=55.51444238155319 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,469 | INFO     | sum of square deviations: 24309397495.616825
[2026-01-08 17:39:50] 2026-01-08 22:39:00,474 | INFO     | sum of deviations: 35177822213.82708
[2026-01-08 17:39:50] 2026-01-08 22:39:00,475 | INFO     | mean x: 1767898835.6121495
[2026-01-08 17:39:50] 2026-01-08 22:39:00,475 | INFO     | mean y: 2527467.2640186916
[2026-01-08 17:39:50] 2026-01-08 22:39:00,475 | INFO     | intersect: -2555776618.3230305
[2026-01-08 17:39:50] 2026-01-08 22:39:00,476 | INFO     | chi2: 0.007730294079042397
[2026-01-08 17:39:50] 2026-01-08 22:39:00,476 | INFO     | current chi2=0.007730294079042397 (change=2.854760562279325 %)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,476 | INFO     | left removable region: 50
[2026-01-08 17:39:50] 2026-01-08 22:39:00,476 | INFO     | sum of square deviations: 19400927692.02518
[2026-01-08 17:39:50] 2026-01-08 22:39:00,481 | INFO     | sum of deviations: 33217011777.57931
[2026-01-08 17:39:50] 2026-01-08 22:39:00,481 | INFO     | mean x: 1767899415.070529
[2026-01-08 17:39:50] 2026-01-08 22:39:00,481 | INFO     | mean y: 2527349.6221662466
[2026-01-08 17:39:50] 2026-01-08 22:39:00,482 | INFO     | intersect: -3024355520.319779
[2026-01-08 17:39:50] 2026-01-08 22:39:00,482 | INFO     | chi2: 0.006288953765909526
[2026-01-08 17:39:50] 2026-01-08 22:39:00,482 | INFO     | current memory leak: 1.71 B/s (using 397 data points, chi2=0.01)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,483 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | ..............................
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . Timing measurements:
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . get job = 1 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . initial setup = 4 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . payload setup = 61 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . stage-in = 0 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . payload execution = 27660 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . stage-out = 3 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,484 | INFO     | . log creation = 0 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,485 | INFO     | ..............................
[2026-01-08 17:39:50] 2026-01-08 22:39:00,975 | INFO     | time since job start (27849s) is within the limit (174528.0s)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,986 | INFO     | 
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | job summary report
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | --------------------------------------------------
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | PanDA job id: 6962918587
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | task id: 47898826
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | errors: (none)
[2026-01-08 17:39:50] 2026-01-08 22:39:00,987 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | pilot state: finished 
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | transexitcode: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | exeerrorcode: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | exeerrordiag: 
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | exitcode: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | exitmsg: OK
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | cpuconsumptiontime: 69514 s
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | nevents: 400
[2026-01-08 17:39:50] 2026-01-08 22:39:00,988 | INFO     | neventsw: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | pid: 1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | pgrp: 1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | corecount: 8
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | event service: False
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 14: 2284025, 26: 2284053, 37: 2284081, 39: 2284499, 48: 2284527, 27726: 2321429, 27727: 2321428, 27732: 2330510, 27735:
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | --------------------------------------------------
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | 
[2026-01-08 17:39:50] 2026-01-08 22:39:00,989 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 17:39:50] 2026-01-08 22:39:01,045 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,045 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,045 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:39:50] 2026-01-08 22:39:01,047 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,048 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:39:50] 2026-01-08 22:39:01,048 | INFO     | job 6962918587 has completed (purged errors)
[2026-01-08 17:39:50] 2026-01-08 22:39:01,048 | INFO     | overall cleanup function is called
[2026-01-08 17:39:50] 2026-01-08 22:39:02,061 | INFO     | --- collectZombieJob: --- 10, [1530829]
[2026-01-08 17:39:50] 2026-01-08 22:39:02,062 | INFO     | zombie collector waiting for pid 1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:02,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:39:50] 2026-01-08 22:39:02,062 | INFO     | collected zombie processes
[2026-01-08 17:39:50] 2026-01-08 22:39:02,062 | INFO     | will attempt to kill all subprocesses of pid=1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:05,679 | INFO     | process IDs to be killed: [1530829] (in reverse order)
[2026-01-08 17:39:50] 2026-01-08 22:39:05,966 | INFO     | PID=1520737 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 17:39:50] 2026-01-08 22:39:05,966 | INFO     | .. there are 7 such processes running
[2026-01-08 17:39:50] 2026-01-08 22:39:07,064 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:39:50] 2026-01-08 22:39:07,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:39:50] 2026-01-08 22:39:07,151 | INFO     | did not find any defunct processes belonging to 1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:07,310 | INFO     | did not find any defunct processes belonging to 1530829
[2026-01-08 17:39:50] 2026-01-08 22:39:07,310 | INFO     | ready for new job
[2026-01-08 17:39:50] 2026-01-08 22:39:07,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:39:50] 2026-01-08 22:39:07,314 | INFO     | ***************************************
[2026-01-08 17:39:50] 2026-01-08 22:39:07,314 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:39:50] 2026-01-08 22:39:07,314 | INFO     | ***************************************
[2026-01-08 17:39:50] 2026-01-08 22:39:07,314 | INFO     | 
[2026-01-08 17:39:50] 2026-01-08 22:39:07,339 | INFO     | architecture information:
[2026-01-08 17:39:50] 2026-01-08 22:39:07,355 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:39:50] 2026-01-08 22:39:07,434 | INFO     | cat /etc/os-release:
[2026-01-08 17:39:50] NAME="CentOS Linux"
[2026-01-08 17:39:50] VERSION="7 (Core)"
[2026-01-08 17:39:50] ID="centos"
[2026-01-08 17:39:50] ID_LIKE="rhel fedora"
[2026-01-08 17:39:50] VERSION_ID="7"
[2026-01-08 17:39:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:39:50] ANSI_COLOR="0;31"
[2026-01-08 17:39:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:39:50] HOME_URL="https://www.centos.org/"
[2026-01-08 17:39:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:39:50] 
[2026-01-08 17:39:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:39:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:39:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:39:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:39:50] 
[2026-01-08 17:39:50] 2026-01-08 22:39:07,434 | INFO     | ***************************************
[2026-01-08 17:39:50] 2026-01-08 22:39:07,938 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 17:39:50] 2026-01-08 22:39:08,153 | INFO     | sufficient remaining disk space (53090451456 B)
[2026-01-08 17:39:50] 2026-01-08 22:39:08,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:39:50] 2026-01-08 22:39:08,154 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:39:50] 2026-01-08 22:39:08,154 | INFO     | update_server=False
[2026-01-08 17:39:50] 2026-01-08 22:39:08,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:39:50] 2026-01-08 22:39:08,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:39:50] 2026-01-08 22:39:08,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:39:50] 2026-01-08 22:39:08,321 | INFO     | all job control threads have been joined
[2026-01-08 17:39:50] 2026-01-08 22:39:08,419 | INFO     | all data control threads have been joined
[2026-01-08 17:39:50] 2026-01-08 22:39:08,638 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 17:39:50] 2026-01-08 22:39:08,639 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 17:39:50] 2026-01-08 22:39:08,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:39:50] 2026-01-08 22:39:08,639 | INFO     | will abort loop
[2026-01-08 17:39:50] 2026-01-08 22:39:08,928 | INFO     | all payload control threads have been joined
[2026-01-08 17:39:50] 2026-01-08 22:39:09,160 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,277 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,327 | INFO     | [job] control thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,357 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,422 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,428 | INFO     | [job] validate thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,432 | INFO     | [data] control thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,509 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,542 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,645 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,663 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:09,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:39:50] 2026-01-08 22:39:09,935 | INFO     | [payload] control thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:10,179 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:10,520 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:10,907 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:12,304 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:39:50] 2026-01-08 22:39:39,939 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:39:50] 2026-01-08 22:39:40,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692417869632)>', '<ExcThread(monitor, started 140692137412352)>']
[2026-01-08 17:39:50] 2026-01-08 22:39:41,434 | INFO     | PID=1520737 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 17:39:50] 2026-01-08 22:39:41,434 | INFO     | .. there are 7 such processes running
[2026-01-08 17:39:50] 2026-01-08 22:39:41,434 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:39:50] 2026-01-08 22:39:41,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:39:50] 2026-01-08 22:39:41,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:39:50] 2026-01-08 22:39:41,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:39:50] 2026-01-08 22:39:41,481 | INFO     | [monitor] control thread has ended
[2026-01-08 17:39:50] 2026-01-08 22:39:46,019 | INFO     | all workflow threads have been joined
[2026-01-08 17:39:50] 2026-01-08 22:39:46,020 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:39:50] 2026-01-08 22:39:46,020 | INFO     | traces error code: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:46,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:39:50] 2026-01-08 22:39:47,658 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:39:50] 2026-01-08 22:39:47,840 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:39:50] 2026-01-08 22:39:47,884 [wrapper] pilotpid: 1520737
[2026-01-08 17:39:50] 2026-01-08 22:39:47,921 [wrapper] Pilot exit status: 0
[2026-01-08 17:39:50] 2026-01-08 22:39:48,121 [wrapper] pandaids: 6962918587
[2026-01-08 17:39:50] 2026-01-08 22:39:48,713 [wrapper] cleanup supervisor_pilot 2188423 1520738
[2026-01-08 17:39:50] 2026-01-08 22:39:48,777 [wrapper] Test setup, not cleaning
[2026-01-08 17:39:50] 2026-01-08 22:39:48,860 [wrapper] apfmon messages muted
[2026-01-08 17:39:50] 2026-01-08 22:39:48,917 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:39:50] 2026-01-08 22:39:48,993 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:39:50]  *** Error codes and diagnostics ***
[2026-01-08 17:39:50]     "exeErrorCode": 0,
[2026-01-08 17:39:50]     "exeErrorDiag": "",
[2026-01-08 17:39:50]     "pilotErrorCode": 0,
[2026-01-08 17:39:50]     "pilotErrorDiag": "",
[2026-01-08 17:39:50]  *** Listing of results directory ***
[2026-01-08 17:39:50] total 446320
[2026-01-08 17:39:50] -rwx------. 1 boincer umatlas     36322 Jan  8 03:06 runpilot2-wrapper.sh
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas       100 Jan  8 09:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:39:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 09:54 run_atlas
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas       105 Jan  8 09:54 job.xml
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas 222779937 Jan  8 09:54 EVNT.47898824._000801.pool.root.1
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 09:54 start_atlas.sh
[2026-01-08 17:39:50] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 09:54 shared
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas    592396 Jan  8 09:54 input.tar.gz
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas         0 Jan  8 09:54 boinc_lockfile
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 09:54 pandaJob.out
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas        57 Jan  8 09:54 setup.sh.local
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas    989835 Jan  8 09:54 agis_schedconf.cvmfs.json
[2026-01-08 17:39:50] drwx------. 5 boincer umatlas      4096 Jan  8 09:54 pilot3
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas 221856736 Jan  8 17:37 HITS.47898826._020635.pool.root.1
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas       531 Jan  8 17:37 boinc_task_state.xml
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas      1038 Jan  8 17:38 memory_monitor_summary.json
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas   1516240 Jan  8 17:38 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas    637088 Jan  8 17:38 log.47898826._020635.job.log.tgz.1
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas        95 Jan  8 17:38 pilot_heartbeat.json
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas      7820 Jan  8 17:39 heartbeat.json
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas      5009 Jan  8 17:39 pilotlog.txt
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas      6659 Jan  8 17:39 init_data.xml
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas   3601938 Jan  8 17:39 log.47898826._020635.job.log.1
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 17:39 boinc_mmap_file
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas        28 Jan  8 17:39 wrapper_checkpoint.txt
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas       357 Jan  8 17:39 output.list
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas       620 Jan  8 17:39 runtime_log
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas   4259840 Jan  8 17:39 result.tar.gz
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas      9338 Jan  8 17:39 runtime_log.err
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas       656 Jan  8 17:39 3h1KDmZD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNgeKDm9iQESn.diag
[2026-01-08 17:39:50] -rw-r--r--. 1 boincer umatlas     20962 Jan  8 17:39 stderr.txt
[2026-01-08 17:39:50] HITS file was successfully produced:
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas 221856736 Jan  8 17:37 shared/HITS.pool.root.1
[2026-01-08 17:39:50]  *** Contents of shared directory: ***
[2026-01-08 17:39:50] total 438980
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas 222779937 Jan  8 09:54 ATLAS.root_0
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 09:54 start_atlas.sh
[2026-01-08 17:39:50] -rw-r--r--. 2 boincer umatlas    592396 Jan  8 09:54 input.tar.gz
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas 221856736 Jan  8 17:37 HITS.pool.root.1
[2026-01-08 17:39:50] -rw-------. 1 boincer umatlas   4259840 Jan  8 17:39 result.tar.gz
17:40:11 (1516846): run_atlas exited; CPU time 70181.902088
17:40:11 (1516846): called boinc_finish(0)

</stderr_txt>
]]>

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