Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:37 (4153666): wrapper (7.7.26015): starting
04:36:37 (4153666): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 04:36:37] Arguments: --nthreads 4
[2026-01-11 04:36:37] Threads: 4
[2026-01-11 04:36:37] Checking for CVMFS
[2026-01-11 04:36:37] No cvmfs_config command found, will try listing directly
[2026-01-11 04:36:37] CVMFS is ok
[2026-01-11 04:36:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 04:36:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 04:36:37] Further information can be found at the LHC@home message board.
[2026-01-11 04:36:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 04:36:37] Checking for apptainer binary...
[2026-01-11 04:36:37] which: no apptainer in ((null))
[2026-01-11 04:36:37] apptainer is not installed, using version from CVMFS
[2026-01-11 04:36:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 04:36:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-01-11 04:36:37] apptainer works
[2026-01-11 04:36:37] Set ATHENA_PROC_NUMBER=4
[2026-01-11 04:36:37] Set ATHENA_CORE_NUMBER=4
[2026-01-11 04:36:37] Starting ATLAS job with PandaID=6962918726
[2026-01-11 04:36:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 09:02:30]  *** The last 200 lines of the pilot log: ***
[2026-01-11 09:02:30] 2026-01-11 07:58:30,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:02:30] 2026-01-11 07:58:30,430 | INFO     | time since job start (15701s) is within the limit (174528.0s)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,435 | INFO     | time since job start (15703s) is within the limit (174528.0s)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,681 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 09:02:30] 2026-01-11 07:58:32,692 | INFO     | monitor loop #1125: job 0:6962918726 is in state 'finished'
[2026-01-11 09:02:30] 2026-01-11 07:58:32,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,693 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2586.7161562499996
[2026-01-11 09:02:30] 2026-01-11 07:58:32,706 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6962918726/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,707 | INFO     | extracted standard info from prmon json
[2026-01-11 09:02:30] 2026-01-11 07:58:32,708 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 09:02:30] 2026-01-11 07:58:32,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 09:02:30] 2026-01-11 07:58:32,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 09:02:30] 2026-01-11 07:58:32,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 09:02:30] 2026-01-11 07:58:32,714 | INFO     | fitting pss+swap vs Time
[2026-01-11 09:02:30] 2026-01-11 07:58:32,714 | INFO     | sum of square deviations: 5263458688.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,716 | INFO     | sum of deviations: 10707537765.999992
[2026-01-11 09:02:30] 2026-01-11 07:58:32,716 | INFO     | mean x: 1768110445.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,717 | INFO     | mean y: 2335800.058365759
[2026-01-11 09:02:30] 2026-01-11 07:58:32,717 | INFO     | intersect: -3594559414.0067306
[2026-01-11 09:02:30] 2026-01-11 07:58:32,717 | INFO     | chi2: 1.381502461862099
[2026-01-11 09:02:30] 2026-01-11 07:58:32,718 | INFO     | sum of square deviations: 4962187923.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,719 | INFO     | sum of deviations: 10474434623.000002
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | mean x: 1768110292.5
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | mean y: 2335682.0396825396
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | intersect: -3729880016.443581
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | chi2: 1.381865658982365
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | current chi2=1.381865658982365 (change=-0.02629000890642317 %)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,720 | INFO     | right removable region: 251
[2026-01-11 09:02:30] 2026-01-11 07:58:32,721 | INFO     | sum of square deviations: 4962187923.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,723 | INFO     | sum of deviations: -21420068138.000004
[2026-01-11 09:02:30] 2026-01-11 07:58:32,723 | INFO     | mean x: 1768110597.5
[2026-01-11 09:02:30] 2026-01-11 07:58:32,723 | INFO     | mean y: 2351890.904761905
[2026-01-11 09:02:30] 2026-01-11 07:58:32,723 | INFO     | intersect: 7634680626.063368
[2026-01-11 09:02:30] 2026-01-11 07:58:32,724 | INFO     | chi2: 0.06686033427626673
[2026-01-11 09:02:30] 2026-01-11 07:58:32,724 | INFO     | current chi2=0.06686033427626673 (change=95.160317399207 %)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,724 | INFO     | sum of square deviations: 4672638308.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | sum of deviations: -17554529552.999996
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | mean x: 1768110750.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | mean y: 2349844.5627530366
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | intersect: 6644925273.675549
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | chi2: 0.05989052074614776
[2026-01-11 09:02:30] 2026-01-11 07:58:32,726 | INFO     | current chi2=0.05989052074614776 (change=10.424437157791818 %)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,727 | INFO     | left removable region: 20
[2026-01-11 09:02:30] 2026-01-11 07:58:32,727 | INFO     | sum of square deviations: 3822136780.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,728 | INFO     | sum of deviations: -7926131563.000005
[2026-01-11 09:02:30] 2026-01-11 07:58:32,728 | INFO     | mean x: 1768110872.0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,729 | INFO     | mean y: 2344614.9956709957
[2026-01-11 09:02:30] 2026-01-11 07:58:32,729 | INFO     | intersect: 3668953163.0661726
[2026-01-11 09:02:30] 2026-01-11 07:58:32,729 | INFO     | chi2: 0.03830479206220614
[2026-01-11 09:02:30] 2026-01-11 07:58:32,729 | INFO     | current memory leak: -2.07 B/s (using 231 data points, chi2=0.04)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | could have reported an average CPU frequency of 2556 MHz (12 samples)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | ..............................
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . Timing measurements:
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . get job = 0 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . initial setup = 1 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . payload setup = 6 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . stage-in = 0 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . payload execution = 15670 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . stage-out = 1 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | . log creation = 0 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,730 | INFO     | ..............................
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | 
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | job summary report
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | --------------------------------------------------
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | PanDA job id: 6962918726
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | task id: 47898826
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | errors: (none)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,832 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | pilot state: finished 
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | transexitcode: 0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | exeerrorcode: 0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | exeerrordiag: 
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | exitcode: 0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | exitmsg: OK
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | cpuconsumptiontime: 60172 s
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | nevents: 400
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | neventsw: 0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | pid: 4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | pgrp: 4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | corecount: 4
[2026-01-11 09:02:30] 2026-01-11 07:58:32,833 | INFO     | event service: False
[2026-01-11 09:02:30] 2026-01-11 07:58:32,834 | INFO     | sizes: {0: 2283753, 1: 2284008, 6: 2284270, 12: 2284298, 15681: 2315482, 15683: 2324502, 15684: 2324686, 15688: 2324880}
[2026-01-11 09:02:30] 2026-01-11 07:58:32,834 | INFO     | --------------------------------------------------
[2026-01-11 09:02:30] 2026-01-11 07:58:32,834 | INFO     | 
[2026-01-11 09:02:30] 2026-01-11 07:58:32,834 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2026-01-11 09:02:30] 2026-01-11 07:58:32,857 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,857 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 09:02:30] 2026-01-11 07:58:32,859 | INFO     | job 6962918726 has completed (purged errors)
[2026-01-11 09:02:30] 2026-01-11 07:58:32,859 | INFO     | overall cleanup function is called
[2026-01-11 09:02:30] 2026-01-11 07:58:33,867 | INFO     | --- collectZombieJob: --- 10, [4164384]
[2026-01-11 09:02:30] 2026-01-11 07:58:33,868 | INFO     | zombie collector waiting for pid 4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:33,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 09:02:30] 2026-01-11 07:58:33,868 | INFO     | collected zombie processes
[2026-01-11 09:02:30] 2026-01-11 07:58:33,868 | INFO     | will attempt to kill all subprocesses of pid=4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:34,149 | INFO     | PID=4157431 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-11 09:02:30] 2026-01-11 07:58:34,150 | INFO     | .. there are 6 such processes running
[2026-01-11 09:02:30] 2026-01-11 07:58:34,471 | INFO     | process IDs to be killed: [4164384] (in reverse order)
[2026-01-11 09:02:30] 2026-01-11 07:58:34,600 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 09:02:30] 2026-01-11 07:58:34,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 09:02:30] 2026-01-11 07:58:34,615 | INFO     | did not find any defunct processes belonging to 4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:34,629 | INFO     | did not find any defunct processes belonging to 4164384
[2026-01-11 09:02:30] 2026-01-11 07:58:34,630 | INFO     | ready for new job
[2026-01-11 09:02:30] 2026-01-11 07:58:34,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 09:02:30] 2026-01-11 07:58:34,633 | INFO     | ***************************************
[2026-01-11 09:02:30] 2026-01-11 07:58:34,633 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 09:02:30] 2026-01-11 07:58:34,633 | INFO     | ***************************************
[2026-01-11 09:02:30] 2026-01-11 07:58:34,633 | INFO     | 
[2026-01-11 09:02:30] 2026-01-11 07:58:34,637 | INFO     | architecture information:
[2026-01-11 09:02:30] 2026-01-11 07:58:34,638 | INFO     | executing command: cat /etc/os-release
[2026-01-11 09:02:30] 2026-01-11 07:58:34,655 | INFO     | cat /etc/os-release:
[2026-01-11 09:02:30] NAME="CentOS Linux"
[2026-01-11 09:02:30] VERSION="7 (Core)"
[2026-01-11 09:02:30] ID="centos"
[2026-01-11 09:02:30] ID_LIKE="rhel fedora"
[2026-01-11 09:02:30] VERSION_ID="7"
[2026-01-11 09:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 09:02:30] ANSI_COLOR="0;31"
[2026-01-11 09:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 09:02:30] HOME_URL="https://www.centos.org/"
[2026-01-11 09:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 09:02:30] 
[2026-01-11 09:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 09:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 09:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 09:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 09:02:30] 
[2026-01-11 09:02:30] 2026-01-11 07:58:34,656 | INFO     | ***************************************
[2026-01-11 09:02:30] 2026-01-11 07:58:35,159 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2026-01-11 09:02:30] 2026-01-11 07:58:35,176 | INFO     | sufficient remaining disk space (690709594112 B)
[2026-01-11 09:02:30] 2026-01-11 07:58:35,176 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 09:02:30] 2026-01-11 07:58:35,176 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 09:02:30] 2026-01-11 07:58:35,177 | INFO     | update_server=False
[2026-01-11 09:02:30] 2026-01-11 07:58:35,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 09:02:30] 2026-01-11 07:58:35,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 09:02:30] 2026-01-11 07:58:35,195 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 09:02:30] 2026-01-11 07:58:35,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 09:02:30] 2026-01-11 07:58:35,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:02:30] 2026-01-11 07:58:35,196 | INFO     | will abort loop
[2026-01-11 09:02:30] 2026-01-11 07:58:35,201 | INFO     | all data control threads have been joined
[2026-01-11 09:02:30] 2026-01-11 07:58:35,683 | INFO     | all job control threads have been joined
[2026-01-11 09:02:30] 2026-01-11 07:58:36,107 | INFO     | all payload control threads have been joined
[2026-01-11 09:02:30] 2026-01-11 07:58:36,182 | INFO     | [job] retrieve thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,201 | INFO     | [job] job monitor thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,206 | INFO     | [data] control thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,215 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 09:02:30] 2026-01-11 07:58:36,449 | INFO     | [payload] validate_post thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,688 | INFO     | [job] control thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,796 | INFO     | [payload] failed_post thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:36,898 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,112 | INFO     | [payload] control thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,234 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,298 | INFO     | [job] validate thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,337 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,530 | INFO     | [data] copytool_in thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:37,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:02:30] 2026-01-11 07:58:38,296 | INFO     | [data] copytool_out thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:38,847 | INFO     | [job] queue monitor thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:58:39,183 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 09:02:30] 2026-01-11 07:59:06,734 | INFO     | PID=4157431 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 09:02:30] 2026-01-11 07:59:06,734 | INFO     | .. there are 6 such processes running
[2026-01-11 09:02:30] 2026-01-11 07:59:06,734 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 09:02:30] 2026-01-11 07:59:06,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 09:02:30] 2026-01-11 07:59:06,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 09:02:30] 2026-01-11 07:59:14,328 | INFO     | [monitor] cgroup control has ended
[2026-01-11 09:02:30] 2026-01-11 07:59:14,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22951396464448)>', '<ExcThread(monitor, started 22950954645248)>']
[2026-01-11 09:02:30] 2026-01-11 07:59:14,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 09:02:30] 2026-01-11 07:59:14,770 | INFO     | [monitor] control thread has ended
[2026-01-11 09:02:30] 2026-01-11 07:59:19,736 | INFO     | all workflow threads have been joined
[2026-01-11 09:02:30] 2026-01-11 07:59:19,736 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 09:02:30] 2026-01-11 07:59:19,736 | INFO     | traces error code: 0
[2026-01-11 09:02:30] 2026-01-11 07:59:19,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 09:02:30] 2026-01-11 07:59:19,919 [wrapper] ==== pilot stdout END ====
[2026-01-11 09:02:30] 2026-01-11 07:59:19,922 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 09:02:30] 2026-01-11 07:59:19,925 [wrapper] pilotpid: 4157431
[2026-01-11 09:02:30] 2026-01-11 07:59:19,928 [wrapper] Pilot exit status: 0
[2026-01-11 09:02:30] 2026-01-11 07:59:19,940 [wrapper] pandaids: 6962918726
[2026-01-11 09:02:30] 2026-01-11 07:59:20,022 [wrapper] cleanup supervisor_pilot  273294 4157432
[2026-01-11 09:02:30] 2026-01-11 07:59:20,026 [wrapper] Test setup, not cleaning
[2026-01-11 09:02:30] 2026-01-11 07:59:20,029 [wrapper] apfmon messages muted
[2026-01-11 09:02:30] 2026-01-11 07:59:20,032 [wrapper] ==== wrapper stdout END ====
[2026-01-11 09:02:30] 2026-01-11 07:59:20,035 [wrapper] ==== wrapper stderr END ====
[2026-01-11 09:02:30]  *** Error codes and diagnostics ***
[2026-01-11 09:02:30]     "exeErrorCode": 0,
[2026-01-11 09:02:30]     "exeErrorDiag": "",
[2026-01-11 09:02:30]     "pilotErrorCode": 0,
[2026-01-11 09:02:30]     "pilotErrorDiag": "",
[2026-01-11 09:02:30]  *** Listing of results directory ***
[2026-01-11 09:02:30] total 444996
[2026-01-11 09:02:30] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:09 pilot3.tar.gz
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:09 queuedata.json
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc       100 Jan 11 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 09:02:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 04:36 run_atlas
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc       105 Jan 11 04:36 job.xml
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc 224558451 Jan 11 04:36 EVNT.47898824._000805.pool.root.1
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc      6637 Jan 11 04:36 init_data.xml
[2026-01-11 09:02:30] drwxrwx--x 2 boinc boinc      4096 Jan 11 04:36 shared
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc    592392 Jan 11 04:36 input.tar.gz
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:36 start_atlas.sh
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc         0 Jan 11 04:36 boinc_lockfile
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc      2519 Jan 11 04:36 pandaJob.out
[2026-01-11 09:02:30] -rw------- 1 boinc boinc    989548 Jan 11 04:36 agis_schedconf.cvmfs.json
[2026-01-11 09:02:30] drwx------ 5 boinc boinc      4096 Jan 11 04:36 pilot3
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc       529 Jan 11 08:57 boinc_task_state.xml
[2026-01-11 09:02:30] -rw------- 1 boinc boinc 221937581 Jan 11 08:57 HITS.47898826._020746.pool.root.1
[2026-01-11 09:02:30] -rw------- 1 boinc boinc        95 Jan 11 08:58 pilot_heartbeat.json
[2026-01-11 09:02:30] -rw------- 1 boinc boinc      1047 Jan 11 08:58 memory_monitor_summary.json
[2026-01-11 09:02:30] -rw------- 1 boinc boinc   1516240 Jan 11 08:58 agis_ddmendpoints.agis.ALL.json
[2026-01-11 09:02:30] -rw------- 1 boinc boinc    436215 Jan 11 08:58 log.47898826._020746.job.log.tgz.1
[2026-01-11 09:02:30] -rw------- 1 boinc boinc      7826 Jan 11 08:58 heartbeat.json
[2026-01-11 09:02:30] -rw------- 1 boinc boinc      5019 Jan 11 08:59 pilotlog.txt
[2026-01-11 09:02:30] -rw------- 1 boinc boinc   2201584 Jan 11 08:59 log.47898826._020746.job.log.1
[2026-01-11 09:02:30] -rw------- 1 boinc boinc       357 Jan 11 08:59 output.list
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc       620 Jan 11 08:59 runtime_log
[2026-01-11 09:02:30] -rw------- 1 boinc boinc   2652160 Jan 11 08:59 result.tar.gz
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc      9206 Jan 11 08:59 runtime_log.err
[2026-01-11 09:02:30] -rw------- 1 boinc boinc       665 Jan 11 08:59 jkoKDmcB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJijKDmNiPKTm.diag
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc        26 Jan 11 09:02 wrapper_checkpoint.txt
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc      8192 Jan 11 09:02 boinc_mmap_file
[2026-01-11 09:02:30] -rw-r--r-- 1 boinc boinc     21200 Jan 11 09:02 stderr.txt
[2026-01-11 09:02:30] HITS file was successfully produced:
[2026-01-11 09:02:30] -rw------- 1 boinc boinc 221937581 Jan 11 08:57 shared/HITS.pool.root.1
[2026-01-11 09:02:30]  *** Contents of shared directory: ***
[2026-01-11 09:02:30] total 439224
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc 224558451 Jan 11 04:36 ATLAS.root_0
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc    592392 Jan 11 04:36 input.tar.gz
[2026-01-11 09:02:30] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:36 start_atlas.sh
[2026-01-11 09:02:30] -rw------- 1 boinc boinc 221937581 Jan 11 08:57 HITS.pool.root.1
[2026-01-11 09:02:30] -rw------- 1 boinc boinc   2652160 Jan 11 08:59 result.tar.gz
09:02:32 (4153666): run_atlas exited; CPU time 60918.598784
09:02:32 (4153666): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN