Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:21:20 (32540): wrapper (7.7.26015): starting
20:21:20 (32540): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 20:21:20] Arguments: --nthreads 8
[2026-01-08 20:21:20] Threads: 8
[2026-01-08 20:21:20] Checking for CVMFS
[2026-01-08 20:21:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:21:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:21:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:21:20] 2.11.2.0 25933 34371 121880 154918 0 109 24807393 25165824 46 130560 0 14519150 99.828 8804707 3256 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 20:21:20] CVMFS is ok
[2026-01-08 20:21:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:21:21] Checking for apptainer binary...
[2026-01-08 20:21:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 20:21:21] Running /usr/bin/apptainer --version
[2026-01-08 20:21:21] apptainer version 1.3.2-1.el7
[2026-01-08 20:21:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:21:22] cg-vwn397.simple-grid.lan
[2026-01-08 20:21:22] apptainer works
[2026-01-08 20:21:22] Set ATHENA_PROC_NUMBER=8
[2026-01-08 20:21:22] Set ATHENA_CORE_NUMBER=8
[2026-01-08 20:21:22] Starting ATLAS job with PandaID=6962918896
[2026-01-08 20:21:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:21:27]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:21:27] 2026-01-09 01:20:44,251 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 02:21:27] 2026-01-09 01:20:44,253 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6962918896/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,253 | INFO     | extracted standard info from prmon json
[2026-01-09 02:21:27] 2026-01-09 01:20:44,254 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 02:21:27] 2026-01-09 01:20:44,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 02:21:27] 2026-01-09 01:20:44,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 02:21:27] 2026-01-09 01:20:44,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 02:21:27] 2026-01-09 01:20:44,265 | INFO     | fitting pss+swap vs Time
[2026-01-09 02:21:27] 2026-01-09 01:20:44,266 | INFO     | sum of square deviations: 13408995600.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,270 | INFO     | sum of deviations: -63999525428.00006
[2026-01-09 02:21:27] 2026-01-09 01:20:44,270 | INFO     | mean x: 1767910812.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,270 | INFO     | mean y: 2519504.3333333335
[2026-01-09 02:21:27] 2026-01-09 01:20:44,270 | INFO     | intersect: 8440545464.087562
[2026-01-09 02:21:27] 2026-01-09 01:20:44,274 | INFO     | chi2: 2.6068747908022933
[2026-01-09 02:21:27] 2026-01-09 01:20:44,275 | INFO     | sum of square deviations: 12844082682.5
[2026-01-09 02:21:27] 2026-01-09 01:20:44,279 | INFO     | sum of deviations: -39619406731.00001
[2026-01-09 02:21:27] 2026-01-09 01:20:44,279 | INFO     | mean x: 1767910659.5
[2026-01-09 02:21:27] 2026-01-09 01:20:44,279 | INFO     | mean y: 2526013.61849711
[2026-01-09 02:21:27] 2026-01-09 01:20:44,279 | INFO     | intersect: 5455898840.1758175
[2026-01-09 02:21:27] 2026-01-09 01:20:44,280 | INFO     | chi2: 1.8427411135341383
[2026-01-09 02:21:27] 2026-01-09 01:20:44,280 | INFO     | current chi2=1.8427411135341383 (change=29.312250820952734 %)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,281 | INFO     | sum of square deviations: 12295263090.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,285 | INFO     | sum of deviations: -38814151586.999985
[2026-01-09 02:21:27] 2026-01-09 01:20:44,285 | INFO     | mean x: 1767910507.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,285 | INFO     | mean y: 2526237.3900293256
[2026-01-09 02:21:27] 2026-01-09 01:20:44,285 | INFO     | intersect: 5583532996.550642
[2026-01-09 02:21:27] 2026-01-09 01:20:44,286 | INFO     | chi2: 1.8418325150047292
[2026-01-09 02:21:27] 2026-01-09 01:20:44,286 | INFO     | current chi2=1.8418325150047292 (change=0.049306900613210976 %)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,286 | INFO     | right removable region: 340
[2026-01-09 02:21:27] 2026-01-09 01:20:44,294 | INFO     | sum of square deviations: 12844082682.5
[2026-01-09 02:21:27] 2026-01-09 01:20:44,298 | INFO     | sum of deviations: -119392666447.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,299 | INFO     | mean x: 1767910964.5
[2026-01-09 02:21:27] 2026-01-09 01:20:44,299 | INFO     | mean y: 2534361.098265896
[2026-01-09 02:21:27] 2026-01-09 01:20:44,299 | INFO     | intersect: 16436218985.390823
[2026-01-09 02:21:27] 2026-01-09 01:20:44,299 | INFO     | chi2: 1.0857625388100072
[2026-01-09 02:21:27] 2026-01-09 01:20:44,300 | INFO     | current chi2=1.0857625388100072 (change=58.350031131497026 %)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,300 | INFO     | sum of square deviations: 12295263090.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,304 | INFO     | sum of deviations: -119795791779.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,304 | INFO     | mean x: 1767911117.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,305 | INFO     | mean y: 2534458.84457478
[2026-01-09 02:21:27] 2026-01-09 01:20:44,305 | INFO     | intersect: 17227730089.52313
[2026-01-09 02:21:27] 2026-01-09 01:20:44,305 | INFO     | chi2: 1.0654729809660382
[2026-01-09 02:21:27] 2026-01-09 01:20:44,305 | INFO     | current chi2=1.0654729809660382 (change=1.868692013099505 %)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,306 | INFO     | left removable region: 20
[2026-01-09 02:21:27] 2026-01-09 01:20:44,306 | INFO     | sum of square deviations: 10160711440.0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,310 | INFO     | sum of deviations: -74500437497.50006
[2026-01-09 02:21:27] 2026-01-09 01:20:44,310 | INFO     | mean x: 1767911086.5
[2026-01-09 02:21:27] 2026-01-09 01:20:44,310 | INFO     | mean y: 2536053.746875
[2026-01-09 02:21:27] 2026-01-09 01:20:44,310 | INFO     | intersect: 12965225741.244848
[2026-01-09 02:21:27] 2026-01-09 01:20:44,311 | INFO     | chi2: 0.2654719362434786
[2026-01-09 02:21:27] 2026-01-09 01:20:44,311 | INFO     | current memory leak: -7.33 B/s (using 320 data points, chi2=0.27)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,319 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,319 | INFO     | ..............................
[2026-01-09 02:21:27] 2026-01-09 01:20:44,319 | INFO     | . Timing measurements:
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . get job = 0 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . initial setup = 1 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . payload setup = 9 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . stage-in = 0 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . payload execution = 21391 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . stage-out = 6 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | . log creation = 2 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,320 | INFO     | ..............................
[2026-01-09 02:21:27] 2026-01-09 01:20:44,966 | INFO     | 
[2026-01-09 02:21:27] 2026-01-09 01:20:44,966 | INFO     | job summary report
[2026-01-09 02:21:27] 2026-01-09 01:20:44,966 | INFO     | --------------------------------------------------
[2026-01-09 02:21:27] 2026-01-09 01:20:44,966 | INFO     | PanDA job id: 6962918896
[2026-01-09 02:21:27] 2026-01-09 01:20:44,966 | INFO     | task id: 47898826
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | errors: (none)
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | pilot state: finished 
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | transexitcode: 0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | exeerrorcode: 0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | exeerrordiag: 
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | exitcode: 0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | exitmsg: OK
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | cpuconsumptiontime: 80191 s
[2026-01-09 02:21:27] 2026-01-09 01:20:44,967 | INFO     | nevents: 400
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | neventsw: 0
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | pid: 10345
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | pgrp: 10345
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | corecount: 8
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | event service: False
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | sizes: {0: 2283798, 1: 2283997, 7: 2284259, 12: 2284287, 21405: 2317465, 21412: 2326463, 21413: 2326647, 21527: 2326841}
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | --------------------------------------------------
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | 
[2026-01-09 02:21:27] 2026-01-09 01:20:44,968 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-09 02:21:27] 2026-01-09 01:20:45,502 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,502 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,502 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,502 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,502 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,503 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:21:27] 2026-01-09 01:20:45,504 | INFO     | job 6962918896 has completed (purged errors)
[2026-01-09 02:21:27] 2026-01-09 01:20:45,505 | INFO     | overall cleanup function is called
[2026-01-09 02:21:27] 2026-01-09 01:20:46,514 | INFO     | --- collectZombieJob: --- 10, [10345]
[2026-01-09 02:21:27] 2026-01-09 01:20:46,514 | INFO     | zombie collector waiting for pid 10345
[2026-01-09 02:21:27] 2026-01-09 01:20:46,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:21:27] 2026-01-09 01:20:46,514 | INFO     | collected zombie processes
[2026-01-09 02:21:27] 2026-01-09 01:20:46,514 | INFO     | will attempt to kill all subprocesses of pid=10345
[2026-01-09 02:21:27] 2026-01-09 01:20:46,627 | INFO     | process IDs to be killed: [10345] (in reverse order)
[2026-01-09 02:21:27] 2026-01-09 01:20:47,553 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:21:27] 2026-01-09 01:20:47,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:21:27] 2026-01-09 01:20:47,555 | INFO     | did not find any defunct processes belonging to 10345
[2026-01-09 02:21:27] 2026-01-09 01:20:47,557 | INFO     | did not find any defunct processes belonging to 10345
[2026-01-09 02:21:27] 2026-01-09 01:20:47,557 | INFO     | ready for new job
[2026-01-09 02:21:27] 2026-01-09 01:20:47,557 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:21:27] 2026-01-09 01:20:47,560 | INFO     | ***************************************
[2026-01-09 02:21:27] 2026-01-09 01:20:47,560 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:21:27] 2026-01-09 01:20:47,560 | INFO     | ***************************************
[2026-01-09 02:21:27] 2026-01-09 01:20:47,560 | INFO     | 
[2026-01-09 02:21:27] 2026-01-09 01:20:47,561 | INFO     | pilot is running in a VM
[2026-01-09 02:21:27] 2026-01-09 01:20:47,561 | INFO     | architecture information:
[2026-01-09 02:21:27] 2026-01-09 01:20:47,562 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:21:27] 2026-01-09 01:20:47,825 | INFO     | cat /etc/os-release:
[2026-01-09 02:21:27] NAME="CentOS Linux"
[2026-01-09 02:21:27] VERSION="7 (Core)"
[2026-01-09 02:21:27] ID="centos"
[2026-01-09 02:21:27] ID_LIKE="rhel fedora"
[2026-01-09 02:21:27] VERSION_ID="7"
[2026-01-09 02:21:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:21:27] ANSI_COLOR="0;31"
[2026-01-09 02:21:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:21:27] HOME_URL="https://www.centos.org/"
[2026-01-09 02:21:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:21:27] 
[2026-01-09 02:21:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:21:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:21:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:21:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:21:27] 
[2026-01-09 02:21:27] 2026-01-09 01:20:47,826 | INFO     | ***************************************
[2026-01-09 02:21:27] 2026-01-09 01:20:48,329 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-09 02:21:27] 2026-01-09 01:20:48,574 | INFO     | sufficient remaining disk space (495565406208 B)
[2026-01-09 02:21:27] 2026-01-09 01:20:48,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:21:27] 2026-01-09 01:20:48,574 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:21:27] 2026-01-09 01:20:48,574 | INFO     | update_server=False
[2026-01-09 02:21:27] 2026-01-09 01:20:48,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:21:27] 2026-01-09 01:20:48,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:21:27] 2026-01-09 01:20:48,702 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 02:21:27] 2026-01-09 01:20:48,702 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 02:21:27] 2026-01-09 01:20:48,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:21:27] 2026-01-09 01:20:48,702 | INFO     | will abort loop
[2026-01-09 02:21:27] 2026-01-09 01:20:48,791 | INFO     | all job control threads have been joined
[2026-01-09 02:21:27] 2026-01-09 01:20:49,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:21:27] 2026-01-09 01:20:49,401 | INFO     | all payload control threads have been joined
[2026-01-09 02:21:27] 2026-01-09 01:20:49,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:21:27] 2026-01-09 01:20:49,524 | INFO     | all data control threads have been joined
[2026-01-09 02:21:27] 2026-01-09 01:20:49,581 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,708 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,777 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,797 | INFO     | [job] control thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,890 | INFO     | [job] validate thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:49,958 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,206 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,407 | INFO     | [payload] control thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,502 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,509 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,530 | INFO     | [data] control thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,582 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:50,619 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:51,146 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:20:53,261 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:21:27] 2026-01-09 01:21:16,744 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:21:27] 2026-01-09 01:21:17,325 | INFO     | PID=3891 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 02:21:27] 2026-01-09 01:21:17,325 | INFO     | .. there are 2 such processes running
[2026-01-09 02:21:27] 2026-01-09 01:21:17,325 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:21:27] 2026-01-09 01:21:17,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:21:27] 2026-01-09 01:21:17,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:21:27] 2026-01-09 01:21:17,765 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299026990912)>', '<ExcThread(monitor, started 140298462164736)>']
[2026-01-09 02:21:27] 2026-01-09 01:21:18,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:21:27] 2026-01-09 01:21:18,331 | INFO     | [monitor] control thread has ended
[2026-01-09 02:21:27] 2026-01-09 01:21:22,791 | INFO     | all workflow threads have been joined
[2026-01-09 02:21:27] 2026-01-09 01:21:22,791 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:21:27] 2026-01-09 01:21:22,791 | INFO     | traces error code: 0
[2026-01-09 02:21:27] 2026-01-09 01:21:22,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:21:27] 2026-01-09 01:21:23,113 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:21:27] 2026-01-09 01:21:23,223 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:21:27] 2026-01-09 01:21:23,319 [wrapper] pilotpid: 3891
[2026-01-09 02:21:27] 2026-01-09 01:21:23,424 [wrapper] Pilot exit status: 0
[2026-01-09 02:21:27] 2026-01-09 01:21:23,927 [wrapper] pandaids: 6962918896
[2026-01-09 02:21:27] 2026-01-09 01:21:24,749 [wrapper] cleanup supervisor_pilot 18345 3892
[2026-01-09 02:21:27] 2026-01-09 01:21:24,842 [wrapper] Test setup, not cleaning
[2026-01-09 02:21:27] 2026-01-09 01:21:24,903 [wrapper] apfmon messages muted
[2026-01-09 02:21:27] 2026-01-09 01:21:25,016 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:21:27] 2026-01-09 01:21:25,115 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:21:27]  *** Error codes and diagnostics ***
[2026-01-09 02:21:27]     "exeErrorCode": 0,
[2026-01-09 02:21:27]     "exeErrorDiag": "",
[2026-01-09 02:21:27]     "pilotErrorCode": 0,
[2026-01-09 02:21:27]     "pilotErrorDiag": "",
[2026-01-09 02:21:27]  *** Listing of results directory ***
[2026-01-09 02:21:27] total 441060
[2026-01-09 02:21:27] -rwx------. 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:09 pilot3.tar.gz
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:09 queuedata.json
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc       100 Jan  8 20:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:21:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 20:21 run_atlas
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc       105 Jan  8 20:21 job.xml
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 20:21 EVNT.47898824._000834.pool.root.1
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc     15847 Jan  8 20:21 start_atlas.sh
[2026-01-09 02:21:27] drwxrwx--x. 2 boinc boinc        68 Jan  8 20:21 shared
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc    592397 Jan  8 20:21 input.tar.gz
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc      6390 Jan  8 20:21 init_data.xml
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc         0 Jan  8 20:21 boinc_lockfile
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc      2519 Jan  8 20:21 pandaJob.out
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc    989845 Jan  8 20:21 agis_schedconf.cvmfs.json
[2026-01-09 02:21:27] drwx------. 5 boinc boinc      4096 Jan  8 20:21 pilot3
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc 214081618 Jan  9 02:17 HITS.47898826._020916.pool.root.1
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc       531 Jan  9 02:17 boinc_task_state.xml
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc      1018 Jan  9 02:18 memory_monitor_summary.json
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc   1516240 Jan  9 02:18 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc    554778 Jan  9 02:18 log.47898826._020916.job.log.tgz.1
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc        95 Jan  9 02:20 pilot_heartbeat.json
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc      7775 Jan  9 02:20 heartbeat.json
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc      8192 Jan  9 02:21 boinc_mmap_file
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc        28 Jan  9 02:21 wrapper_checkpoint.txt
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc      5069 Jan  9 02:21 pilotlog.txt
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc   2885081 Jan  9 02:21 log.47898826._020916.job.log.1
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc       357 Jan  9 02:21 output.list
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc       620 Jan  9 02:21 runtime_log
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc   3461120 Jan  9 02:21 result.tar.gz
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc      8817 Jan  9 02:21 runtime_log.err
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc       656 Jan  9 02:21 3eWMDmnB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXijKDm71LUMn.diag
[2026-01-09 02:21:27] -rw-r--r--. 1 boinc boinc     20688 Jan  9 02:21 stderr.txt
[2026-01-09 02:21:27] HITS file was successfully produced:
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc 214081618 Jan  9 02:17 shared/HITS.pool.root.1
[2026-01-09 02:21:27]  *** Contents of shared directory: ***
[2026-01-09 02:21:27] total 434512
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 20:21 ATLAS.root_0
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc     15847 Jan  8 20:21 start_atlas.sh
[2026-01-09 02:21:27] -rw-r--r--. 2 boinc boinc    592397 Jan  8 20:21 input.tar.gz
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc 214081618 Jan  9 02:17 HITS.pool.root.1
[2026-01-09 02:21:27] -rw-------. 1 boinc boinc   3461120 Jan  9 02:21 result.tar.gz
02:21:29 (32540): run_atlas exited; CPU time 80399.594159
02:21:29 (32540): called boinc_finish(0)

</stderr_txt>
]]>

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