Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:04:33 (97594): wrapper (7.7.26015): starting
13:04:33 (97594): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 13:04:33] Arguments: --nthreads 4
[2026-01-08 13:04:33] Threads: 4
[2026-01-08 13:04:33] Checking for CVMFS
[2026-01-08 13:04:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:04:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:04:34] 2.9.2.0 3053 212 66192 154906 3 57 29953102 36864001 0 130560 0 255258 99.990 12427 38473 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 13:04:34] CVMFS is ok
[2026-01-08 13:04:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 13:04:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 13:04:34] Further information can be found at the LHC@home message board.
[2026-01-08 13:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:04:34] Checking for apptainer binary...
[2026-01-08 13:04:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:04:34] Running /usr/bin/apptainer --version
[2026-01-08 13:04:34] apptainer version 1.4.1-1.1
[2026-01-08 13:04:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:04:34] thA373a
[2026-01-08 13:04:34] apptainer works
[2026-01-08 13:04:34] Set ATHENA_PROC_NUMBER=4
[2026-01-08 13:04:34] Set ATHENA_CORE_NUMBER=4
[2026-01-08 13:04:34] Starting ATLAS job with PandaID=6962917488
[2026-01-08 13:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 14:41:04]  *** The last 200 lines of the pilot log: ***
[2026-01-08 14:41:04] 2026-01-08 13:40:32,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 14:41:04] 2026-01-08 13:40:32,361 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 14:41:04] 2026-01-08 13:40:32,361 | INFO     | job 6962917488 has completed (purged errors)
[2026-01-08 14:41:04] 2026-01-08 13:40:32,362 | INFO     | overall cleanup function is called
[2026-01-08 14:41:04] 2026-01-08 13:40:33,368 | INFO     | --- collectZombieJob: --- 10, [107987]
[2026-01-08 14:41:04] 2026-01-08 13:40:33,369 | INFO     | zombie collector waiting for pid 107987
[2026-01-08 14:41:04] 2026-01-08 13:40:33,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 14:41:04] 2026-01-08 13:40:33,369 | INFO     | collected zombie processes
[2026-01-08 14:41:04] 2026-01-08 13:40:33,369 | INFO     | will attempt to kill all subprocesses of pid=107987
[2026-01-08 14:41:04] 2026-01-08 13:40:33,414 | INFO     | process IDs to be killed: [107987] (in reverse order)
[2026-01-08 14:41:04] 2026-01-08 13:40:33,447 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 14:41:04] 2026-01-08 13:40:33,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 14:41:04] 2026-01-08 13:40:33,449 | INFO     | did not find any defunct processes belonging to 107987
[2026-01-08 14:41:04] 2026-01-08 13:40:33,450 | INFO     | did not find any defunct processes belonging to 107987
[2026-01-08 14:41:04] 2026-01-08 13:40:33,450 | INFO     | ready for new job
[2026-01-08 14:41:04] 2026-01-08 13:40:33,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 14:41:04] 2026-01-08 13:40:33,451 | INFO     | ***************************************
[2026-01-08 14:41:04] 2026-01-08 13:40:33,451 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 14:41:04] 2026-01-08 13:40:33,451 | INFO     | ***************************************
[2026-01-08 14:41:04] 2026-01-08 13:40:33,451 | INFO     | 
[2026-01-08 14:41:04] 2026-01-08 13:40:33,451 | INFO     | architecture information:
[2026-01-08 14:41:04] 2026-01-08 13:40:33,452 | INFO     | executing command: cat /etc/os-release
[2026-01-08 14:41:04] 2026-01-08 13:40:33,465 | INFO     | cat /etc/os-release:
[2026-01-08 14:41:04] NAME="CentOS Linux"
[2026-01-08 14:41:04] VERSION="7 (Core)"
[2026-01-08 14:41:04] ID="centos"
[2026-01-08 14:41:04] ID_LIKE="rhel fedora"
[2026-01-08 14:41:04] VERSION_ID="7"
[2026-01-08 14:41:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 14:41:04] ANSI_COLOR="0;31"
[2026-01-08 14:41:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 14:41:04] HOME_URL="https://www.centos.org/"
[2026-01-08 14:41:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 14:41:04] 
[2026-01-08 14:41:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 14:41:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 14:41:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 14:41:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 14:41:04] 
[2026-01-08 14:41:04] 2026-01-08 13:40:33,466 | INFO     | ***************************************
[2026-01-08 14:41:04] 2026-01-08 13:40:33,969 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 14:41:04] 2026-01-08 13:40:33,987 | INFO     | sufficient remaining disk space (330892836864 B)
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | INFO     | update_server=False
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:41:04] 2026-01-08 13:40:33,988 | INFO     | aborting loop
[2026-01-08 14:41:04] 2026-01-08 13:40:33,996 | INFO     | all data control threads have been joined
[2026-01-08 14:41:04] 2026-01-08 13:40:34,993 | INFO     | [job] retrieve thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:34,994 | INFO     | [job] queue monitor thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:34,994 | INFO     | [job] job monitor thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,001 | INFO     | [data] control thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,209 | INFO     | [payload] failed_post thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,326 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,412 | INFO     | all payload control threads have been joined
[2026-01-08 14:41:04] 2026-01-08 13:40:35,512 | INFO     | all job control threads have been joined
[2026-01-08 14:41:04] 2026-01-08 13:40:35,734 | INFO     | [job] validate thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,845 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,975 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:35,994 | INFO     | [data] copytool_out thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:36,065 | INFO     | [payload] validate_post thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:36,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 14:41:04] 2026-01-08 13:40:36,418 | INFO     | [payload] control thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:36,421 | INFO     | [data] copytool_in thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:36,518 | INFO     | [job] control thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:40,276 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:44,522 | INFO     | job.realtimelogging is not enabled
[2026-01-08 14:41:04] 2026-01-08 13:40:45,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 14:41:04] 2026-01-08 13:40:49,469 | INFO     | [monitor] cgroup control has ended
[2026-01-08 14:41:04] 2026-01-08 13:40:50,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838889494336)>', '<ExcThread(monitor, started 139837944354560)>']
[2026-01-08 14:41:04] 2026-01-08 13:40:55,962 | INFO     | all workflow threads have been joined
[2026-01-08 14:41:04] 2026-01-08 13:40:55,963 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 14:41:04] 2026-01-08 13:40:55,963 | INFO     | traces error code: 0
[2026-01-08 14:41:04] 2026-01-08 13:40:55,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | INFO     | PID=101401 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 14:41:04] 2026-01-08 13:41:04,298 | INFO     | [monitor] control thread has ended
[2026-01-08 14:41:04] 2026-01-08 13:41:04,374 [wrapper] ==== pilot stdout END ====
[2026-01-08 14:41:04] 2026-01-08 13:41:04,378 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 14:41:04] 2026-01-08 13:41:04,382 [wrapper] pilotpid: 101401
[2026-01-08 14:41:04] 2026-01-08 13:41:04,386 [wrapper] Pilot exit status: 0
[2026-01-08 14:41:04] 2026-01-08 13:41:04,399 [wrapper] pandaids: 6962917488
[2026-01-08 14:41:04] 2026-01-08 13:41:04,421 [wrapper] cleanup supervisor_pilot  120191 101402
[2026-01-08 14:41:04] 2026-01-08 13:41:04,424 [wrapper] Test setup, not cleaning
[2026-01-08 14:41:04] 2026-01-08 13:41:04,428 [wrapper] apfmon messages muted
[2026-01-08 14:41:04] 2026-01-08 13:41:04,432 [wrapper] ==== wrapper stdout END ====
[2026-01-08 14:41:04] 2026-01-08 13:41:04,435 [wrapper] ==== wrapper stderr END ====
[2026-01-08 14:41:04]  *** Error codes and diagnostics ***
[2026-01-08 14:41:04]     "exeErrorCode": 0,
[2026-01-08 14:41:04]     "exeErrorDiag": "",
[2026-01-08 14:41:04]     "pilotErrorCode": 0,
[2026-01-08 14:41:04]     "pilotErrorDiag": "",
[2026-01-08 14:41:04]  *** Listing of results directory ***
[2026-01-08 14:41:04] total 435448
[2026-01-08 14:41:04] -rwx------ 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:10 pilot3.tar.gz
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:10 queuedata.json
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc       100 Jan  8 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 14:41:04] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 13:04 run_atlas
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc       105 Jan  8 13:04 job.xml
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc 223666939 Jan  8 13:04 EVNT.47898824._000648.pool.root.1
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc    592404 Jan  8 13:04 input.tar.gz
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc     15847 Jan  8 13:04 start_atlas.sh
[2026-01-08 14:41:04] drwxrwx--x 2 boinc boinc      4096 Jan  8 13:04 shared
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc         0 Jan  8 13:04 boinc_setup_complete
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc      6377 Jan  8 13:04 init_data.xml
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc         0 Jan  8 13:04 boinc_lockfile
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc      2519 Jan  8 13:04 pandaJob.out
[2026-01-08 14:41:04] -rw------- 1 boinc boinc    989835 Jan  8 13:04 agis_schedconf.cvmfs.json
[2026-01-08 14:41:04] -rw------- 1 boinc boinc   1516240 Jan  8 13:04 agis_ddmendpoints.agis.ALL.json
[2026-01-08 14:41:04] drwx------ 5 boinc boinc      4096 Jan  8 13:04 pilot3
[2026-01-08 14:41:04] -rw------- 1 boinc boinc 216072531 Jan  8 14:40 HITS.47898826._019649.pool.root.1
[2026-01-08 14:41:04] -rw------- 1 boinc boinc        95 Jan  8 14:40 pilot_heartbeat.json
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc       530 Jan  8 14:40 boinc_task_state.xml
[2026-01-08 14:41:04] -rw------- 1 boinc boinc      1019 Jan  8 14:40 memory_monitor_summary.json
[2026-01-08 14:41:04] -rw------- 1 boinc boinc    295547 Jan  8 14:40 log.47898826._019649.job.log.tgz.1
[2026-01-08 14:41:04] -rw------- 1 boinc boinc      7764 Jan  8 14:40 heartbeat.json
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc      8192 Jan  8 14:40 boinc_mmap_file
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc        27 Jan  8 14:41 wrapper_checkpoint.txt
[2026-01-08 14:41:04] -rw------- 1 boinc boinc       746 Jan  8 14:41 pilotlog.txt
[2026-01-08 14:41:04] -rw------- 1 boinc boinc    835260 Jan  8 14:41 log.47898826._019649.job.log.1
[2026-01-08 14:41:04] -rw------- 1 boinc boinc       357 Jan  8 14:41 output.list
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc       620 Jan  8 14:41 runtime_log
[2026-01-08 14:41:04] -rw------- 1 boinc boinc   1146880 Jan  8 14:41 result.tar.gz
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc      8902 Jan  8 14:41 runtime_log.err
[2026-01-08 14:41:04] -rw------- 1 boinc boinc       660 Jan  8 14:41 FHQODmBD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYdeKDmgGfKcn.diag
[2026-01-08 14:41:04] -rw-r--r-- 1 boinc boinc     11094 Jan  8 14:41 stderr.txt
[2026-01-08 14:41:04] HITS file was successfully produced:
[2026-01-08 14:41:04] -rw------- 1 boinc boinc 216072531 Jan  8 14:40 shared/HITS.pool.root.1
[2026-01-08 14:41:04]  *** Contents of shared directory: ***
[2026-01-08 14:41:04] total 431164
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc 223666939 Jan  8 13:04 ATLAS.root_0
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc    592404 Jan  8 13:04 input.tar.gz
[2026-01-08 14:41:04] -rw-r--r-- 2 boinc boinc     15847 Jan  8 13:04 start_atlas.sh
[2026-01-08 14:41:04] -rw------- 1 boinc boinc 216072531 Jan  8 14:40 HITS.pool.root.1
[2026-01-08 14:41:04] -rw------- 1 boinc boinc   1146880 Jan  8 14:41 result.tar.gz
14:41:06 (97594): run_atlas exited; CPU time 21768.953097
14:41:06 (97594): called boinc_finish(0)

</stderr_txt>
]]>

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