Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:24:03 (11228): wrapper (7.7.26015): starting
17:24:03 (11228): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 17:24:03] Arguments: --nthreads 8
[2026-01-08 17:24:03] Threads: 8
[2026-01-08 17:24:03] Checking for CVMFS
[2026-01-08 17:24:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:24:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:24:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:24:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:24:05] 2.11.2.0 24663 34213 94216 154914 1 60 16864609 25165825 96 130560 0 15581532 99.808 11164235 2810 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 17:24:05] CVMFS is ok
[2026-01-08 17:24:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:24:05] Checking for apptainer binary...
[2026-01-08 17:24:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:24:05] Running /usr/bin/apptainer --version
[2026-01-08 17:24:06] apptainer version 1.3.2-1.el7
[2026-01-08 17:24:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:24:22] cg-vwn475.simple-grid.lan
[2026-01-08 17:24:22] apptainer works
[2026-01-08 17:24:22] Set ATHENA_PROC_NUMBER=8
[2026-01-08 17:24:22] Set ATHENA_CORE_NUMBER=8
[2026-01-08 17:24:22] Starting ATLAS job with PandaID=6962917384
[2026-01-08 17:24:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:58:24]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:58:24] 2026-01-08 20:57:35,461 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 21:58:24] 2026-01-08 20:57:35,462 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-08 21:58:24] 2026-01-08 20:57:35,464 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6962917384/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,465 | INFO     | extracted standard info from prmon json
[2026-01-08 21:58:24] 2026-01-08 20:57:35,465 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 21:58:24] 2026-01-08 20:57:35,465 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 21:58:24] 2026-01-08 20:57:35,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:58:24] 2026-01-08 20:57:35,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:58:24] 2026-01-08 20:57:35,474 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:58:24] 2026-01-08 20:57:35,475 | INFO     | sum of square deviations: 5081276667.5
[2026-01-08 21:58:24] 2026-01-08 20:57:35,477 | INFO     | sum of deviations: 107092781204.00005
[2026-01-08 21:58:24] 2026-01-08 20:57:35,478 | INFO     | mean x: 1767897978.5
[2026-01-08 21:58:24] 2026-01-08 20:57:35,478 | INFO     | mean y: 2440822.3858267716
[2026-01-08 21:58:24] 2026-01-08 20:57:35,478 | INFO     | intersect: -37257705355.72906
[2026-01-08 21:58:24] 2026-01-08 20:57:35,479 | INFO     | chi2: 7.912495060924341
[2026-01-08 21:58:24] 2026-01-08 20:57:35,479 | INFO     | sum of square deviations: 4787066500.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,482 | INFO     | sum of deviations: 121639359521.00006
[2026-01-08 21:58:24] 2026-01-08 20:57:35,483 | INFO     | mean x: 1767897826.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,483 | INFO     | mean y: 2448222.9036144577
[2026-01-08 21:58:24] 2026-01-08 20:57:35,483 | INFO     | intersect: -44919835445.64546
[2026-01-08 21:58:24] 2026-01-08 20:57:35,483 | INFO     | chi2: 7.211828818710919
[2026-01-08 21:58:24] 2026-01-08 20:57:35,484 | INFO     | current chi2=7.211828818710919 (change=8.855187103669039 %)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,484 | INFO     | right removable region: 248
[2026-01-08 21:58:24] 2026-01-08 20:57:35,484 | INFO     | sum of square deviations: 4787066500.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,487 | INFO     | sum of deviations: 18250997175.000004
[2026-01-08 21:58:24] 2026-01-08 20:57:35,487 | INFO     | mean x: 1767898131.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,487 | INFO     | mean y: 2486845.204819277
[2026-01-08 21:58:24] 2026-01-08 20:57:35,487 | INFO     | intersect: -6737737840.324154
[2026-01-08 21:58:24] 2026-01-08 20:57:35,488 | INFO     | chi2: 2.9307524184252243
[2026-01-08 21:58:24] 2026-01-08 20:57:35,488 | INFO     | current chi2=2.9307524184252243 (change=62.96045184408807 %)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,488 | INFO     | sum of square deviations: 4504437945.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,493 | INFO     | sum of deviations: -36213573540.000015
[2026-01-08 21:58:24] 2026-01-08 20:57:35,494 | INFO     | mean x: 1767898283.5
[2026-01-08 21:58:24] 2026-01-08 20:57:35,494 | INFO     | mean y: 2516116.8524590163
[2026-01-08 21:58:24] 2026-01-08 20:57:35,494 | INFO     | intersect: 14215591151.4042
[2026-01-08 21:58:24] 2026-01-08 20:57:35,495 | INFO     | chi2: 0.9586317822978245
[2026-01-08 21:58:24] 2026-01-08 20:57:35,495 | INFO     | current chi2=0.9586317822978245 (change=67.2905914443321 %)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,495 | INFO     | sum of square deviations: 4233158440.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,497 | INFO     | sum of deviations: -41369728104.000015
[2026-01-08 21:58:24] 2026-01-08 20:57:35,498 | INFO     | mean x: 1767898436.0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,498 | INFO     | mean y: 2518999.046025105
[2026-01-08 21:58:24] 2026-01-08 20:57:35,498 | INFO     | intersect: 17279802296.95322
[2026-01-08 21:58:24] 2026-01-08 20:57:35,498 | INFO     | chi2: 0.9245028061204186
[2026-01-08 21:58:24] 2026-01-08 20:57:35,498 | INFO     | current chi2=0.9245028061204186 (change=3.56017574293222 %)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,499 | INFO     | left removable region: 30
[2026-01-08 21:58:24] 2026-01-08 20:57:35,499 | INFO     | sum of square deviations: 3212467674.5
[2026-01-08 21:58:24] 2026-01-08 20:57:35,501 | INFO     | sum of deviations: -2387089331.9999995
[2026-01-08 21:58:24] 2026-01-08 20:57:35,501 | INFO     | mean x: 1767898710.5
[2026-01-08 21:58:24] 2026-01-08 20:57:35,501 | INFO     | mean y: 2514129.2018348626
[2026-01-08 21:58:24] 2026-01-08 20:57:35,501 | INFO     | intersect: 1316187161.7399573
[2026-01-08 21:58:24] 2026-01-08 20:57:35,502 | INFO     | chi2: 0.0543169714270193
[2026-01-08 21:58:24] 2026-01-08 20:57:35,502 | INFO     | current memory leak: -0.74 B/s (using 218 data points, chi2=0.05)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | ..............................
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . Timing measurements:
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . get job = 0 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . initial setup = 11 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . payload setup = 152 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . stage-in = 0 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,503 | INFO     | . payload execution = 15651 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,504 | INFO     | . stage-out = 3 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,504 | INFO     | . log creation = 1 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,504 | INFO     | ..............................
[2026-01-08 21:58:24] 2026-01-08 20:57:35,789 | INFO     | 
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | job summary report
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | --------------------------------------------------
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | PanDA job id: 6962917384
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | task id: 47898826
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | errors: (none)
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | pilot state: finished 
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | transexitcode: 0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,790 | INFO     | exeerrorcode: 0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | exeerrordiag: 
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | exitcode: 0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | exitmsg: OK
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | cpuconsumptiontime: 74208 s
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | nevents: 400
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | neventsw: 0
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | pid: 21401
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | pgrp: 21401
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | corecount: 8
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | event service: False
[2026-01-08 21:58:24] 2026-01-08 20:57:35,791 | INFO     | sizes: {0: 2283141, 1: 2283827, 2: 2284026, 13: 2284026, 23: 2284082, 34: 2284110, 45: 2284266, 55: 2284294, 66: 2284322, 77: 2284350, 88: 2284406, 98: 2284714, 10
[2026-01-08 21:58:24] 2026-01-08 20:57:35,792 | INFO     | --------------------------------------------------
[2026-01-08 21:58:24] 2026-01-08 20:57:35,792 | INFO     | 
[2026-01-08 21:58:24] 2026-01-08 20:57:35,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-01-08 21:58:24] 2026-01-08 20:57:35,830 | INFO     | time since job start (16129s) is within the limit (174528.0s)
[2026-01-08 21:58:24] 2026-01-08 20:57:36,338 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,338 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,338 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,338 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,339 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | job 6962917384 has completed (purged errors)
[2026-01-08 21:58:24] 2026-01-08 20:57:36,340 | INFO     | overall cleanup function is called
[2026-01-08 21:58:24] 2026-01-08 20:57:37,351 | INFO     | --- collectZombieJob: --- 10, [21401]
[2026-01-08 21:58:24] 2026-01-08 20:57:37,352 | INFO     | zombie collector waiting for pid 21401
[2026-01-08 21:58:24] 2026-01-08 20:57:37,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:58:24] 2026-01-08 20:57:37,352 | INFO     | collected zombie processes
[2026-01-08 21:58:24] 2026-01-08 20:57:37,352 | INFO     | will attempt to kill all subprocesses of pid=21401
[2026-01-08 21:58:24] 2026-01-08 20:57:37,442 | INFO     | process IDs to be killed: [21401] (in reverse order)
[2026-01-08 21:58:24] 2026-01-08 20:57:38,108 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:58:24] 2026-01-08 20:57:38,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:58:24] 2026-01-08 20:57:38,110 | INFO     | did not find any defunct processes belonging to 21401
[2026-01-08 21:58:24] 2026-01-08 20:57:38,112 | INFO     | did not find any defunct processes belonging to 21401
[2026-01-08 21:58:24] 2026-01-08 20:57:38,112 | INFO     | ready for new job
[2026-01-08 21:58:24] 2026-01-08 20:57:38,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:58:24] 2026-01-08 20:57:38,114 | INFO     | ***************************************
[2026-01-08 21:58:24] 2026-01-08 20:57:38,114 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:58:24] 2026-01-08 20:57:38,114 | INFO     | ***************************************
[2026-01-08 21:58:24] 2026-01-08 20:57:38,115 | INFO     | 
[2026-01-08 21:58:24] 2026-01-08 20:57:38,115 | INFO     | pilot is running in a VM
[2026-01-08 21:58:24] 2026-01-08 20:57:38,115 | INFO     | architecture information:
[2026-01-08 21:58:24] 2026-01-08 20:57:38,116 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:58:24] 2026-01-08 20:57:38,419 | INFO     | cat /etc/os-release:
[2026-01-08 21:58:24] NAME="CentOS Linux"
[2026-01-08 21:58:24] VERSION="7 (Core)"
[2026-01-08 21:58:24] ID="centos"
[2026-01-08 21:58:24] ID_LIKE="rhel fedora"
[2026-01-08 21:58:24] VERSION_ID="7"
[2026-01-08 21:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:58:24] ANSI_COLOR="0;31"
[2026-01-08 21:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:58:24] HOME_URL="https://www.centos.org/"
[2026-01-08 21:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:58:24] 
[2026-01-08 21:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:58:24] 
[2026-01-08 21:58:24] 2026-01-08 20:57:38,419 | INFO     | ***************************************
[2026-01-08 21:58:24] 2026-01-08 20:57:38,923 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-01-08 21:58:24] 2026-01-08 20:57:39,157 | INFO     | sufficient remaining disk space (497692966912 B)
[2026-01-08 21:58:24] 2026-01-08 20:57:39,157 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:58:24] 2026-01-08 20:57:39,157 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:58:24] 2026-01-08 20:57:39,157 | INFO     | update_server=False
[2026-01-08 21:58:24] 2026-01-08 20:57:39,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:58:24] 2026-01-08 20:57:39,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:58:24] 2026-01-08 20:57:39,158 | INFO     | aborting loop
[2026-01-08 21:58:24] 2026-01-08 20:57:39,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:58:24] 2026-01-08 20:57:39,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:58:24] 2026-01-08 20:57:40,054 | INFO     | all data control threads have been joined
[2026-01-08 21:58:24] 2026-01-08 20:57:40,069 | INFO     | all payload control threads have been joined
[2026-01-08 21:58:24] 2026-01-08 20:57:40,164 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,164 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,170 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,191 | INFO     | all job control threads have been joined
[2026-01-08 21:58:24] 2026-01-08 20:57:40,277 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,331 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,561 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:40,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:58:24] 2026-01-08 20:57:40,860 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,059 | INFO     | [data] control thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,075 | INFO     | [payload] control thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,197 | INFO     | [job] control thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,423 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,455 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,635 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,652 | INFO     | [job] validate thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:41,659 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:57:43,971 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:58:24] 2026-01-08 20:58:08,985 | INFO     | PID=14948 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 21:58:24] 2026-01-08 20:58:08,986 | INFO     | .. there are 2 such processes running
[2026-01-08 21:58:24] 2026-01-08 20:58:08,986 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:58:24] 2026-01-08 20:58:08,986 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:58:24] 2026-01-08 20:58:08,986 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:58:24] 2026-01-08 20:58:13,516 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:58:24] 2026-01-08 20:58:14,106 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697194739520)>', '<ExcThread(monitor, started 139696462083840)>']
[2026-01-08 21:58:24] 2026-01-08 20:58:15,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:58:24] 2026-01-08 20:58:15,022 | INFO     | [monitor] control thread has ended
[2026-01-08 21:58:24] 2026-01-08 20:58:19,132 | INFO     | all workflow threads have been joined
[2026-01-08 21:58:24] 2026-01-08 20:58:19,133 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:58:24] 2026-01-08 20:58:19,133 | INFO     | traces error code: 0
[2026-01-08 21:58:24] 2026-01-08 20:58:19,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:58:24] 2026-01-08 20:58:19,488 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:58:24] 2026-01-08 20:58:19,588 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:58:24] 2026-01-08 20:58:19,688 [wrapper] pilotpid: 14948
[2026-01-08 21:58:24] 2026-01-08 20:58:19,800 [wrapper] Pilot exit status: 0
[2026-01-08 21:58:24] 2026-01-08 20:58:20,339 [wrapper] pandaids: 6962917384
[2026-01-08 21:58:24] 2026-01-08 20:58:21,308 [wrapper] cleanup supervisor_pilot   339 14949
[2026-01-08 21:58:24] 2026-01-08 20:58:21,416 [wrapper] Test setup, not cleaning
[2026-01-08 21:58:24] 2026-01-08 20:58:21,522 [wrapper] apfmon messages muted
[2026-01-08 21:58:24] 2026-01-08 20:58:21,620 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:58:24] 2026-01-08 20:58:21,712 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:58:24]  *** Error codes and diagnostics ***
[2026-01-08 21:58:24]     "exeErrorCode": 0,
[2026-01-08 21:58:24]     "exeErrorDiag": "",
[2026-01-08 21:58:24]     "pilotErrorCode": 0,
[2026-01-08 21:58:24]     "pilotErrorDiag": "",
[2026-01-08 21:58:24]  *** Listing of results directory ***
[2026-01-08 21:58:24] total 447248
[2026-01-08 21:58:24] -rwx------. 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:10 pilot3.tar.gz
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:10 queuedata.json
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc       100 Jan  8 17:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:58:24] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 17:24 run_atlas
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc       105 Jan  8 17:24 job.xml
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc      6390 Jan  8 17:24 init_data.xml
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc 224485403 Jan  8 17:24 EVNT.47898824._000646.pool.root.1
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc     15847 Jan  8 17:24 start_atlas.sh
[2026-01-08 21:58:24] drwxrwx--x. 2 boinc boinc        68 Jan  8 17:24 shared
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc    592398 Jan  8 17:24 input.tar.gz
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc         0 Jan  8 17:24 boinc_lockfile
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc      2519 Jan  8 17:24 pandaJob.out
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc    989837 Jan  8 17:28 agis_schedconf.cvmfs.json
[2026-01-08 21:58:24] drwx------. 5 boinc boinc      4096 Jan  8 17:28 pilot3
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc 224325817 Jan  8 21:54 HITS.47898826._019584.pool.root.1
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc       531 Jan  8 21:54 boinc_task_state.xml
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc      1034 Jan  8 21:55 memory_monitor_summary.json
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc   1516240 Jan  8 21:55 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc    473866 Jan  8 21:55 log.47898826._019584.job.log.tgz.1
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc        95 Jan  8 21:57 pilot_heartbeat.json
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc      7785 Jan  8 21:57 heartbeat.json
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc      8192 Jan  8 21:57 boinc_mmap_file
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc        28 Jan  8 21:57 wrapper_checkpoint.txt
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc      4885 Jan  8 21:58 pilotlog.txt
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc   2161381 Jan  8 21:58 log.47898826._019584.job.log.1
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc       357 Jan  8 21:58 output.list
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc       620 Jan  8 21:58 runtime_log
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc   2652160 Jan  8 21:58 result.tar.gz
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc      8833 Jan  8 21:58 runtime_log.err
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc       656 Jan  8 21:58 aYoNDmBD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8ceKDmJTvdzn.diag
[2026-01-08 21:58:24] -rw-r--r--. 1 boinc boinc     20784 Jan  8 21:58 stderr.txt
[2026-01-08 21:58:24] HITS file was successfully produced:
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc 224325817 Jan  8 21:54 shared/HITS.pool.root.1
[2026-01-08 21:58:24]  *** Contents of shared directory: ***
[2026-01-08 21:58:24] total 441488
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc 224485403 Jan  8 17:24 ATLAS.root_0
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc     15847 Jan  8 17:24 start_atlas.sh
[2026-01-08 21:58:24] -rw-r--r--. 2 boinc boinc    592398 Jan  8 17:24 input.tar.gz
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc 224325817 Jan  8 21:54 HITS.pool.root.1
[2026-01-08 21:58:24] -rw-------. 1 boinc boinc   2652160 Jan  8 21:58 result.tar.gz
21:58:26 (11228): run_atlas exited; CPU time 74354.872428
21:58:26 (11228): called boinc_finish(0)

</stderr_txt>
]]>

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