Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:25:47 (70039): wrapper (7.7.26015): starting
11:25:47 (70039): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 11:25:47] Arguments: --nthreads 4
[2026-01-08 11:25:47] Threads: 4
[2026-01-08 11:25:47] Checking for CVMFS
[2026-01-08 11:25:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:25:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:25:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:25:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:25:47] 2.9.2.0 3053 114 60412 154900 1 188 29925646 36864001 0 130560 0 183912 99.988 5730 36037 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 11:25:47] CVMFS is ok
[2026-01-08 11:25:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 11:25:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 11:25:47] Further information can be found at the LHC@home message board.
[2026-01-08 11:25:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:25:47] Checking for apptainer binary...
[2026-01-08 11:25:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:25:47] Running /usr/bin/apptainer --version
[2026-01-08 11:25:47] apptainer version 1.4.1-1.1
[2026-01-08 11:25:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:25:48] thA373a
[2026-01-08 11:25:48] apptainer works
[2026-01-08 11:25:48] Set ATHENA_PROC_NUMBER=4
[2026-01-08 11:25:48] Set ATHENA_CORE_NUMBER=4
[2026-01-08 11:25:48] Starting ATLAS job with PandaID=6962918064
[2026-01-08 11:25:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:04:09]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,655 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | job 6962918064 has completed (purged errors)
[2026-01-08 13:04:09] 2026-01-08 12:03:37,656 | INFO     | overall cleanup function is called
[2026-01-08 13:04:09] 2026-01-08 12:03:38,663 | INFO     | --- collectZombieJob: --- 10, [80402]
[2026-01-08 13:04:09] 2026-01-08 12:03:38,663 | INFO     | zombie collector waiting for pid 80402
[2026-01-08 13:04:09] 2026-01-08 12:03:38,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 13:04:09] 2026-01-08 12:03:38,663 | INFO     | collected zombie processes
[2026-01-08 13:04:09] 2026-01-08 12:03:38,663 | INFO     | will attempt to kill all subprocesses of pid=80402
[2026-01-08 13:04:09] 2026-01-08 12:03:38,708 | INFO     | process IDs to be killed: [80402] (in reverse order)
[2026-01-08 13:04:09] 2026-01-08 12:03:38,741 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 13:04:09] 2026-01-08 12:03:38,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 13:04:09] 2026-01-08 12:03:38,743 | INFO     | did not find any defunct processes belonging to 80402
[2026-01-08 13:04:09] 2026-01-08 12:03:38,744 | INFO     | did not find any defunct processes belonging to 80402
[2026-01-08 13:04:09] 2026-01-08 12:03:38,744 | INFO     | ready for new job
[2026-01-08 13:04:09] 2026-01-08 12:03:38,744 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 13:04:09] 2026-01-08 12:03:38,745 | INFO     | ***************************************
[2026-01-08 13:04:09] 2026-01-08 12:03:38,745 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 13:04:09] 2026-01-08 12:03:38,745 | INFO     | ***************************************
[2026-01-08 13:04:09] 2026-01-08 12:03:38,745 | INFO     | 
[2026-01-08 13:04:09] 2026-01-08 12:03:38,746 | INFO     | architecture information:
[2026-01-08 13:04:09] 2026-01-08 12:03:38,746 | INFO     | executing command: cat /etc/os-release
[2026-01-08 13:04:09] 2026-01-08 12:03:38,760 | INFO     | cat /etc/os-release:
[2026-01-08 13:04:09] NAME="CentOS Linux"
[2026-01-08 13:04:09] VERSION="7 (Core)"
[2026-01-08 13:04:09] ID="centos"
[2026-01-08 13:04:09] ID_LIKE="rhel fedora"
[2026-01-08 13:04:09] VERSION_ID="7"
[2026-01-08 13:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:04:09] ANSI_COLOR="0;31"
[2026-01-08 13:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:04:09] HOME_URL="https://www.centos.org/"
[2026-01-08 13:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:04:09] 
[2026-01-08 13:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:04:09] 
[2026-01-08 13:04:09] 2026-01-08 12:03:38,760 | INFO     | ***************************************
[2026-01-08 13:04:09] 2026-01-08 12:03:39,263 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | INFO     | sufficient remaining disk space (331131912192 B)
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | INFO     | update_server=False
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:04:09] 2026-01-08 12:03:39,280 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 13:04:09] 2026-01-08 12:03:39,281 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:04:09] 2026-01-08 12:03:39,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:04:09] 2026-01-08 12:03:39,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:04:09] 2026-01-08 12:03:39,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:04:09] 2026-01-08 12:03:39,281 | INFO     | aborting loop
[2026-01-08 13:04:09] 2026-01-08 12:03:39,326 | INFO     | all data control threads have been joined
[2026-01-08 13:04:09] 2026-01-08 12:03:39,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:04:09] 2026-01-08 12:03:40,286 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,286 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,287 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,332 | INFO     | [data] control thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,424 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,542 | INFO     | all payload control threads have been joined
[2026-01-08 13:04:09] 2026-01-08 12:03:40,655 | INFO     | all job control threads have been joined
[2026-01-08 13:04:09] 2026-01-08 12:03:40,765 | INFO     | [job] validate thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,792 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:40,954 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,342 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,543 | INFO     | [payload] control thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,549 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,595 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,661 | INFO     | [job] control thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:41,759 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:42,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:04:09] 2026-01-08 12:03:46,659 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:03:49,757 | INFO     | job.realtimelogging is not enabled
[2026-01-08 13:04:09] 2026-01-08 12:03:50,762 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:04:09] 2026-01-08 12:04:02,559 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:04:09] 2026-01-08 12:04:03,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670865528640)>', '<ExcThread(monitor, started 139670230910720)>']
[2026-01-08 13:04:09] 2026-01-08 12:04:04,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:04:09] 2026-01-08 12:04:04,415 | INFO     | [monitor] control thread has ended
[2026-01-08 13:04:09] 2026-01-08 12:04:08,978 | INFO     | all workflow threads have been joined
[2026-01-08 13:04:09] 2026-01-08 12:04:08,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:04:09] 2026-01-08 12:04:08,979 | INFO     | traces error code: 0
[2026-01-08 13:04:09] 2026-01-08 12:04:08,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:04:09] 2026-01-08 12:04:09,057 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:04:09] 2026-01-08 12:04:09,061 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:04:09] 2026-01-08 12:04:09,065 [wrapper] pilotpid: 73824
[2026-01-08 13:04:09] 2026-01-08 12:04:09,069 [wrapper] Pilot exit status: 0
[2026-01-08 13:04:09] 2026-01-08 12:04:09,081 [wrapper] pandaids: 6962918064
[2026-01-08 13:04:09] 2026-01-08 12:04:09,102 [wrapper] cleanup supervisor_pilot   92798 73825
[2026-01-08 13:04:09] 2026-01-08 12:04:09,106 [wrapper] Test setup, not cleaning
[2026-01-08 13:04:09] 2026-01-08 12:04:09,110 [wrapper] apfmon messages muted
[2026-01-08 13:04:09] 2026-01-08 12:04:09,114 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:04:09] 2026-01-08 12:04:09,118 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:04:09]  *** Error codes and diagnostics ***
[2026-01-08 13:04:09]     "exeErrorCode": 0,
[2026-01-08 13:04:09]     "exeErrorDiag": "",
[2026-01-08 13:04:09]     "pilotErrorCode": 0,
[2026-01-08 13:04:09]     "pilotErrorDiag": "",
[2026-01-08 13:04:09]  *** Listing of results directory ***
[2026-01-08 13:04:09] total 440652
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 13:04:09] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:07 queuedata.json
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc       100 Jan  8 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:04:09] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 11:25 run_atlas
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc       105 Jan  8 11:25 job.xml
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc 223367866 Jan  8 11:25 EVNT.47898824._000668.pool.root.1
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc    592404 Jan  8 11:25 input.tar.gz
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:25 start_atlas.sh
[2026-01-08 13:04:09] drwxrwx--x 2 boinc boinc      4096 Jan  8 11:25 shared
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:25 boinc_setup_complete
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc      6377 Jan  8 11:25 init_data.xml
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:25 boinc_lockfile
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc      2519 Jan  8 11:25 pandaJob.out
[2026-01-08 13:04:09] -rw------- 1 boinc boinc    989835 Jan  8 11:25 agis_schedconf.cvmfs.json
[2026-01-08 13:04:09] -rw------- 1 boinc boinc   1516240 Jan  8 11:25 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:04:09] drwx------ 5 boinc boinc      4096 Jan  8 11:25 pilot3
[2026-01-08 13:04:09] -rw------- 1 boinc boinc 221674926 Jan  8 13:03 HITS.47898826._020144.pool.root.1
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc       529 Jan  8 13:03 boinc_task_state.xml
[2026-01-08 13:04:09] -rw------- 1 boinc boinc      1015 Jan  8 13:03 memory_monitor_summary.json
[2026-01-08 13:04:09] -rw------- 1 boinc boinc        95 Jan  8 13:03 pilot_heartbeat.json
[2026-01-08 13:04:09] -rw------- 1 boinc boinc    290457 Jan  8 13:03 log.47898826._020144.job.log.tgz.1
[2026-01-08 13:04:09] -rw------- 1 boinc boinc      7760 Jan  8 13:03 heartbeat.json
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc      8192 Jan  8 13:03 boinc_mmap_file
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc        27 Jan  8 13:03 wrapper_checkpoint.txt
[2026-01-08 13:04:09] -rw------- 1 boinc boinc      4628 Jan  8 13:04 pilotlog.txt
[2026-01-08 13:04:09] -rw------- 1 boinc boinc    849963 Jan  8 13:04 log.47898826._020144.job.log.1
[2026-01-08 13:04:09] -rw------- 1 boinc boinc       357 Jan  8 13:04 output.list
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc       620 Jan  8 13:04 runtime_log
[2026-01-08 13:04:09] -rw------- 1 boinc boinc   1157120 Jan  8 13:04 result.tar.gz
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc      8902 Jan  8 13:04 runtime_log.err
[2026-01-08 13:04:09] -rw------- 1 boinc boinc       660 Jan  8 13:04 mvFMDmEB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiejKDmxggJvm.diag
[2026-01-08 13:04:09] -rw-r--r-- 1 boinc boinc     12823 Jan  8 13:04 stderr.txt
[2026-01-08 13:04:09] HITS file was successfully produced:
[2026-01-08 13:04:09] -rw------- 1 boinc boinc 221674926 Jan  8 13:03 shared/HITS.pool.root.1
[2026-01-08 13:04:09]  *** Contents of shared directory: ***
[2026-01-08 13:04:09] total 436352
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc 223367866 Jan  8 11:25 ATLAS.root_0
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc    592404 Jan  8 11:25 input.tar.gz
[2026-01-08 13:04:09] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:25 start_atlas.sh
[2026-01-08 13:04:09] -rw------- 1 boinc boinc 221674926 Jan  8 13:03 HITS.pool.root.1
[2026-01-08 13:04:09] -rw------- 1 boinc boinc   1157120 Jan  8 13:04 result.tar.gz
13:04:30 (70039): run_atlas exited; CPU time 22254.576566
13:04:30 (70039): called boinc_finish(0)

</stderr_txt>
]]>

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