Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:18:29 (50593): wrapper (7.7.26015): starting
11:18:29 (50593): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 11:18:29] Arguments: --nthreads 4
[2026-01-08 11:18:29] Threads: 4
[2026-01-08 11:18:29] Checking for CVMFS
[2026-01-08 11:18:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:18:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:18:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:18:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:18:29] 2.9.2.0 3053 106 56212 154900 1 180 29924332 36864000 0 130560 0 129391 99.989 5649 38168 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 11:18:29] CVMFS is ok
[2026-01-08 11:18:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 11:18:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 11:18:29] Further information can be found at the LHC@home message board.
[2026-01-08 11:18:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:18:29] Checking for apptainer binary...
[2026-01-08 11:18:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:18:29] Running /usr/bin/apptainer --version
[2026-01-08 11:18:29] apptainer version 1.4.1-1.1
[2026-01-08 11:18:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:18:29] thA373a
[2026-01-08 11:18:29] apptainer works
[2026-01-08 11:18:29] Set ATHENA_PROC_NUMBER=4
[2026-01-08 11:18:29] Set ATHENA_CORE_NUMBER=4
[2026-01-08 11:18:29] Starting ATLAS job with PandaID=6962918854
[2026-01-08 11:18:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:25:43]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:25:43] 2026-01-08 10:25:24,255 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:25:43] 2026-01-08 10:25:24,255 | INFO     | job 6962918854 has completed (purged errors)
[2026-01-08 11:25:43] 2026-01-08 10:25:24,255 | INFO     | overall cleanup function is called
[2026-01-08 11:25:43] 2026-01-08 10:25:25,262 | INFO     | --- collectZombieJob: --- 10, [60989]
[2026-01-08 11:25:43] 2026-01-08 10:25:25,262 | INFO     | zombie collector waiting for pid 60989
[2026-01-08 11:25:43] 2026-01-08 10:25:25,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:25:43] 2026-01-08 10:25:25,263 | INFO     | collected zombie processes
[2026-01-08 11:25:43] 2026-01-08 10:25:25,263 | INFO     | will attempt to kill all subprocesses of pid=60989
[2026-01-08 11:25:43] 2026-01-08 10:25:25,307 | INFO     | process IDs to be killed: [60989] (in reverse order)
[2026-01-08 11:25:43] 2026-01-08 10:25:25,342 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:25:43] 2026-01-08 10:25:25,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:25:43] 2026-01-08 10:25:25,343 | INFO     | did not find any defunct processes belonging to 60989
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | did not find any defunct processes belonging to 60989
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | ready for new job
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | ***************************************
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | ***************************************
[2026-01-08 11:25:43] 2026-01-08 10:25:25,345 | INFO     | 
[2026-01-08 11:25:43] 2026-01-08 10:25:25,346 | INFO     | architecture information:
[2026-01-08 11:25:43] 2026-01-08 10:25:25,346 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:25:43] 2026-01-08 10:25:25,361 | INFO     | cat /etc/os-release:
[2026-01-08 11:25:43] NAME="CentOS Linux"
[2026-01-08 11:25:43] VERSION="7 (Core)"
[2026-01-08 11:25:43] ID="centos"
[2026-01-08 11:25:43] ID_LIKE="rhel fedora"
[2026-01-08 11:25:43] VERSION_ID="7"
[2026-01-08 11:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:25:43] ANSI_COLOR="0;31"
[2026-01-08 11:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:25:43] HOME_URL="https://www.centos.org/"
[2026-01-08 11:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:25:43] 
[2026-01-08 11:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:25:43] 
[2026-01-08 11:25:43] 2026-01-08 10:25:25,361 | INFO     | ***************************************
[2026-01-08 11:25:43] 2026-01-08 10:25:25,864 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 11:25:43] 2026-01-08 10:25:25,883 | INFO     | sufficient remaining disk space (331382521856 B)
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | INFO     | update_server=False
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:25:43] 2026-01-08 10:25:25,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:25:43] 2026-01-08 10:25:25,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:25:43] 2026-01-08 10:25:25,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:25:43] 2026-01-08 10:25:25,885 | INFO     | aborting loop
[2026-01-08 11:25:43] 2026-01-08 10:25:26,018 | INFO     | all data control threads have been joined
[2026-01-08 11:25:43] 2026-01-08 10:25:26,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:25:43] 2026-01-08 10:25:26,890 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:26,890 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:26,890 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,023 | INFO     | [data] control thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,030 | INFO     | all payload control threads have been joined
[2026-01-08 11:25:43] 2026-01-08 10:25:27,138 | INFO     | all job control threads have been joined
[2026-01-08 11:25:43] 2026-01-08 10:25:27,333 | INFO     | [job] validate thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,427 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,508 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,626 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,812 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,891 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:27,981 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:28,036 | INFO     | [payload] control thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:28,144 | INFO     | [job] control thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:28,195 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:28,392 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:30,265 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:25:43] 2026-01-08 10:25:37,168 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:25:43] 2026-01-08 10:25:38,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209268324160)>', '<ExcThread(monitor, started 140208259458816)>']
[2026-01-08 11:25:43] 2026-01-08 10:25:38,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:25:43] 2026-01-08 10:25:38,954 | INFO     | [monitor] control thread has ended
[2026-01-08 11:25:43] 2026-01-08 10:25:43,793 | INFO     | all workflow threads have been joined
[2026-01-08 11:25:43] 2026-01-08 10:25:43,794 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:25:43] 2026-01-08 10:25:43,794 | INFO     | traces error code: 0
[2026-01-08 11:25:43] 2026-01-08 10:25:43,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:25:43] 2026-01-08 10:25:43,873 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:25:43] 2026-01-08 10:25:43,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:25:43] 2026-01-08 10:25:43,881 [wrapper] pilotpid: 54382
[2026-01-08 11:25:43] 2026-01-08 10:25:43,885 [wrapper] Pilot exit status: 0
[2026-01-08 11:25:43] 2026-01-08 10:25:43,897 [wrapper] pandaids: 6962918854
[2026-01-08 11:25:43] 2026-01-08 10:25:43,919 [wrapper] cleanup supervisor_pilot   54388 54383
[2026-01-08 11:25:43] 2026-01-08 10:25:43,923 [wrapper] Test setup, not cleaning
[2026-01-08 11:25:43] 2026-01-08 10:25:43,927 [wrapper] apfmon messages muted
[2026-01-08 11:25:43] 2026-01-08 10:25:43,931 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:25:43] 2026-01-08 10:25:43,935 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:25:43]  *** Error codes and diagnostics ***
[2026-01-08 11:25:43]     "exeErrorCode": 0,
[2026-01-08 11:25:43]     "exeErrorDiag": "",
[2026-01-08 11:25:43]     "pilotErrorCode": 1305,
[2026-01-08 11:25:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Possible memory leak: 'pss' slope: 8158.82 KB/s",
[2026-01-08 11:25:43]  *** Listing of results directory ***
[2026-01-08 11:25:43] total 222920
[2026-01-08 11:25:43] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:07 queuedata.json
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:09 pilot3.tar.gz
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc       100 Jan  8 11:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:25:43] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 11:18 run_atlas
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc       105 Jan  8 11:18 job.xml
[2026-01-08 11:25:43] -rw-r--r-- 2 boinc boinc 223877255 Jan  8 11:18 EVNT.47898824._000832.pool.root.1
[2026-01-08 11:25:43] -rw-r--r-- 2 boinc boinc    592398 Jan  8 11:18 input.tar.gz
[2026-01-08 11:25:43] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:18 start_atlas.sh
[2026-01-08 11:25:43] drwxrwx--x 2 boinc boinc      4096 Jan  8 11:18 shared
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:18 boinc_setup_complete
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc      6377 Jan  8 11:18 init_data.xml
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:18 boinc_lockfile
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc      2519 Jan  8 11:18 pandaJob.out
[2026-01-08 11:25:43] -rw------- 1 boinc boinc    989835 Jan  8 11:18 agis_schedconf.cvmfs.json
[2026-01-08 11:25:43] -rw------- 1 boinc boinc   1516240 Jan  8 11:18 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:25:43] drwx------ 5 boinc boinc      4096 Jan  8 11:18 pilot3
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc       526 Jan  8 11:23 boinc_task_state.xml
[2026-01-08 11:25:43] -rw------- 1 boinc boinc       999 Jan  8 11:23 memory_monitor_summary.json
[2026-01-08 11:25:43] -rw------- 1 boinc boinc    134640 Jan  8 11:23 log.47898826._020874.job.log.tgz.1
[2026-01-08 11:25:43] -rw------- 1 boinc boinc        95 Jan  8 11:24 pilot_heartbeat.json
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc      8192 Jan  8 11:25 boinc_mmap_file
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc        24 Jan  8 11:25 wrapper_checkpoint.txt
[2026-01-08 11:25:43] -rw------- 1 boinc boinc      8636 Jan  8 11:25 heartbeat.json
[2026-01-08 11:25:43] -rw------- 1 boinc boinc      4556 Jan  8 11:25 pilotlog.txt
[2026-01-08 11:25:43] -rw------- 1 boinc boinc    114291 Jan  8 11:25 log.47898826._020874.job.log.1
[2026-01-08 11:25:43] -rw------- 1 boinc boinc       188 Jan  8 11:25 output.list
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc       620 Jan  8 11:25 runtime_log
[2026-01-08 11:25:43] -rw------- 1 boinc boinc    266240 Jan  8 11:25 result.tar.gz
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc      8749 Jan  8 11:25 runtime_log.err
[2026-01-08 11:25:43] -rw------- 1 boinc boinc       651 Jan  8 11:25 i9JLDmmB0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxZeKDmDp6VGo.diag
[2026-01-08 11:25:43] -rw-r--r-- 1 boinc boinc     11031 Jan  8 11:25 stderr.txt
[2026-01-08 11:25:44] No HITS result produced
[2026-01-08 11:25:44]  *** Contents of shared directory: ***
[2026-01-08 11:25:44] total 219492
[2026-01-08 11:25:44] -rw-r--r-- 2 boinc boinc 223877255 Jan  8 11:18 ATLAS.root_0
[2026-01-08 11:25:44] -rw-r--r-- 2 boinc boinc    592398 Jan  8 11:18 input.tar.gz
[2026-01-08 11:25:44] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:18 start_atlas.sh
[2026-01-08 11:25:44] -rw------- 1 boinc boinc    266240 Jan  8 11:25 result.tar.gz
11:25:45 (50593): run_atlas exited; CPU time 137.370809
11:25:45 (50593): called boinc_finish(0)

</stderr_txt>
]]>

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