Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:38:53 (3454237): wrapper (7.7.26015): starting
15:38:53 (3454237): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 15:38:53] Arguments: --nthreads 2
[2026-01-08 15:38:53] Threads: 2
[2026-01-08 15:38:53] Checking for CVMFS
[2026-01-08 15:38:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 15:38:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 15:38:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 15:38:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 15:38:54] 2.9.2.0 3263997 1050 55860 154910 0 57 18629770 36864000 0 130560 0 497744 99.982 45218 20789 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 15:38:54] CVMFS is ok
[2026-01-08 15:38:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 15:38:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 15:38:54] Further information can be found at the LHC@home message board.
[2026-01-08 15:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 15:38:54] Checking for apptainer binary...
[2026-01-08 15:38:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 15:38:54] Running /usr/bin/apptainer --version
[2026-01-08 15:38:54] apptainer version 1.4.1-1.1
[2026-01-08 15:38:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 15:38:54] magicA252b
[2026-01-08 15:38:54] apptainer works
[2026-01-08 15:38:54] Set ATHENA_PROC_NUMBER=2
[2026-01-08 15:38:54] Set ATHENA_CORE_NUMBER=2
[2026-01-08 15:38:54] Starting ATLAS job with PandaID=6962918440
[2026-01-08 15:38:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:33:27]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | job 6962918440 has completed (purged errors)
[2026-01-08 18:33:27] 2026-01-08 17:32:48,287 | INFO     | overall cleanup function is called
[2026-01-08 18:33:27] 2026-01-08 17:32:49,293 | INFO     | --- collectZombieJob: --- 10, [3464369]
[2026-01-08 18:33:27] 2026-01-08 17:32:49,293 | INFO     | zombie collector waiting for pid 3464369
[2026-01-08 18:33:27] 2026-01-08 17:32:49,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:33:27] 2026-01-08 17:32:49,294 | INFO     | collected zombie processes
[2026-01-08 18:33:27] 2026-01-08 17:32:49,294 | INFO     | will attempt to kill all subprocesses of pid=3464369
[2026-01-08 18:33:27] 2026-01-08 17:32:49,326 | INFO     | process IDs to be killed: [3464369] (in reverse order)
[2026-01-08 18:33:27] 2026-01-08 17:32:49,346 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:33:27] 2026-01-08 17:32:49,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:33:27] 2026-01-08 17:32:49,347 | INFO     | did not find any defunct processes belonging to 3464369
[2026-01-08 18:33:27] 2026-01-08 17:32:49,347 | INFO     | did not find any defunct processes belonging to 3464369
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | ready for new job
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | ***************************************
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | ***************************************
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | 
[2026-01-08 18:33:27] 2026-01-08 17:32:49,348 | INFO     | architecture information:
[2026-01-08 18:33:27] 2026-01-08 17:32:49,349 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:33:27] 2026-01-08 17:32:49,357 | INFO     | cat /etc/os-release:
[2026-01-08 18:33:27] NAME="CentOS Linux"
[2026-01-08 18:33:27] VERSION="7 (Core)"
[2026-01-08 18:33:27] ID="centos"
[2026-01-08 18:33:27] ID_LIKE="rhel fedora"
[2026-01-08 18:33:27] VERSION_ID="7"
[2026-01-08 18:33:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:33:27] ANSI_COLOR="0;31"
[2026-01-08 18:33:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:33:27] HOME_URL="https://www.centos.org/"
[2026-01-08 18:33:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:33:27] 
[2026-01-08 18:33:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:33:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:33:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:33:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:33:27] 
[2026-01-08 18:33:27] 2026-01-08 17:32:49,357 | INFO     | ***************************************
[2026-01-08 18:33:27] 2026-01-08 17:32:49,860 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 18:33:27] 2026-01-08 17:32:49,868 | INFO     | sufficient remaining disk space (342477504512 B)
[2026-01-08 18:33:27] 2026-01-08 17:32:49,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:33:27] 2026-01-08 17:32:49,869 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:33:27] 2026-01-08 17:32:49,869 | INFO     | update_server=False
[2026-01-08 18:33:27] 2026-01-08 17:32:49,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:33:27] 2026-01-08 17:32:49,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:33:27] 2026-01-08 17:32:50,004 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 18:33:27] 2026-01-08 17:32:50,005 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 18:33:27] 2026-01-08 17:32:50,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:33:27] 2026-01-08 17:32:50,005 | INFO     | will abort loop
[2026-01-08 18:33:27] 2026-01-08 17:32:50,172 | INFO     | all job control threads have been joined
[2026-01-08 18:33:27] 2026-01-08 17:32:50,477 | INFO     | all data control threads have been joined
[2026-01-08 18:33:27] 2026-01-08 17:32:50,769 | INFO     | all payload control threads have been joined
[2026-01-08 18:33:27] 2026-01-08 17:32:50,875 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:50,875 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:33:27] 2026-01-08 17:32:51,011 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,030 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,175 | INFO     | [job] control thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,406 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,483 | INFO     | [data] control thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:51,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:33:27] 2026-01-08 17:32:51,775 | INFO     | [payload] control thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:52,132 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:52,175 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:52,207 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:52,277 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:52,335 | INFO     | [job] validate thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:53,007 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:32:55,570 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:33:00,095 | INFO     | job.realtimelogging is not enabled
[2026-01-08 18:33:27] 2026-01-08 17:33:01,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:33:27] 2026-01-08 17:33:20,334 | INFO     | PID=3457947 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 18:33:27] 2026-01-08 17:33:20,334 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:33:27] 2026-01-08 17:33:20,334 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:33:27] 2026-01-08 17:33:20,334 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:33:27] 2026-01-08 17:33:21,868 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:33:27] 2026-01-08 17:33:22,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053711812416)>', '<ExcThread(monitor, started 140053204412160)>']
[2026-01-08 18:33:27] 2026-01-08 17:33:23,347 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:33:27] 2026-01-08 17:33:23,347 | INFO     | [monitor] control thread has ended
[2026-01-08 18:33:27] 2026-01-08 17:33:27,710 | INFO     | all workflow threads have been joined
[2026-01-08 18:33:27] 2026-01-08 17:33:27,711 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:33:27] 2026-01-08 17:33:27,711 | INFO     | traces error code: 0
[2026-01-08 18:33:27] 2026-01-08 17:33:27,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:33:27] 2026-01-08 17:33:27,754 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:33:27] 2026-01-08 17:33:27,756 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:33:27] 2026-01-08 17:33:27,758 [wrapper] pilotpid: 3457947
[2026-01-08 18:33:27] 2026-01-08 17:33:27,761 [wrapper] Pilot exit status: 0
[2026-01-08 18:33:27] 2026-01-08 17:33:27,766 [wrapper] pandaids: 6962918440
[2026-01-08 18:33:27] 2026-01-08 17:33:27,778 [wrapper] cleanup supervisor_pilot 3483495 3457948
[2026-01-08 18:33:27] 2026-01-08 17:33:27,780 [wrapper] Test setup, not cleaning
[2026-01-08 18:33:27] 2026-01-08 17:33:27,782 [wrapper] apfmon messages muted
[2026-01-08 18:33:27] 2026-01-08 17:33:27,784 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:33:27] 2026-01-08 17:33:27,786 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:33:27]  *** Error codes and diagnostics ***
[2026-01-08 18:33:27]     "exeErrorCode": 0,
[2026-01-08 18:33:27]     "exeErrorDiag": "",
[2026-01-08 18:33:27]     "pilotErrorCode": 0,
[2026-01-08 18:33:27]     "pilotErrorDiag": "",
[2026-01-08 18:33:27]  *** Listing of results directory ***
[2026-01-08 18:33:27] total 438500
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 18:33:27] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:07 queuedata.json
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc       100 Jan  8 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:33:27] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 15:38 run_atlas
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc       105 Jan  8 15:38 job.xml
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc 224082978 Jan  8 15:38 EVNT.47898824._000795.pool.root.1
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc    592403 Jan  8 15:38 input.tar.gz
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc     15847 Jan  8 15:38 start_atlas.sh
[2026-01-08 18:33:27] drwxrwx--x 2 boinc boinc      4096 Jan  8 15:38 shared
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc         0 Jan  8 15:38 boinc_setup_complete
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc      6208 Jan  8 15:38 init_data.xml
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc         0 Jan  8 15:38 boinc_lockfile
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc      2519 Jan  8 15:38 pandaJob.out
[2026-01-08 18:33:27] -rw------- 1 boinc boinc    989835 Jan  8 15:39 agis_schedconf.cvmfs.json
[2026-01-08 18:33:27] -rw------- 1 boinc boinc   1516240 Jan  8 15:39 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:33:27] drwx------ 5 boinc boinc      4096 Jan  8 15:39 pilot3
[2026-01-08 18:33:27] -rw------- 1 boinc boinc 217442881 Jan  8 18:32 HITS.47898826._020488.pool.root.1
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc       530 Jan  8 18:32 boinc_task_state.xml
[2026-01-08 18:33:27] -rw------- 1 boinc boinc      1017 Jan  8 18:32 memory_monitor_summary.json
[2026-01-08 18:33:27] -rw------- 1 boinc boinc    317564 Jan  8 18:32 log.47898826._020488.job.log.tgz.1
[2026-01-08 18:33:27] -rw------- 1 boinc boinc      7762 Jan  8 18:32 heartbeat.json
[2026-01-08 18:33:27] -rw------- 1 boinc boinc        95 Jan  8 18:33 pilot_heartbeat.json
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc      8192 Jan  8 18:33 boinc_mmap_file
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc        28 Jan  8 18:33 wrapper_checkpoint.txt
[2026-01-08 18:33:27] -rw------- 1 boinc boinc      5010 Jan  8 18:33 pilotlog.txt
[2026-01-08 18:33:27] -rw------- 1 boinc boinc   1481603 Jan  8 18:33 log.47898826._020488.job.log.1
[2026-01-08 18:33:27] -rw------- 1 boinc boinc       357 Jan  8 18:33 output.list
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc       620 Jan  8 18:33 runtime_log
[2026-01-08 18:33:27] -rw------- 1 boinc boinc   1822720 Jan  8 18:33 result.tar.gz
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc      8918 Jan  8 18:33 runtime_log.err
[2026-01-08 18:33:27] -rw------- 1 boinc boinc       665 Jan  8 18:33 TuKODmYB0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEXeKDmq7GWTm.diag
[2026-01-08 18:33:27] -rw-r--r-- 1 boinc boinc     12156 Jan  8 18:33 stderr.txt
[2026-01-08 18:33:27] HITS file was successfully produced:
[2026-01-08 18:33:27] -rw------- 1 boinc boinc 217442881 Jan  8 18:32 shared/HITS.pool.root.1
[2026-01-08 18:33:27]  *** Contents of shared directory: ***
[2026-01-08 18:33:27] total 433560
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc 224082978 Jan  8 15:38 ATLAS.root_0
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc    592403 Jan  8 15:38 input.tar.gz
[2026-01-08 18:33:27] -rw-r--r-- 2 boinc boinc     15847 Jan  8 15:38 start_atlas.sh
[2026-01-08 18:33:27] -rw------- 1 boinc boinc 217442881 Jan  8 18:32 HITS.pool.root.1
[2026-01-08 18:33:27] -rw------- 1 boinc boinc   1822720 Jan  8 18:33 result.tar.gz
18:33:29 (3454237): run_atlas exited; CPU time 20395.045057
18:33:29 (3454237): called boinc_finish(0)

</stderr_txt>
]]>

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