Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:26:29 (11247): wrapper (7.7.26015): starting
16:26:29 (11247): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 16:26:29] Arguments: --nthreads 8
[2026-01-08 16:26:29] Threads: 8
[2026-01-08 16:26:29] Checking for CVMFS
[2026-01-08 16:26:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:26:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:26:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:26:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:26:32] 2.11.2.0 16377 34131 98948 154912 3 61 19307860 25165825 96 130560 0 14721769 99.832 7727528 3570 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 16:26:32] CVMFS is ok
[2026-01-08 16:26:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:26:32] Checking for apptainer binary...
[2026-01-08 16:26:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:26:32] Running /usr/bin/apptainer --version
[2026-01-08 16:26:32] apptainer version 1.3.2-1.el7
[2026-01-08 16:26:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:26:46] cg-vwn414.simple-grid.lan
[2026-01-08 16:26:46] apptainer works
[2026-01-08 16:26:46] Set ATHENA_PROC_NUMBER=8
[2026-01-08 16:26:46] Set ATHENA_CORE_NUMBER=8
[2026-01-08 16:26:47] Starting ATLAS job with PandaID=6962916046
[2026-01-08 16:26:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:01:39]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:01:39] 2026-01-08 20:00:35,504 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 21:01:39] 2026-01-08 20:00:35,505 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 21:01:39] 2026-01-08 20:00:35,507 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6962916046/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,507 | INFO     | extracted standard info from prmon json
[2026-01-08 21:01:39] 2026-01-08 20:00:35,507 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 21:01:39] 2026-01-08 20:00:35,508 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 21:01:39] 2026-01-08 20:00:35,508 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:01:39] 2026-01-08 20:00:35,508 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:01:39] 2026-01-08 20:00:35,514 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:01:39] 2026-01-08 20:00:35,514 | INFO     | sum of square deviations: 5576683165.5
[2026-01-08 21:01:39] 2026-01-08 20:00:35,517 | INFO     | sum of deviations: -27455553013.000004
[2026-01-08 21:01:39] 2026-01-08 20:00:35,517 | INFO     | mean x: 1767894307.5
[2026-01-08 21:01:39] 2026-01-08 20:00:35,517 | INFO     | mean y: 2511577.8396946564
[2026-01-08 21:01:39] 2026-01-08 20:00:35,517 | INFO     | intersect: 8706344024.558096
[2026-01-08 21:01:39] 2026-01-08 20:00:35,518 | INFO     | chi2: 2.492927681499327
[2026-01-08 21:01:39] 2026-01-08 20:00:35,518 | INFO     | sum of square deviations: 5263458688.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,521 | INFO     | sum of deviations: -9562542145.999996
[2026-01-08 21:01:39] 2026-01-08 20:00:35,521 | INFO     | mean x: 1767894155.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,521 | INFO     | mean y: 2520158.6848249026
[2026-01-08 21:01:39] 2026-01-08 20:00:35,521 | INFO     | intersect: 3214393447.516184
[2026-01-08 21:01:39] 2026-01-08 20:00:35,522 | INFO     | chi2: 1.7269931697425502
[2026-01-08 21:01:39] 2026-01-08 20:00:35,522 | INFO     | current chi2=1.7269931697425502 (change=30.72429727669112 %)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,522 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,525 | INFO     | sum of deviations: -9329669278.000004
[2026-01-08 21:01:39] 2026-01-08 20:00:35,525 | INFO     | mean x: 1767894002.5
[2026-01-08 21:01:39] 2026-01-08 20:00:35,525 | INFO     | mean y: 2520276.5714285714
[2026-01-08 21:01:39] 2026-01-08 20:00:35,525 | INFO     | intersect: 3326430337.581972
[2026-01-08 21:01:39] 2026-01-08 20:00:35,525 | INFO     | chi2: 1.7265206411791547
[2026-01-08 21:01:39] 2026-01-08 20:00:35,526 | INFO     | current chi2=1.7265206411791547 (change=0.027361345237165366 %)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,526 | INFO     | right removable region: 251
[2026-01-08 21:01:39] 2026-01-08 20:00:35,526 | INFO     | sum of square deviations: 5263458688.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | sum of deviations: -67345286917.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | mean x: 1767894460.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | mean y: 2530825.894941634
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | intersect: 22622516410.4906
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | chi2: 1.0274615391798794
[2026-01-08 21:01:39] 2026-01-08 20:00:35,529 | INFO     | current chi2=1.0274615391798794 (change=58.784944031672396 %)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,530 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,532 | INFO     | sum of deviations: -69636912194.49998
[2026-01-08 21:01:39] 2026-01-08 20:00:35,532 | INFO     | mean x: 1767894612.5
[2026-01-08 21:01:39] 2026-01-08 20:00:35,532 | INFO     | mean y: 2531969.7896825396
[2026-01-08 21:01:39] 2026-01-08 20:00:35,533 | INFO     | intersect: 24812298107.256477
[2026-01-08 21:01:39] 2026-01-08 20:00:35,533 | INFO     | chi2: 1.003816641708972
[2026-01-08 21:01:39] 2026-01-08 20:00:35,533 | INFO     | current chi2=1.003816641708972 (change=2.301292707246321 %)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,533 | INFO     | left removable region: 20
[2026-01-08 21:01:39] 2026-01-08 20:00:35,534 | INFO     | sum of square deviations: 3822136780.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,536 | INFO     | sum of deviations: -35370284347.000015
[2026-01-08 21:01:39] 2026-01-08 20:00:35,536 | INFO     | mean x: 1767894582.0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,536 | INFO     | mean y: 2533104.2034632033
[2026-01-08 21:01:39] 2026-01-08 20:00:35,536 | INFO     | intersect: 16362736220.969143
[2026-01-08 21:01:39] 2026-01-08 20:00:35,536 | INFO     | chi2: 0.18887524769575945
[2026-01-08 21:01:39] 2026-01-08 20:00:35,537 | INFO     | current memory leak: -9.25 B/s (using 231 data points, chi2=0.19)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,537 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | ..............................
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . Timing measurements:
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . get job = 0 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . initial setup = 11 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . payload setup = 8 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . stage-in = 0 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . payload execution = 15988 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . stage-out = 4 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | . log creation = 2 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,538 | INFO     | ..............................
[2026-01-08 21:01:39] 2026-01-08 20:00:35,662 | INFO     | 
[2026-01-08 21:01:39] 2026-01-08 20:00:35,662 | INFO     | job summary report
[2026-01-08 21:01:39] 2026-01-08 20:00:35,662 | INFO     | --------------------------------------------------
[2026-01-08 21:01:39] 2026-01-08 20:00:35,662 | INFO     | PanDA job id: 6962916046
[2026-01-08 21:01:39] 2026-01-08 20:00:35,662 | INFO     | task id: 47898826
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | errors: (none)
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | pilot state: finished 
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | transexitcode: 0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | exeerrorcode: 0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | exeerrordiag: 
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | exitcode: 0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | exitmsg: OK
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | cpuconsumptiontime: 80137 s
[2026-01-08 21:01:39] 2026-01-08 20:00:35,663 | INFO     | nevents: 400
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | neventsw: 0
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | pid: 21481
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | pgrp: 21481
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | corecount: 8
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | event service: False
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | sizes: {0: 2283741, 1: 2283996, 12: 2283996, 23: 2284024, 33: 2284052, 44: 2284108, 53: 2284526, 55: 2284554, 16000: 2315464, 16005: 2324462, 16007: 2324518, 16111
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | --------------------------------------------------
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | 
[2026-01-08 21:01:39] 2026-01-08 20:00:35,664 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-08 21:01:39] 2026-01-08 20:00:36,282 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:01:39] 2026-01-08 20:00:36,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,285 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:01:39] 2026-01-08 20:00:36,285 | INFO     | job 6962916046 has completed (purged errors)
[2026-01-08 21:01:39] 2026-01-08 20:00:36,285 | INFO     | overall cleanup function is called
[2026-01-08 21:01:39] 2026-01-08 20:00:37,294 | INFO     | --- collectZombieJob: --- 10, [21481]
[2026-01-08 21:01:39] 2026-01-08 20:00:37,294 | INFO     | zombie collector waiting for pid 21481
[2026-01-08 21:01:39] 2026-01-08 20:00:37,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:01:39] 2026-01-08 20:00:37,294 | INFO     | collected zombie processes
[2026-01-08 21:01:39] 2026-01-08 20:00:37,295 | INFO     | will attempt to kill all subprocesses of pid=21481
[2026-01-08 21:01:39] 2026-01-08 20:00:37,390 | INFO     | process IDs to be killed: [21481] (in reverse order)
[2026-01-08 21:01:39] 2026-01-08 20:00:38,471 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:01:39] 2026-01-08 20:00:38,472 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:01:39] 2026-01-08 20:00:38,474 | INFO     | did not find any defunct processes belonging to 21481
[2026-01-08 21:01:39] 2026-01-08 20:00:38,476 | INFO     | did not find any defunct processes belonging to 21481
[2026-01-08 21:01:39] 2026-01-08 20:00:38,476 | INFO     | ready for new job
[2026-01-08 21:01:39] 2026-01-08 20:00:38,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:01:39] 2026-01-08 20:00:38,478 | INFO     | ***************************************
[2026-01-08 21:01:39] 2026-01-08 20:00:38,478 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:01:39] 2026-01-08 20:00:38,478 | INFO     | ***************************************
[2026-01-08 21:01:39] 2026-01-08 20:00:38,478 | INFO     | 
[2026-01-08 21:01:39] 2026-01-08 20:00:38,479 | INFO     | pilot is running in a VM
[2026-01-08 21:01:39] 2026-01-08 20:00:38,479 | INFO     | architecture information:
[2026-01-08 21:01:39] 2026-01-08 20:00:38,489 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:01:39] 2026-01-08 20:00:38,769 | INFO     | cat /etc/os-release:
[2026-01-08 21:01:39] NAME="CentOS Linux"
[2026-01-08 21:01:39] VERSION="7 (Core)"
[2026-01-08 21:01:39] ID="centos"
[2026-01-08 21:01:39] ID_LIKE="rhel fedora"
[2026-01-08 21:01:39] VERSION_ID="7"
[2026-01-08 21:01:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:01:39] ANSI_COLOR="0;31"
[2026-01-08 21:01:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:01:39] HOME_URL="https://www.centos.org/"
[2026-01-08 21:01:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:01:39] 
[2026-01-08 21:01:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:01:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:01:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:01:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:01:39] 
[2026-01-08 21:01:39] 2026-01-08 20:00:38,770 | INFO     | ***************************************
[2026-01-08 21:01:39] 2026-01-08 20:00:39,273 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-08 21:01:39] 2026-01-08 20:00:39,572 | INFO     | sufficient remaining disk space (496891854848 B)
[2026-01-08 21:01:39] 2026-01-08 20:00:39,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:01:39] 2026-01-08 20:00:39,573 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:01:39] 2026-01-08 20:00:39,573 | INFO     | update_server=False
[2026-01-08 21:01:39] 2026-01-08 20:00:39,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:01:39] 2026-01-08 20:00:39,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:01:39] 2026-01-08 20:00:39,574 | INFO     | aborting loop
[2026-01-08 21:01:39] 2026-01-08 20:00:40,138 | INFO     | all payload control threads have been joined
[2026-01-08 21:01:39] 2026-01-08 20:00:40,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:01:39] 2026-01-08 20:00:40,404 | INFO     | all data control threads have been joined
[2026-01-08 21:01:39] 2026-01-08 20:00:40,579 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:40,580 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:40,667 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:40,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:01:39] 2026-01-08 20:00:40,686 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:40,869 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:40,920 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,133 | INFO     | all job control threads have been joined
[2026-01-08 21:01:39] 2026-01-08 20:00:41,144 | INFO     | [payload] control thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:01:39] 2026-01-08 20:00:41,397 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,410 | INFO     | [data] control thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,531 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,594 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,689 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:41,724 | INFO     | [job] validate thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:42,139 | INFO     | [job] control thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:42,216 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:00:45,345 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:01:39] 2026-01-08 20:01:01,729 [wrapper] supervise_pilot (15 min periods counter: 19)
[2026-01-08 21:01:39] 2026-01-08 20:01:08,409 | INFO     | PID=14965 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 21:01:39] 2026-01-08 20:01:08,410 | INFO     | .. there are 2 such processes running
[2026-01-08 21:01:39] 2026-01-08 20:01:08,411 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:01:39] 2026-01-08 20:01:08,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:01:39] 2026-01-08 20:01:08,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:01:39] 2026-01-08 20:01:28,621 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:01:39] 2026-01-08 20:01:29,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421965342528)>', '<ExcThread(monitor, started 140421523035904)>']
[2026-01-08 21:01:39] 2026-01-08 20:01:30,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:01:39] 2026-01-08 20:01:30,543 | INFO     | [monitor] control thread has ended
[2026-01-08 21:01:39] 2026-01-08 20:01:34,653 | INFO     | all workflow threads have been joined
[2026-01-08 21:01:39] 2026-01-08 20:01:34,653 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:01:39] 2026-01-08 20:01:34,653 | INFO     | traces error code: 0
[2026-01-08 21:01:39] 2026-01-08 20:01:34,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:01:39] 2026-01-08 20:01:34,887 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:01:39] 2026-01-08 20:01:34,985 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:01:39] 2026-01-08 20:01:35,074 [wrapper] pilotpid: 14965
[2026-01-08 21:01:39] 2026-01-08 20:01:35,134 [wrapper] Pilot exit status: 0
[2026-01-08 21:01:39] 2026-01-08 20:01:35,652 [wrapper] pandaids: 6962916046
[2026-01-08 21:01:39] 2026-01-08 20:01:36,478 [wrapper] cleanup supervisor_pilot  1672 14966
[2026-01-08 21:01:39] 2026-01-08 20:01:36,561 [wrapper] Test setup, not cleaning
[2026-01-08 21:01:39] 2026-01-08 20:01:36,665 [wrapper] apfmon messages muted
[2026-01-08 21:01:39] 2026-01-08 20:01:36,783 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:01:39] 2026-01-08 20:01:36,901 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:01:39]  *** Error codes and diagnostics ***
[2026-01-08 21:01:39]     "exeErrorCode": 0,
[2026-01-08 21:01:39]     "exeErrorDiag": "",
[2026-01-08 21:01:39]     "pilotErrorCode": 0,
[2026-01-08 21:01:39]     "pilotErrorDiag": "",
[2026-01-08 21:01:39]  *** Listing of results directory ***
[2026-01-08 21:01:39] total 438080
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 21:01:39] -rwx------. 1 boinc boinc     36322 Jan  8 09:03 runpilot2-wrapper.sh
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:05 queuedata.json
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc       100 Jan  8 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:01:39] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 16:26 run_atlas
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc       105 Jan  8 16:26 job.xml
[2026-01-08 21:01:39] -rw-r--r--. 2 boinc boinc 221942950 Jan  8 16:26 EVNT.47898824._000443.pool.root.1
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc      6390 Jan  8 16:26 init_data.xml
[2026-01-08 21:01:39] -rw-r--r--. 2 boinc boinc     15847 Jan  8 16:26 start_atlas.sh
[2026-01-08 21:01:39] drwxrwx--x. 2 boinc boinc        68 Jan  8 16:26 shared
[2026-01-08 21:01:39] -rw-r--r--. 2 boinc boinc    592397 Jan  8 16:26 input.tar.gz
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc         0 Jan  8 16:26 boinc_lockfile
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc      2518 Jan  8 16:26 pandaJob.out
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc    989843 Jan  8 16:30 agis_schedconf.cvmfs.json
[2026-01-08 21:01:39] drwx------. 5 boinc boinc      4096 Jan  8 16:31 pilot3
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc 217438320 Jan  8 20:57 HITS.47898826._018633.pool.root.1
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc       531 Jan  8 20:57 boinc_task_state.xml
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc      1022 Jan  8 20:58 memory_monitor_summary.json
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc   1516240 Jan  8 20:58 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc    475725 Jan  8 20:58 log.47898826._018633.job.log.tgz.1
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc      7779 Jan  8 21:00 heartbeat.json
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc        95 Jan  8 21:01 pilot_heartbeat.json
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc        28 Jan  8 21:01 wrapper_checkpoint.txt
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc      8192 Jan  8 21:01 boinc_mmap_file
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc      4884 Jan  8 21:01 pilotlog.txt
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc   2179640 Jan  8 21:01 log.47898826._018633.job.log.1
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc       357 Jan  8 21:01 output.list
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc       620 Jan  8 21:01 runtime_log
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc   2672640 Jan  8 21:01 result.tar.gz
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc      8817 Jan  8 21:01 runtime_log.err
[2026-01-08 21:01:39] -rw-------. 1 boinc boinc       656 Jan  8 21:01 KQDMDmDA0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXXjKDm4TGRLm.diag
[2026-01-08 21:01:39] -rw-r--r--. 1 boinc boinc     20758 Jan  8 21:01 stderr.txt
[2026-01-08 21:01:39] HITS file was successfully produced:
[2026-01-08 21:01:40] -rw-------. 1 boinc boinc 217438320 Jan  8 20:57 shared/HITS.pool.root.1
[2026-01-08 21:01:40]  *** Contents of shared directory: ***
[2026-01-08 21:01:40] total 432296
[2026-01-08 21:01:40] -rw-r--r--. 2 boinc boinc 221942950 Jan  8 16:26 ATLAS.root_0
[2026-01-08 21:01:40] -rw-r--r--. 2 boinc boinc     15847 Jan  8 16:26 start_atlas.sh
[2026-01-08 21:01:40] -rw-r--r--. 2 boinc boinc    592397 Jan  8 16:26 input.tar.gz
[2026-01-08 21:01:40] -rw-------. 1 boinc boinc 217438320 Jan  8 20:57 HITS.pool.root.1
[2026-01-08 21:01:40] -rw-------. 1 boinc boinc   2672640 Jan  8 21:01 result.tar.gz
21:01:41 (11247): run_atlas exited; CPU time 80287.787160
21:01:41 (11247): called boinc_finish(0)

</stderr_txt>
]]>

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