Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:49:50 (4585): wrapper (7.7.26015): starting
13:49:50 (4585): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 13:49:50] Arguments: --nthreads 8
[2026-01-08 13:49:50] Threads: 8
[2026-01-08 13:49:50] Checking for CVMFS
[2026-01-08 13:49:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:49:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:49:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:49:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:49:54] 2.11.2.0 11184 33996 96776 154908 3 60 20207949 25165824 96 130560 0 14609811 99.815 10323933 3210 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 13:49:54] CVMFS is ok
[2026-01-08 13:49:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:49:54] Checking for apptainer binary...
[2026-01-08 13:49:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:49:54] Running /usr/bin/apptainer --version
[2026-01-08 13:49:54] apptainer version 1.3.2-1.el7
[2026-01-08 13:49:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:50:16] cg-vwn432.simple-grid.lan
[2026-01-08 13:50:16] apptainer works
[2026-01-08 13:50:16] Set ATHENA_PROC_NUMBER=8
[2026-01-08 13:50:16] Set ATHENA_CORE_NUMBER=8
[2026-01-08 13:50:17] Starting ATLAS job with PandaID=6962915998
[2026-01-08 13:50:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 20:09:38]  *** The last 200 lines of the pilot log: ***
[2026-01-08 20:09:38] 2026-01-08 19:08:54,812 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6962915998/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,812 | INFO     | extracted standard info from prmon json
[2026-01-08 20:09:38] 2026-01-08 19:08:54,813 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 20:09:38] 2026-01-08 19:08:54,813 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 20:09:38] 2026-01-08 19:08:54,813 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 20:09:38] 2026-01-08 19:08:54,813 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 20:09:38] 2026-01-08 19:08:54,821 | INFO     | fitting pss+swap vs Time
[2026-01-08 20:09:38] 2026-01-08 19:08:54,822 | INFO     | sum of square deviations: 14108461738.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,826 | INFO     | sum of deviations: 182165329557.99997
[2026-01-08 20:09:38] 2026-01-08 19:08:54,827 | INFO     | mean x: 1767888302.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,827 | INFO     | mean y: 2448130.43697479
[2026-01-08 20:09:38] 2026-01-08 19:08:54,827 | INFO     | intersect: -22824133614.343388
[2026-01-08 20:09:38] 2026-01-08 19:08:54,852 | INFO     | chi2: 7.25216516526168
[2026-01-08 20:09:38] 2026-01-08 19:08:54,853 | INFO     | sum of square deviations: 13523929848.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,857 | INFO     | sum of deviations: 202963586845.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,857 | INFO     | mean x: 1767888149.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,857 | INFO     | mean y: 2453486.372159091
[2026-01-08 20:09:38] 2026-01-08 19:08:54,857 | INFO     | intersect: -26529547492.41416
[2026-01-08 20:09:38] 2026-01-08 19:08:54,858 | INFO     | chi2: 6.520788675915296
[2026-01-08 20:09:38] 2026-01-08 19:08:54,858 | INFO     | current chi2=6.520788675915296 (change=10.084939775637249 %)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,858 | INFO     | right removable region: 351
[2026-01-08 20:09:38] 2026-01-08 19:08:54,859 | INFO     | sum of square deviations: 13523929848.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,863 | INFO     | sum of deviations: 57585541378.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,863 | INFO     | mean x: 1767888454.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,863 | INFO     | mean y: 2480616.4630681816
[2026-01-08 20:09:38] 2026-01-08 19:08:54,863 | INFO     | intersect: -7525273142.496105
[2026-01-08 20:09:38] 2026-01-08 19:08:54,864 | INFO     | chi2: 2.530948030286562
[2026-01-08 20:09:38] 2026-01-08 19:08:54,864 | INFO     | current chi2=2.530948030286562 (change=65.10079441640464 %)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,865 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,869 | INFO     | sum of deviations: -15435303482.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,869 | INFO     | mean x: 1767888607.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,869 | INFO     | mean y: 2500162.5389048993
[2026-01-08 20:09:38] 2026-01-08 19:08:54,869 | INFO     | intersect: 2108735177.3147998
[2026-01-08 20:09:38] 2026-01-08 19:08:54,870 | INFO     | chi2: 0.8136826460739136
[2026-01-08 20:09:38] 2026-01-08 19:08:54,870 | INFO     | current chi2=0.8136826460739136 (change=67.85067744035085 %)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,871 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,875 | INFO     | sum of deviations: -22746580390.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,875 | INFO     | mean x: 1767888759.5
[2026-01-08 20:09:38] 2026-01-08 19:08:54,875 | INFO     | mean y: 2502172.4707602337
[2026-01-08 20:09:38] 2026-01-08 19:08:54,875 | INFO     | intersect: 3244539580.687685
[2026-01-08 20:09:38] 2026-01-08 19:08:54,876 | INFO     | chi2: 0.7897778789576593
[2026-01-08 20:09:38] 2026-01-08 19:08:54,876 | INFO     | current chi2=0.7897778789576593 (change=2.9378489551911695 %)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,876 | INFO     | left removable region: 30
[2026-01-08 20:09:38] 2026-01-08 19:08:54,877 | INFO     | sum of square deviations: 10256266720.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,880 | INFO     | sum of deviations: -2616516370.999998
[2026-01-08 20:09:38] 2026-01-08 19:08:54,880 | INFO     | mean x: 1767889034.0
[2026-01-08 20:09:38] 2026-01-08 19:08:54,880 | INFO     | mean y: 2509311.3613707167
[2026-01-08 20:09:38] 2026-01-08 19:08:54,881 | INFO     | intersect: 453522406.6577431
[2026-01-08 20:09:38] 2026-01-08 19:08:54,881 | INFO     | chi2: 0.0051477730400867165
[2026-01-08 20:09:38] 2026-01-08 19:08:54,881 | INFO     | current memory leak: -0.26 B/s (using 321 data points, chi2=0.01)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,882 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 20:09:38] 2026-01-08 19:08:54,882 | INFO     | ..............................
[2026-01-08 20:09:38] 2026-01-08 19:08:54,882 | INFO     | . Timing measurements:
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . get job = 0 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . initial setup = 11 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . payload setup = 160 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . stage-in = 0 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . payload execution = 21938 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . stage-out = 4 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | . log creation = 1 s
[2026-01-08 20:09:38] 2026-01-08 19:08:54,883 | INFO     | ..............................
[2026-01-08 20:09:38] 2026-01-08 19:08:54,939 | INFO     | time since job start (22445s) is within the limit (174528.0s)
[2026-01-08 20:09:38] 2026-01-08 19:08:55,053 | INFO     | 
[2026-01-08 20:09:38] 2026-01-08 19:08:55,053 | INFO     | job summary report
[2026-01-08 20:09:38] 2026-01-08 19:08:55,053 | INFO     | --------------------------------------------------
[2026-01-08 20:09:38] 2026-01-08 19:08:55,053 | INFO     | PanDA job id: 6962915998
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | task id: 47898826
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | errors: (none)
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | pilot state: finished 
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | transexitcode: 0
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | exeerrorcode: 0
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | exeerrordiag: 
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | exitcode: 0
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | exitmsg: OK
[2026-01-08 20:09:38] 2026-01-08 19:08:55,054 | INFO     | cpuconsumptiontime: 82526 s
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | nevents: 400
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | neventsw: 0
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | pid: 14840
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | pgrp: 14840
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | corecount: 8
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | event service: False
[2026-01-08 20:09:38] 2026-01-08 19:08:55,055 | INFO     | sizes: {0: 2283140, 1: 2283825, 2: 2284024, 3: 2284024, 13: 2284052, 24: 2284108, 35: 2284264, 45: 2284292, 56: 2284320, 67: 2284348, 78: 2284376, 88: 2284712, 99:
[2026-01-08 20:09:38] 2026-01-08 19:08:55,056 | INFO     | --------------------------------------------------
[2026-01-08 20:09:38] 2026-01-08 19:08:55,056 | INFO     | 
[2026-01-08 20:09:38] 2026-01-08 19:08:55,056 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-08 20:09:38] 2026-01-08 19:08:55,469 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 20:09:38] 2026-01-08 19:08:55,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,472 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 20:09:38] 2026-01-08 19:08:55,472 | INFO     | job 6962915998 has completed (purged errors)
[2026-01-08 20:09:38] 2026-01-08 19:08:55,472 | INFO     | overall cleanup function is called
[2026-01-08 20:09:38] 2026-01-08 19:08:56,063 | INFO     | PID=8320 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 20:09:38] 2026-01-08 19:08:56,063 | INFO     | .. there are 2 such processes running
[2026-01-08 20:09:38] 2026-01-08 19:08:56,481 | INFO     | --- collectZombieJob: --- 10, [14840]
[2026-01-08 20:09:38] 2026-01-08 19:08:56,482 | INFO     | zombie collector waiting for pid 14840
[2026-01-08 20:09:38] 2026-01-08 19:08:56,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 20:09:38] 2026-01-08 19:08:56,482 | INFO     | collected zombie processes
[2026-01-08 20:09:38] 2026-01-08 19:08:56,482 | INFO     | will attempt to kill all subprocesses of pid=14840
[2026-01-08 20:09:38] 2026-01-08 19:08:56,579 | INFO     | process IDs to be killed: [14840] (in reverse order)
[2026-01-08 20:09:38] 2026-01-08 19:08:57,561 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 20:09:38] 2026-01-08 19:08:57,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 20:09:38] 2026-01-08 19:08:57,563 | INFO     | did not find any defunct processes belonging to 14840
[2026-01-08 20:09:38] 2026-01-08 19:08:57,565 | INFO     | did not find any defunct processes belonging to 14840
[2026-01-08 20:09:38] 2026-01-08 19:08:57,565 | INFO     | ready for new job
[2026-01-08 20:09:38] 2026-01-08 19:08:57,566 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 20:09:38] 2026-01-08 19:08:57,568 | INFO     | ***************************************
[2026-01-08 20:09:38] 2026-01-08 19:08:57,568 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 20:09:38] 2026-01-08 19:08:57,568 | INFO     | ***************************************
[2026-01-08 20:09:38] 2026-01-08 19:08:57,569 | INFO     | 
[2026-01-08 20:09:38] 2026-01-08 19:08:57,569 | INFO     | pilot is running in a VM
[2026-01-08 20:09:38] 2026-01-08 19:08:57,569 | INFO     | architecture information:
[2026-01-08 20:09:38] 2026-01-08 19:08:57,591 | INFO     | executing command: cat /etc/os-release
[2026-01-08 20:09:38] 2026-01-08 19:08:57,894 | INFO     | cat /etc/os-release:
[2026-01-08 20:09:38] NAME="CentOS Linux"
[2026-01-08 20:09:38] VERSION="7 (Core)"
[2026-01-08 20:09:38] ID="centos"
[2026-01-08 20:09:38] ID_LIKE="rhel fedora"
[2026-01-08 20:09:38] VERSION_ID="7"
[2026-01-08 20:09:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 20:09:38] ANSI_COLOR="0;31"
[2026-01-08 20:09:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 20:09:38] HOME_URL="https://www.centos.org/"
[2026-01-08 20:09:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 20:09:38] 
[2026-01-08 20:09:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 20:09:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 20:09:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 20:09:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 20:09:38] 
[2026-01-08 20:09:38] 2026-01-08 19:08:57,894 | INFO     | ***************************************
[2026-01-08 20:09:38] 2026-01-08 19:08:58,398 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-08 20:09:38] 2026-01-08 19:08:58,670 | INFO     | sufficient remaining disk space (496322478080 B)
[2026-01-08 20:09:38] 2026-01-08 19:08:58,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 20:09:38] 2026-01-08 19:08:58,671 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 20:09:38] 2026-01-08 19:08:58,671 | INFO     | update_server=False
[2026-01-08 20:09:38] 2026-01-08 19:08:58,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 20:09:38] 2026-01-08 19:08:58,862 | INFO     | all data control threads have been joined
[2026-01-08 20:09:38] 2026-01-08 19:08:58,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:09:38] 2026-01-08 19:08:58,924 | INFO     | aborting loop
[2026-01-08 20:09:38] 2026-01-08 19:08:59,224 | INFO     | all job control threads have been joined
[2026-01-08 20:09:38] 2026-01-08 19:08:59,676 | INFO     | [job] retrieve thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:08:59,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 20:09:38] 2026-01-08 19:08:59,868 | INFO     | [data] control thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:08:59,908 | INFO     | all payload control threads have been joined
[2026-01-08 20:09:38] 2026-01-08 19:08:59,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 20:09:38] 2026-01-08 19:08:59,929 | INFO     | [job] job monitor thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,059 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:09:38] 2026-01-08 19:09:00,115 | INFO     | [payload] failed_post thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,230 | INFO     | [job] control thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,361 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,476 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,685 | INFO     | [job] validate thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,917 | INFO     | [payload] control thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:00,985 | INFO     | [payload] validate_post thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:01,084 | INFO     | [job] queue monitor thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:01,119 | INFO     | [data] copytool_in thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:01,133 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:01,774 | INFO     | [data] copytool_out thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:03,920 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 20:09:38] 2026-01-08 19:09:27,663 | INFO     | [monitor] cgroup control has ended
[2026-01-08 20:09:38] 2026-01-08 19:09:28,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472423237440)>', '<ExcThread(monitor, started 140471837898496)>']
[2026-01-08 20:09:38] 2026-01-08 19:09:28,183 | INFO     | PID=8320 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 20:09:38] 2026-01-08 19:09:28,184 | INFO     | .. there are 2 such processes running
[2026-01-08 20:09:38] 2026-01-08 19:09:28,191 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 20:09:38] 2026-01-08 19:09:28,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 20:09:38] 2026-01-08 19:09:28,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 20:09:38] 2026-01-08 19:09:28,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 20:09:38] 2026-01-08 19:09:28,192 | INFO     | [monitor] control thread has ended
[2026-01-08 20:09:38] 2026-01-08 19:09:33,137 | INFO     | all workflow threads have been joined
[2026-01-08 20:09:38] 2026-01-08 19:09:33,138 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 20:09:38] 2026-01-08 19:09:33,138 | INFO     | traces error code: 0
[2026-01-08 20:09:38] 2026-01-08 19:09:33,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 20:09:38] 2026-01-08 19:09:33,506 [wrapper] ==== pilot stdout END ====
[2026-01-08 20:09:38] 2026-01-08 19:09:33,611 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 20:09:38] 2026-01-08 19:09:33,712 [wrapper] pilotpid: 8320
[2026-01-08 20:09:38] 2026-01-08 19:09:33,808 [wrapper] Pilot exit status: 0
[2026-01-08 20:09:38] 2026-01-08 19:09:34,244 [wrapper] pandaids: 6962915998
[2026-01-08 20:09:38] 2026-01-08 19:09:35,210 [wrapper] cleanup supervisor_pilot 14099 8321
[2026-01-08 20:09:38] 2026-01-08 19:09:35,323 [wrapper] Test setup, not cleaning
[2026-01-08 20:09:38] 2026-01-08 19:09:35,430 [wrapper] apfmon messages muted
[2026-01-08 20:09:38] 2026-01-08 19:09:35,490 [wrapper] ==== wrapper stdout END ====
[2026-01-08 20:09:38] 2026-01-08 19:09:35,545 [wrapper] ==== wrapper stderr END ====
[2026-01-08 20:09:38]  *** Error codes and diagnostics ***
[2026-01-08 20:09:38]     "exeErrorCode": 0,
[2026-01-08 20:09:38]     "exeErrorDiag": "",
[2026-01-08 20:09:38]     "pilotErrorCode": 0,
[2026-01-08 20:09:38]     "pilotErrorDiag": "",
[2026-01-08 20:09:38]  *** Listing of results directory ***
[2026-01-08 20:09:38] total 447336
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 20:09:38] -rwx------. 1 boinc boinc     36322 Jan  8 09:02 runpilot2-wrapper.sh
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:04 queuedata.json
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc       100 Jan  8 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 20:09:38] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 13:49 run_atlas
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc       105 Jan  8 13:49 job.xml
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc      6389 Jan  8 13:49 init_data.xml
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc 226549749 Jan  8 13:49 EVNT.47898824._000441.pool.root.1
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:49 start_atlas.sh
[2026-01-08 20:09:38] drwxrwx--x. 2 boinc boinc        68 Jan  8 13:49 shared
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc    592392 Jan  8 13:49 input.tar.gz
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc         0 Jan  8 13:49 boinc_lockfile
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc      2518 Jan  8 13:50 pandaJob.out
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc    989843 Jan  8 13:54 agis_schedconf.cvmfs.json
[2026-01-08 20:09:38] drwx------. 5 boinc boinc      4096 Jan  8 13:54 pilot3
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc 220555307 Jan  8 20:05 HITS.47898826._018586.pool.root.1
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc       531 Jan  8 20:05 boinc_task_state.xml
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc      1016 Jan  8 20:06 memory_monitor_summary.json
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc   1516240 Jan  8 20:06 agis_ddmendpoints.agis.ALL.json
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc    558527 Jan  8 20:06 log.47898826._018586.job.log.tgz.1
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc      7779 Jan  8 20:08 heartbeat.json
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc      8192 Jan  8 20:09 boinc_mmap_file
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc        28 Jan  8 20:09 wrapper_checkpoint.txt
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc        95 Jan  8 20:09 pilot_heartbeat.json
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc      4883 Jan  8 20:09 pilotlog.txt
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc   2976308 Jan  8 20:09 log.47898826._018586.job.log.1
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc       357 Jan  8 20:09 output.list
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc       620 Jan  8 20:09 runtime_log
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc   3553280 Jan  8 20:09 result.tar.gz
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc       657 Jan  8 20:09 YscKDmF9zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeOeKDmwANdUn.diag
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc      8817 Jan  8 20:09 runtime_log.err
[2026-01-08 20:09:38] -rw-r--r--. 1 boinc boinc     20868 Jan  8 20:09 stderr.txt
[2026-01-08 20:09:38] HITS file was successfully produced:
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc 220555307 Jan  8 20:05 shared/HITS.pool.root.1
[2026-01-08 20:09:38]  *** Contents of shared directory: ***
[2026-01-08 20:09:38] total 440696
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc 226549749 Jan  8 13:49 ATLAS.root_0
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:49 start_atlas.sh
[2026-01-08 20:09:38] -rw-r--r--. 2 boinc boinc    592392 Jan  8 13:49 input.tar.gz
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc 220555307 Jan  8 20:05 HITS.pool.root.1
[2026-01-08 20:09:38] -rw-------. 1 boinc boinc   3553280 Jan  8 20:09 result.tar.gz
20:09:40 (4585): run_atlas exited; CPU time 82758.574765
20:09:40 (4585): called boinc_finish(0)

</stderr_txt>
]]>

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