Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:28:35 (1736569): wrapper (7.7.26015): starting
12:28:35 (1736569): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 12:28:35] Arguments: --nthreads 4
[2026-01-13 12:28:35] Threads: 4
[2026-01-13 12:28:35] Checking for CVMFS
[2026-01-13 12:28:35] No cvmfs_config command found, will try listing directly
[2026-01-13 12:28:35] CVMFS is ok
[2026-01-13 12:28:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 12:28:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 12:28:35] Further information can be found at the LHC@home message board.
[2026-01-13 12:28:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 12:28:35] Checking for apptainer binary...
[2026-01-13 12:28:35] which: no apptainer in ((null))
[2026-01-13 12:28:35] apptainer is not installed, using version from CVMFS
[2026-01-13 12:28:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 12:28:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-01-13 12:28:36] apptainer works
[2026-01-13 12:28:36] Set ATHENA_PROC_NUMBER=4
[2026-01-13 12:28:36] Set ATHENA_CORE_NUMBER=4
[2026-01-13 12:28:36] Starting ATLAS job with PandaID=6962915554
[2026-01-13 12:28:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 15:37:12]  *** The last 200 lines of the pilot log: ***
[2026-01-13 15:37:12] 2026-01-13 14:36:26,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 15:37:12] 2026-01-13 14:36:27,019 | INFO     | time since job start (11257s) is within the limit (174528.0s)
[2026-01-13 15:37:12] 2026-01-13 14:36:29,025 | INFO     | time since job start (11259s) is within the limit (174528.0s)
[2026-01-13 15:37:12] 2026-01-13 14:36:29,344 | INFO     | monitor loop #782: job 0:6962915554 is in state 'finished'
[2026-01-13 15:37:12] 2026-01-13 14:36:29,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 15:37:12] 2026-01-13 14:36:31,030 | INFO     | time since job start (11261s) is within the limit (174528.0s)
[2026-01-13 15:37:12] 2026-01-13 14:36:31,847 | INFO     | monitor loop #783: job 0:6962915554 is in state 'finished'
[2026-01-13 15:37:12] 2026-01-13 14:36:31,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,023 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 15:37:12] 2026-01-13 14:36:32,044 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2720.6677187499995
[2026-01-13 15:37:12] 2026-01-13 14:36:32,067 | INFO     | using path: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6962915554/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,068 | INFO     | extracted standard info from prmon json
[2026-01-13 15:37:12] 2026-01-13 14:36:32,068 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 15:37:12] 2026-01-13 14:36:32,068 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 15:37:12] 2026-01-13 14:36:32,069 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 15:37:12] 2026-01-13 14:36:32,069 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 15:37:12] 2026-01-13 14:36:32,072 | INFO     | fitting pss+swap vs Time
[2026-01-13 15:37:12] 2026-01-13 14:36:32,072 | INFO     | sum of square deviations: 1931608310.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | sum of deviations: -30108816028.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | mean x: 1768309344.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | mean y: 2381504.75
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | intersect: 27565785771.81063
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | chi2: 1.4115575497633213
[2026-01-13 15:37:12] 2026-01-13 14:36:32,074 | INFO     | sum of square deviations: 1778377530.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | sum of deviations: -28947028999.000004
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | mean x: 1768309192.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | mean y: 2382661.279329609
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | intersect: 28785527182.91657
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | chi2: 1.4070667683480618
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | current chi2=1.4070667683480618 (change=0.31814369991591707 %)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,076 | INFO     | right removable region: 178
[2026-01-13 15:37:12] 2026-01-13 14:36:32,077 | INFO     | sum of square deviations: 1778377530.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | sum of deviations: -45512246095.00001
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | mean x: 1768309497.0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | mean y: 2396479.094972067
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | intersect: 45256981426.30226
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | chi2: 0.28073499530573737
[2026-01-13 15:37:12] 2026-01-13 14:36:32,078 | INFO     | current chi2=0.28073499530573737 (change=80.11168617582692 %)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,079 | INFO     | sum of square deviations: 1633472487.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | sum of deviations: -38171230466.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | mean x: 1768309649.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | mean y: 2388734.8448275863
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | intersect: 41324514258.06417
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | chi2: 0.26310281480708037
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | current chi2=0.26310281480708037 (change=6.280720534842652 %)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,080 | INFO     | left removable region: 20
[2026-01-13 15:37:12] 2026-01-13 14:36:32,081 | INFO     | sum of square deviations: 1223016419.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | sum of deviations: -17843724269.999996
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | mean x: 1768309771.5
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | mean y: 2367254.1518987343
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | intersect: 25801883502.259552
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | chi2: 0.1338227505401216
[2026-01-13 15:37:12] 2026-01-13 14:36:32,082 | INFO     | current memory leak: -14.59 B/s (using 158 data points, chi2=0.13)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,083 | INFO     | could have reported an average CPU frequency of 2744 MHz (10 samples)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | ..............................
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . Timing measurements:
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . get job = 0 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . initial setup = 1 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . payload setup = 8 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . stage-in = 0 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . payload execution = 11221 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . stage-out = 1 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | . log creation = 0 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,087 | INFO     | ..............................
[2026-01-13 15:37:12] 2026-01-13 14:36:32,178 | INFO     | 
[2026-01-13 15:37:12] 2026-01-13 14:36:32,178 | INFO     | job summary report
[2026-01-13 15:37:12] 2026-01-13 14:36:32,178 | INFO     | --------------------------------------------------
[2026-01-13 15:37:12] 2026-01-13 14:36:32,178 | INFO     | PanDA job id: 6962915554
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | task id: 47898826
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | errors: (none)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | pilot state: finished 
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | transexitcode: 0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | exeerrorcode: 0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | exeerrordiag: 
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | exitcode: 0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | exitmsg: OK
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | cpuconsumptiontime: 43561 s
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | nevents: 400
[2026-01-13 15:37:12] 2026-01-13 14:36:32,179 | INFO     | neventsw: 0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | pid: 1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | pgrp: 1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | corecount: 4
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | event service: False
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | sizes: {0: 2283808, 1: 2284007, 7: 2284269, 12: 2284297, 11233: 2314062, 11235: 2323266, 11244: 2323404}
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | --------------------------------------------------
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | 
[2026-01-13 15:37:12] 2026-01-13 14:36:32,180 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2026-01-13 15:37:12] 2026-01-13 14:36:32,211 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,211 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | job 6962915554 has completed (purged errors)
[2026-01-13 15:37:12] 2026-01-13 14:36:32,213 | INFO     | overall cleanup function is called
[2026-01-13 15:37:12] 2026-01-13 14:36:33,222 | INFO     | --- collectZombieJob: --- 10, [1748238]
[2026-01-13 15:37:12] 2026-01-13 14:36:33,222 | INFO     | zombie collector waiting for pid 1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:33,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 15:37:12] 2026-01-13 14:36:33,222 | INFO     | collected zombie processes
[2026-01-13 15:37:12] 2026-01-13 14:36:33,222 | INFO     | will attempt to kill all subprocesses of pid=1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:33,936 | INFO     | process IDs to be killed: [1748238] (in reverse order)
[2026-01-13 15:37:12] 2026-01-13 14:36:34,190 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 15:37:12] 2026-01-13 14:36:34,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 15:37:12] 2026-01-13 14:36:34,221 | INFO     | did not find any defunct processes belonging to 1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:34,250 | INFO     | did not find any defunct processes belonging to 1748238
[2026-01-13 15:37:12] 2026-01-13 14:36:34,251 | INFO     | ready for new job
[2026-01-13 15:37:12] 2026-01-13 14:36:34,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 15:37:12] 2026-01-13 14:36:34,253 | INFO     | ***************************************
[2026-01-13 15:37:12] 2026-01-13 14:36:34,253 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 15:37:12] 2026-01-13 14:36:34,253 | INFO     | ***************************************
[2026-01-13 15:37:12] 2026-01-13 14:36:34,254 | INFO     | 
[2026-01-13 15:37:12] 2026-01-13 14:36:34,262 | INFO     | architecture information:
[2026-01-13 15:37:12] 2026-01-13 14:36:34,262 | INFO     | executing command: cat /etc/os-release
[2026-01-13 15:37:12] 2026-01-13 14:36:34,288 | INFO     | cat /etc/os-release:
[2026-01-13 15:37:12] NAME="CentOS Linux"
[2026-01-13 15:37:12] VERSION="7 (Core)"
[2026-01-13 15:37:12] ID="centos"
[2026-01-13 15:37:12] ID_LIKE="rhel fedora"
[2026-01-13 15:37:12] VERSION_ID="7"
[2026-01-13 15:37:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 15:37:12] ANSI_COLOR="0;31"
[2026-01-13 15:37:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 15:37:12] HOME_URL="https://www.centos.org/"
[2026-01-13 15:37:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 15:37:12] 
[2026-01-13 15:37:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 15:37:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 15:37:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 15:37:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 15:37:12] 
[2026-01-13 15:37:12] 2026-01-13 14:36:34,289 | INFO     | ***************************************
[2026-01-13 15:37:12] 2026-01-13 14:36:34,792 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2026-01-13 15:37:12] 2026-01-13 14:36:34,815 | INFO     | sufficient remaining disk space (3370434691072 B)
[2026-01-13 15:37:12] 2026-01-13 14:36:34,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 15:37:12] 2026-01-13 14:36:34,816 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 15:37:12] 2026-01-13 14:36:34,816 | INFO     | update_server=False
[2026-01-13 15:37:12] 2026-01-13 14:36:34,816 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 15:37:12] 2026-01-13 14:36:35,355 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 15:37:12] 2026-01-13 14:36:35,356 | INFO     | aborting loop
[2026-01-13 15:37:12] 2026-01-13 14:36:35,531 | INFO     | all data control threads have been joined
[2026-01-13 15:37:12] 2026-01-13 14:36:35,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 15:37:12] 2026-01-13 14:36:35,821 | INFO     | [job] retrieve thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:35,989 | INFO     | all payload control threads have been joined
[2026-01-13 15:37:12] 2026-01-13 14:36:36,048 | INFO     | [payload] failed_post thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,140 | INFO     | [job] validate thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,319 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,361 | INFO     | [job] job monitor thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,375 | INFO     | all job control threads have been joined
[2026-01-13 15:37:12] 2026-01-13 14:36:36,487 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,488 | INFO     | [data] copytool_in thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,536 | INFO     | [data] control thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,569 | INFO     | [payload] validate_post thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,830 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:36,996 | INFO     | [payload] control thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:37,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 15:37:12] 2026-01-13 14:36:37,380 | INFO     | [job] control thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:37,685 | INFO     | [data] copytool_out thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:37,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 15:37:12] 2026-01-13 14:36:38,194 | INFO     | [job] queue monitor thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:41,863 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:36:45,308 | INFO     | job.realtimelogging is not enabled
[2026-01-13 15:37:12] 2026-01-13 14:36:46,313 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 15:37:12] 2026-01-13 14:37:05,015 | INFO     | PID=1740575 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-13 15:37:12] 2026-01-13 14:37:05,015 | INFO     | .. there are 7 such processes running
[2026-01-13 15:37:12] 2026-01-13 14:37:05,016 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 15:37:12] 2026-01-13 14:37:05,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 15:37:12] 2026-01-13 14:37:05,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 15:37:12] 2026-01-13 14:37:06,941 | INFO     | [monitor] cgroup control has ended
[2026-01-13 15:37:12] 2026-01-13 14:37:07,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22487316866880)>', '<ExcThread(monitor, started 22487075088128)>']
[2026-01-13 15:37:12] 2026-01-13 14:37:08,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 15:37:12] 2026-01-13 14:37:08,031 | INFO     | [monitor] control thread has ended
[2026-01-13 15:37:12] 2026-01-13 14:37:12,376 | INFO     | all workflow threads have been joined
[2026-01-13 15:37:12] 2026-01-13 14:37:12,376 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 15:37:12] 2026-01-13 14:37:12,376 | INFO     | traces error code: 0
[2026-01-13 15:37:12] 2026-01-13 14:37:12,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 15:37:12] 2026-01-13 14:37:12,527 [wrapper] ==== pilot stdout END ====
[2026-01-13 15:37:12] 2026-01-13 14:37:12,533 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 15:37:12] 2026-01-13 14:37:12,536 [wrapper] pilotpid: 1740575
[2026-01-13 15:37:12] 2026-01-13 14:37:12,540 [wrapper] Pilot exit status: 0
[2026-01-13 15:37:12] 2026-01-13 14:37:12,554 [wrapper] pandaids: 6962915554
[2026-01-13 15:37:12] 2026-01-13 14:37:12,722 [wrapper] cleanup supervisor_pilot 2097876 1740576
[2026-01-13 15:37:12] 2026-01-13 14:37:12,727 [wrapper] Test setup, not cleaning
[2026-01-13 15:37:12] 2026-01-13 14:37:12,730 [wrapper] apfmon messages muted
[2026-01-13 15:37:12] 2026-01-13 14:37:12,734 [wrapper] ==== wrapper stdout END ====
[2026-01-13 15:37:12] 2026-01-13 14:37:12,737 [wrapper] ==== wrapper stderr END ====
[2026-01-13 15:37:12]  *** Error codes and diagnostics ***
[2026-01-13 15:37:12]     "exeErrorCode": 0,
[2026-01-13 15:37:12]     "exeErrorDiag": "",
[2026-01-13 15:37:12]     "pilotErrorCode": 0,
[2026-01-13 15:37:12]     "pilotErrorDiag": "",
[2026-01-13 15:37:12]  *** Listing of results directory ***
[2026-01-13 15:37:12] total 440104
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-13 15:37:12] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:03 queuedata.json
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc       100 Jan 13 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 15:37:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 12:28 run_atlas
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc       105 Jan 13 12:28 job.xml
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc      6689 Jan 13 12:28 init_data.xml
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc 224056487 Jan 13 12:28 EVNT.47898824._000429.pool.root.1
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc     15847 Jan 13 12:28 start_atlas.sh
[2026-01-13 15:37:12] drwxrwx--x 2 boinc boinc      4096 Jan 13 12:28 shared
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc    592401 Jan 13 12:28 input.tar.gz
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc         0 Jan 13 12:28 boinc_lockfile
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc      2518 Jan 13 12:28 pandaJob.out
[2026-01-13 15:37:12] -rw------- 1 boinc boinc    992677 Jan 13 12:28 agis_schedconf.cvmfs.json
[2026-01-13 15:37:12] drwx------ 5 boinc boinc      4096 Jan 13 12:28 pilot3
[2026-01-13 15:37:12] -rw------- 1 boinc boinc 218799214 Jan 13 15:35 HITS.47898826._018296.pool.root.1
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc       528 Jan 13 15:35 boinc_task_state.xml
[2026-01-13 15:37:12] -rw------- 1 boinc boinc      1038 Jan 13 15:36 memory_monitor_summary.json
[2026-01-13 15:37:12] -rw------- 1 boinc boinc   1516246 Jan 13 15:36 agis_ddmendpoints.agis.ALL.json
[2026-01-13 15:37:12] -rw------- 1 boinc boinc    372673 Jan 13 15:36 log.47898826._018296.job.log.tgz.1
[2026-01-13 15:37:12] -rw------- 1 boinc boinc      7784 Jan 13 15:36 heartbeat.json
[2026-01-13 15:37:12] -rw------- 1 boinc boinc        95 Jan 13 15:37 pilot_heartbeat.json
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc      8192 Jan 13 15:37 boinc_mmap_file
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc        26 Jan 13 15:37 wrapper_checkpoint.txt
[2026-01-13 15:37:12] -rw------- 1 boinc boinc      4907 Jan 13 15:37 pilotlog.txt
[2026-01-13 15:37:12] -rw------- 1 boinc boinc   1575104 Jan 13 15:37 log.47898826._018296.job.log.1
[2026-01-13 15:37:12] -rw------- 1 boinc boinc       357 Jan 13 15:37 output.list
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc       620 Jan 13 15:37 runtime_log
[2026-01-13 15:37:12] -rw------- 1 boinc boinc   1966080 Jan 13 15:37 result.tar.gz
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc      9206 Jan 13 15:37 runtime_log.err
[2026-01-13 15:37:12] -rw------- 1 boinc boinc       664 Jan 13 15:37 hRGNDm68zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQMeKDmVYmlEn.diag
[2026-01-13 15:37:12] -rw-r--r-- 1 boinc boinc     21090 Jan 13 15:37 stderr.txt
[2026-01-13 15:37:12] HITS file was successfully produced:
[2026-01-13 15:37:12] -rw------- 1 boinc boinc 218799214 Jan 13 15:35 shared/HITS.pool.root.1
[2026-01-13 15:37:12]  *** Contents of shared directory: ***
[2026-01-13 15:37:12] total 435004
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc 224056487 Jan 13 12:28 ATLAS.root_0
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc     15847 Jan 13 12:28 start_atlas.sh
[2026-01-13 15:37:12] -rw-r--r-- 2 boinc boinc    592401 Jan 13 12:28 input.tar.gz
[2026-01-13 15:37:12] -rw------- 1 boinc boinc 218799214 Jan 13 15:35 HITS.pool.root.1
[2026-01-13 15:37:12] -rw------- 1 boinc boinc   1966080 Jan 13 15:37 result.tar.gz
15:37:14 (1736569): run_atlas exited; CPU time 44257.609275
15:37:14 (1736569): called boinc_finish(0)

</stderr_txt>
]]>

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