Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:46:06 (4091022): wrapper (7.7.26015): starting
14:46:06 (4091022): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 14:46:06] Arguments: --nthreads 4
[2026-01-08 14:46:06] Threads: 4
[2026-01-08 14:46:06] Checking for CVMFS
[2026-01-08 14:46:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 14:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 14:46:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 14:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 14:46:07] 2.9.2.0 3794984 716 71808 154909 1 57 28559082 36864001 0 130560 0 488141 99.986 31611 25410 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 14:46:07] CVMFS is ok
[2026-01-08 14:46:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 14:46:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 14:46:07] Further information can be found at the LHC@home message board.
[2026-01-08 14:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 14:46:07] Checking for apptainer binary...
[2026-01-08 14:46:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 14:46:07] Running /usr/bin/apptainer --version
[2026-01-08 14:46:07] apptainer version 1.4.1-1.1
[2026-01-08 14:46:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 14:46:07] thA365
[2026-01-08 14:46:07] apptainer works
[2026-01-08 14:46:07] Set ATHENA_PROC_NUMBER=4
[2026-01-08 14:46:07] Set ATHENA_CORE_NUMBER=4
[2026-01-08 14:46:07] Starting ATLAS job with PandaID=6962915487
[2026-01-08 14:46:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:13:00 (4130395): wrapper (7.7.26015): starting
16:13:00 (4130395): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 16:13:00] Arguments: --nthreads 4
[2026-01-08 16:13:00] Threads: 4
[2026-01-08 16:13:00] This job has been restarted, cleaning up previous attempt
[2026-01-08 16:13:00] Checking for CVMFS
[2026-01-08 16:13:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:13:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:13:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:13:00] 2.9.2.0 3794984 802 72188 154911 4 1 28566278 36864001 0 130560 0 542508 99.987 34365 25455 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 16:13:00] CVMFS is ok
[2026-01-08 16:13:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:13:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:13:00] Further information can be found at the LHC@home message board.
[2026-01-08 16:13:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:13:00] Checking for apptainer binary...
[2026-01-08 16:13:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:13:00] Running /usr/bin/apptainer --version
[2026-01-08 16:13:00] apptainer version 1.4.1-1.1
[2026-01-08 16:13:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:13:00] thA365
[2026-01-08 16:13:00] apptainer works
[2026-01-08 16:13:00] Set ATHENA_PROC_NUMBER=4
[2026-01-08 16:13:00] Set ATHENA_CORE_NUMBER=4
[2026-01-08 16:13:00] Starting ATLAS job with PandaID=6962915487
[2026-01-08 16:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:51:21]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:51:21]  is_altstaged=None
[2026-01-08 17:51:21]  is_tar=False
[2026-01-08 17:51:21]  lfn=log.47898826._018229.job.log.tgz.1
[2026-01-08 17:51:21]  mtime=0
[2026-01-08 17:51:21]  protocol_id=None
[2026-01-08 17:51:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 17:51:21]  replicas=None
[2026-01-08 17:51:21]  scope=mc23_13p6TeV
[2026-01-08 17:51:21]  status=None
[2026-01-08 17:51:21]  status_code=0
[2026-01-08 17:51:21]  storage_token=
[2026-01-08 17:51:21]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6962915487/log.47898826._018229.job.log.tgz.1
[2026-01-08 17:51:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/d7/log.47898826._018229.job.log.tgz.1
[2026-01-08 17:51:21]  workdir=None
[2026-01-08 17:51:21] ]
[2026-01-08 17:51:21] 2026-01-08 16:50:12,436 | INFO     | transferring file log.47898826._018229.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6962915487/log.47898826._018229.job.log.tgz.1 to /local/data/boinc/
[2026-01-08 17:51:21] 2026-01-08 16:50:12,436 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6962915487/log.47898826._018229.job.log.tgz.1 /local/data/boinc/slots/0/log.47898826._0182
[2026-01-08 17:51:21] 2026-01-08 16:50:12,454 | INFO     | adding to output.list: log.47898826._018229.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/d7/log.47898826._018229.job.log.tg
[2026-01-08 17:51:21] 2026-01-08 16:50:12,455 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 17:51:21] 2026-01-08 16:50:12,455 | INFO     | summary of transferred files:
[2026-01-08 17:51:21] 2026-01-08 16:50:12,455 | INFO     |  -- lfn=log.47898826._018229.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 17:51:21] 2026-01-08 16:50:12,455 | INFO     | stage-out finished correctly
[2026-01-08 17:51:21] 2026-01-08 16:50:12,563 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 17:51:21] 2026-01-08 16:50:13,273 | INFO     | time since job start (5825s) is within the limit (174528.0s)
[2026-01-08 17:51:21] 2026-01-08 16:50:13,782 | INFO     | monitor loop #447: job 0:6962915487 is in state 'finished'
[2026-01-08 17:51:21] 2026-01-08 16:50:13,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:51:21] 2026-01-08 16:50:14,157 | INFO     | job 6962915487 has state=finished
[2026-01-08 17:51:21] 2026-01-08 16:50:14,157 | INFO     | preparing for final server update for job 6962915487 in state='finished'
[2026-01-08 17:51:21] 2026-01-08 16:50:14,158 | INFO     | this job has now completed (state=finished)
[2026-01-08 17:51:21] 2026-01-08 16:50:14,158 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 17:51:21] 2026-01-08 16:50:14,158 | INFO     | log transfer has been attempted: DONE
[2026-01-08 17:51:21] 2026-01-08 16:50:14,158 | INFO     | job 6962915487 has finished - writing final server update
[2026-01-08 17:51:21] 2026-01-08 16:50:14,158 | INFO     | total number of processed events: 400 (read)
[2026-01-08 17:51:21] 2026-01-08 16:50:14,159 | INFO     | executing command: lscpu
[2026-01-08 17:51:21] 2026-01-08 16:50:14,179 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 17:51:21] 2026-01-08 16:50:15,278 | INFO     | time since job start (5827s) is within the limit (174528.0s)
[2026-01-08 17:51:21] 2026-01-08 16:50:16,285 | INFO     | monitor loop #448: job 0:6962915487 is in state 'finished'
[2026-01-08 17:51:21] 2026-01-08 16:50:16,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,282 | INFO     | time since job start (5829s) is within the limit (174528.0s)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,497 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 17:51:21] 2026-01-08 16:50:17,498 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3346.1820624999996
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6962915487/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | INFO     | extracted standard info from prmon json
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:51:21] 2026-01-08 16:50:17,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:51:21] 2026-01-08 16:50:17,501 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:51:21] 2026-01-08 16:50:17,501 | INFO     | sum of square deviations: 218571540.0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | sum of deviations: -4024270223.0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | mean x: 1767888200.0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | mean y: 2454980.04494382
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | intersect: 32552254651.370262
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | chi2: 0.02001696291389857
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | current memory leak: -18.41 B/s (using 89 data points, chi2=0.02)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | could have reported an average CPU frequency of 3567 MHz (7 samples)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | ..............................
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . Timing measurements:
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . get job = 0 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . initial setup = 0 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . payload setup = 4 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . stage-in = 0 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . payload execution = 5799 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . stage-out = 1 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | . log creation = 0 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,502 | INFO     | ..............................
[2026-01-08 17:51:21] 2026-01-08 16:50:17,541 | INFO     | 
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | job summary report
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | --------------------------------------------------
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | PanDA job id: 6962915487
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | task id: 47898826
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | errors: (none)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | pilot state: finished 
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | transexitcode: 0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | exeerrorcode: 0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | exeerrordiag: 
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | exitcode: 0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | exitmsg: OK
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | cpuconsumptiontime: 22340 s
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | nevents: 400
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | neventsw: 0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | pid: 4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | pgrp: 4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | corecount: 4
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | event service: False
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | sizes: {0: 2283971, 3: 2284233, 11: 2284261, 5807: 2311091, 5810: 2320151, 5815: 2320289}
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | --------------------------------------------------
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | 
[2026-01-08 17:51:21] 2026-01-08 16:50:17,542 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,560 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:51:21] 2026-01-08 16:50:17,561 | INFO     | job 6962915487 has completed (purged errors)
[2026-01-08 17:51:21] 2026-01-08 16:50:17,561 | INFO     | overall cleanup function is called
[2026-01-08 17:51:21] 2026-01-08 16:50:18,567 | INFO     | --- collectZombieJob: --- 10, [4140811]
[2026-01-08 17:51:21] 2026-01-08 16:50:18,567 | INFO     | zombie collector waiting for pid 4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:18,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:51:21] 2026-01-08 16:50:18,567 | INFO     | collected zombie processes
[2026-01-08 17:51:21] 2026-01-08 16:50:18,568 | INFO     | will attempt to kill all subprocesses of pid=4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:18,622 | INFO     | process IDs to be killed: [4140811] (in reverse order)
[2026-01-08 17:51:21] 2026-01-08 16:50:18,656 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:51:21] 2026-01-08 16:50:18,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:51:21] 2026-01-08 16:50:18,659 | INFO     | did not find any defunct processes belonging to 4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:18,660 | INFO     | did not find any defunct processes belonging to 4140811
[2026-01-08 17:51:21] 2026-01-08 16:50:18,660 | INFO     | ready for new job
[2026-01-08 17:51:21] 2026-01-08 16:50:18,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:51:21] 2026-01-08 16:50:18,661 | INFO     | ***************************************
[2026-01-08 17:51:21] 2026-01-08 16:50:18,661 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:51:21] 2026-01-08 16:50:18,661 | INFO     | ***************************************
[2026-01-08 17:51:21] 2026-01-08 16:50:18,661 | INFO     | 
[2026-01-08 17:51:21] 2026-01-08 16:50:18,662 | INFO     | architecture information:
[2026-01-08 17:51:21] 2026-01-08 16:50:18,662 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:51:21] 2026-01-08 16:50:18,675 | INFO     | cat /etc/os-release:
[2026-01-08 17:51:21] NAME="CentOS Linux"
[2026-01-08 17:51:21] VERSION="7 (Core)"
[2026-01-08 17:51:21] ID="centos"
[2026-01-08 17:51:21] ID_LIKE="rhel fedora"
[2026-01-08 17:51:21] VERSION_ID="7"
[2026-01-08 17:51:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:51:21] ANSI_COLOR="0;31"
[2026-01-08 17:51:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:51:21] HOME_URL="https://www.centos.org/"
[2026-01-08 17:51:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:51:21] 
[2026-01-08 17:51:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:51:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:51:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:51:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:51:21] 
[2026-01-08 17:51:21] 2026-01-08 16:50:18,675 | INFO     | ***************************************
[2026-01-08 17:51:21] 2026-01-08 16:50:19,178 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 17:51:21] 2026-01-08 16:50:19,193 | INFO     | sufficient remaining disk space (19820183552 B)
[2026-01-08 17:51:21] 2026-01-08 16:50:19,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:51:21] 2026-01-08 16:50:19,193 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:51:21] 2026-01-08 16:50:19,193 | INFO     | update_server=False
[2026-01-08 17:51:21] 2026-01-08 16:50:19,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:51:21] 2026-01-08 16:50:19,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:51:21] 2026-01-08 16:50:19,740 | INFO     | all data control threads have been joined
[2026-01-08 17:51:21] 2026-01-08 16:50:19,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:51:21] 2026-01-08 16:50:19,795 | INFO     | aborting loop
[2026-01-08 17:51:21] 2026-01-08 16:50:20,199 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:20,199 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:20,257 | INFO     | all payload control threads have been joined
[2026-01-08 17:51:21] 2026-01-08 16:50:20,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:51:21] 2026-01-08 16:50:20,746 | INFO     | [data] control thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:20,800 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:20,851 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:20,880 | INFO     | all job control threads have been joined
[2026-01-08 17:51:21] 2026-01-08 16:50:21,008 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,009 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,075 | INFO     | [job] validate thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,166 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,192 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,262 | INFO     | [payload] control thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,564 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,749 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:21,886 | INFO     | [job] control thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:22,513 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:50:23,195 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:51:21] 2026-01-08 16:51:15,244 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:51:21] 2026-01-08 16:51:16,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340206470976)>', '<ExcThread(monitor, started 140339037849344)>']
[2026-01-08 17:51:21] 2026-01-08 16:51:17,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:51:21] 2026-01-08 16:51:17,499 | INFO     | [monitor] control thread has ended
[2026-01-08 17:51:21] 2026-01-08 16:51:21,568 | INFO     | all workflow threads have been joined
[2026-01-08 17:51:21] 2026-01-08 16:51:21,569 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:51:21] 2026-01-08 16:51:21,569 | INFO     | traces error code: 0
[2026-01-08 17:51:21] 2026-01-08 16:51:21,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:51:21] 2026-01-08 16:51:21,638 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:51:21] 2026-01-08 16:51:21,642 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:51:21] 2026-01-08 16:51:21,646 [wrapper] pilotpid: 4134208
[2026-01-08 17:51:21] 2026-01-08 16:51:21,650 [wrapper] Pilot exit status: 0
[2026-01-08 17:51:21] 2026-01-08 16:51:21,660 [wrapper] pandaids: 6962915487 6962915487
[2026-01-08 17:51:21] 2026-01-08 16:51:21,685 [wrapper] cleanup supervisor_pilot 4169381 4134209
[2026-01-08 17:51:21] 2026-01-08 16:51:21,689 [wrapper] Test setup, not cleaning
[2026-01-08 17:51:21] 2026-01-08 16:51:21,693 [wrapper] apfmon messages muted
[2026-01-08 17:51:21] 2026-01-08 16:51:21,697 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:51:21] 2026-01-08 16:51:21,700 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:51:21]  *** Error codes and diagnostics ***
[2026-01-08 17:51:21]     "exeErrorCode": 0,
[2026-01-08 17:51:21]     "exeErrorDiag": "",
[2026-01-08 17:51:21]     "pilotErrorCode": 0,
[2026-01-08 17:51:21]     "pilotErrorDiag": "",
[2026-01-08 17:51:21]  *** Listing of results directory ***
[2026-01-08 17:51:21] total 660668
[2026-01-08 17:51:21] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 17:51:21] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:03 queuedata.json
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc       100 Jan  8 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:51:21] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 14:46 run_atlas
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc       105 Jan  8 14:46 job.xml
[2026-01-08 17:51:21] -rw-r--r-- 3 boinc boinc 225169635 Jan  8 14:46 EVNT.47898824._000402.pool.root.1
[2026-01-08 17:51:21] -rw-r--r-- 3 boinc boinc 225169635 Jan  8 14:46 ATLAS.root_0
[2026-01-08 17:51:21] -rw-r--r-- 2 boinc boinc    592404 Jan  8 14:46 input.tar.gz
[2026-01-08 17:51:21] -rw-r--r-- 2 boinc boinc     15847 Jan  8 14:46 start_atlas.sh
[2026-01-08 17:51:21] drwxrwx--x 2 boinc boinc      4096 Jan  8 14:46 shared
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc         0 Jan  8 14:46 boinc_setup_complete
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc         0 Jan  8 14:46 boinc_lockfile
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc      6374 Jan  8 16:13 init_data.xml
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc      2518 Jan  8 16:13 pandaJob.out
[2026-01-08 17:51:21] -rw------- 1 boinc boinc    989835 Jan  8 16:13 agis_schedconf.cvmfs.json
[2026-01-08 17:51:21] -rw------- 1 boinc boinc        97 Jan  8 17:49 pilot_heartbeat.json
[2026-01-08 17:51:21] -rw------- 1 boinc boinc 220018708 Jan  8 17:49 HITS.47898826._018229.pool.root.1
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc       529 Jan  8 17:49 boinc_task_state.xml
[2026-01-08 17:51:21] -rw------- 1 boinc boinc      1023 Jan  8 17:50 memory_monitor_summary.json
[2026-01-08 17:51:21] -rw------- 1 boinc boinc   1516240 Jan  8 17:50 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:51:21] -rw------- 1 boinc boinc    275031 Jan  8 17:50 log.47898826._018229.job.log.tgz.1
[2026-01-08 17:51:21] -rw------- 1 boinc boinc      7761 Jan  8 17:50 heartbeat.json
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc      8192 Jan  8 17:50 boinc_mmap_file
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc        27 Jan  8 17:50 wrapper_checkpoint.txt
[2026-01-08 17:51:21] -rw------- 1 boinc boinc      4555 Jan  8 17:51 pilotlog.txt
[2026-01-08 17:51:21] -rw------- 1 boinc boinc    846437 Jan  8 17:51 log.47898826._018229.job.log.1
[2026-01-08 17:51:21] -rw------- 1 boinc boinc       357 Jan  8 17:51 output.list
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc       620 Jan  8 17:51 runtime_log
[2026-01-08 17:51:21] -rw------- 1 boinc boinc   1136640 Jan  8 17:51 result.tar.gz
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc      8982 Jan  8 17:51 runtime_log.err
[2026-01-08 17:51:21] -rw------- 1 boinc boinc       784 Jan  8 17:51 Q8bMDmv8zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMLeKDmgBd9Dn.diag
[2026-01-08 17:51:21] -rw-r--r-- 1 boinc boinc     23566 Jan  8 17:51 stderr.txt
[2026-01-08 17:51:21] HITS file was successfully produced:
[2026-01-08 17:51:21] -rw------- 1 boinc boinc 220018708 Jan  8 17:49 shared/HITS.pool.root.1
[2026-01-08 17:51:21]  *** Contents of shared directory: ***
[2026-01-08 17:51:21] total 436476
[2026-01-08 17:51:21] -rw-r--r-- 3 boinc boinc 225169635 Jan  8 14:46 ATLAS.root_0
[2026-01-08 17:51:21] -rw-r--r-- 2 boinc boinc    592404 Jan  8 14:46 input.tar.gz
[2026-01-08 17:51:21] -rw-r--r-- 2 boinc boinc     15847 Jan  8 14:46 start_atlas.sh
[2026-01-08 17:51:21] -rw------- 1 boinc boinc 220018708 Jan  8 17:49 HITS.pool.root.1
[2026-01-08 17:51:21] -rw------- 1 boinc boinc   1136640 Jan  8 17:51 result.tar.gz
17:51:23 (4130395): run_atlas exited; CPU time 22367.857683
17:51:23 (4130395): called boinc_finish(0)

</stderr_txt>
]]>

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