Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:22:08 (2868927): wrapper (7.7.26015): starting
06:22:08 (2868927): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 06:22:08] Arguments: --nthreads 9
[2026-01-08 06:22:08] Threads: 9
[2026-01-08 06:22:08] Checking for CVMFS
[2026-01-08 06:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 06:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 06:22:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 06:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 06:22:11] 2.13.3.0 9955 91859 334676 154905 2 86 20600093 32935937 22886 16776704 0 424061888 99.711 316669283 33210 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 06:22:11] CVMFS is ok
[2026-01-08 06:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 06:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 06:22:11] Further information can be found at the LHC@home message board.
[2026-01-08 06:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 06:22:11] Checking for apptainer binary...
[2026-01-08 06:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 06:22:11] Running /usr/bin/apptainer --version
[2026-01-08 06:22:11] apptainer version 1.4.5-2.el9
[2026-01-08 06:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 06:22:32] c-5-1.aglt2.org
[2026-01-08 06:22:32] apptainer works
[2026-01-08 06:22:32] Set ATHENA_PROC_NUMBER=9
[2026-01-08 06:22:32] Set ATHENA_CORE_NUMBER=9
[2026-01-08 06:22:32] Starting ATLAS job with PandaID=6962915061
[2026-01-08 06:22:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:00:08 (2868927): BOINC client no longer exists - exiting
09:00:08 (2868927): timer handler: client dead, exiting
09:13:31 (3778208): wrapper (7.7.26015): starting
09:13:31 (3778208): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:13:31] Arguments: --nthreads 8
[2026-01-08 09:13:31] Threads: 8
[2026-01-08 09:13:31] This job has been restarted, cleaning up previous attempt
[2026-01-08 09:13:31] Checking for CVMFS
[2026-01-08 09:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:13:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:13:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:13:33] 2.13.3.0 9955 92030 334228 154909 3 220 21763672 32935937 23006 16776704 0 424676437 99.712 316673651 33210 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 09:13:33] CVMFS is ok
[2026-01-08 09:13:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:13:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:13:33] Further information can be found at the LHC@home message board.
[2026-01-08 09:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:13:33] Checking for apptainer binary...
[2026-01-08 09:13:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:13:33] Running /usr/bin/apptainer --version
[2026-01-08 09:13:33] apptainer version 1.4.5-2.el9
[2026-01-08 09:13:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:13:34] c-5-1.aglt2.org
[2026-01-08 09:13:34] apptainer works
[2026-01-08 09:13:34] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:13:34] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:13:34] Starting ATLAS job with PandaID=6962915061
[2026-01-08 09:13:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 22:54:04]  *** The last 200 lines of the pilot log: ***
[2026-01-08 22:54:04] 2026-01-09 03:53:30,588 | INFO     | monitor loop #2731: job 0:6962915061 is in state 'finished'
[2026-01-08 22:54:04] 2026-01-09 03:53:30,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,770 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 22:54:04] 2026-01-09 03:53:30,782 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0408249999996
[2026-01-08 22:54:04] 2026-01-09 03:53:30,798 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962915061/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,799 | INFO     | extracted standard info from prmon json
[2026-01-08 22:54:04] 2026-01-09 03:53:30,799 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 22:54:04] 2026-01-09 03:53:30,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 22:54:04] 2026-01-09 03:53:30,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 22:54:04] 2026-01-09 03:53:30,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 22:54:04] 2026-01-09 03:53:30,827 | INFO     | fitting pss+swap vs Time
[2026-01-08 22:54:04] 2026-01-09 03:53:30,828 | INFO     | sum of square deviations: 161153059784.55087
[2026-01-08 22:54:04] 2026-01-09 03:53:30,858 | INFO     | sum of deviations: 297704987430.93787
[2026-01-08 22:54:04] 2026-01-09 03:53:30,859 | INFO     | mean x: 1767906245.4763682
[2026-01-08 22:54:04] 2026-01-09 03:53:30,859 | INFO     | mean y: 2517306.1019900497
[2026-01-08 22:54:04] 2026-01-09 03:53:30,859 | INFO     | intersect: -3263412036.4265375
[2026-01-08 22:54:04] 2026-01-09 03:53:30,860 | INFO     | chi2: 2.999795526625857
[2026-01-08 22:54:04] 2026-01-09 03:53:30,861 | INFO     | sum of square deviations: 158165268800.71832
[2026-01-08 22:54:04] 2026-01-09 03:53:30,896 | INFO     | sum of deviations: 350992601126.79846
[2026-01-08 22:54:04] 2026-01-09 03:53:30,896 | INFO     | mean x: 1767906092.9812264
[2026-01-08 22:54:04] 2026-01-09 03:53:30,896 | INFO     | mean y: 2520010.919899875
[2026-01-08 22:54:04] 2026-01-09 03:53:30,897 | INFO     | intersect: -3920730414.5905714
[2026-01-08 22:54:04] 2026-01-09 03:53:30,898 | INFO     | chi2: 2.123106313607267
[2026-01-08 22:54:04] 2026-01-09 03:53:30,898 | INFO     | current chi2=2.123106313607267 (change=29.22496567640001 %)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,899 | INFO     | sum of square deviations: 155214543706.29037
[2026-01-08 22:54:04] 2026-01-09 03:53:30,932 | INFO     | sum of deviations: 346855082142.04456
[2026-01-08 22:54:04] 2026-01-09 03:53:30,933 | INFO     | mean x: 1767905940.4836273
[2026-01-08 22:54:04] 2026-01-09 03:53:30,933 | INFO     | mean y: 2519797.234256927
[2026-01-08 22:54:04] 2026-01-09 03:53:30,933 | INFO     | intersect: -3948187047.391191
[2026-01-08 22:54:04] 2026-01-09 03:53:30,934 | INFO     | chi2: 2.1231384002866203
[2026-01-08 22:54:04] 2026-01-09 03:53:30,934 | INFO     | current chi2=2.1231384002866203 (change=-0.0015113081783711343 %)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,939 | INFO     | right removable region: 793
[2026-01-08 22:54:04] 2026-01-09 03:53:30,940 | INFO     | sum of square deviations: 158164887672.71835
[2026-01-08 22:54:04] 2026-01-09 03:53:30,962 | INFO     | sum of deviations: 128088492486.18777
[2026-01-08 22:54:04] 2026-01-09 03:53:30,963 | INFO     | mean x: 1767906397.9812264
[2026-01-08 22:54:04] 2026-01-09 03:53:30,963 | INFO     | mean y: 2525946.0125156445
[2026-01-08 22:54:04] 2026-01-09 03:53:30,963 | INFO     | intersect: -1429198052.3168647
[2026-01-08 22:54:04] 2026-01-09 03:53:30,964 | INFO     | chi2: 1.0243920421369825
[2026-01-08 22:54:04] 2026-01-09 03:53:30,964 | INFO     | current chi2=1.0243920421369825 (change=65.85127109349318 %)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,966 | INFO     | sum of square deviations: 155213830430.37427
[2026-01-08 22:54:04] 2026-01-09 03:53:30,996 | INFO     | sum of deviations: 88674345632.41682
[2026-01-08 22:54:04] 2026-01-09 03:53:30,997 | INFO     | mean x: 1767906550.4874055
[2026-01-08 22:54:04] 2026-01-09 03:53:30,997 | INFO     | mean y: 2527982.391687657
[2026-01-08 22:54:04] 2026-01-09 03:53:30,997 | INFO     | intersect: -1007484824.2573746
[2026-01-08 22:54:04] 2026-01-09 03:53:30,998 | INFO     | chi2: 0.9506745161794558
[2026-01-08 22:54:04] 2026-01-09 03:53:30,998 | INFO     | current chi2=0.9506745161794558 (change=7.196222044418149 %)
[2026-01-08 22:54:04] 2026-01-09 03:53:30,998 | INFO     | left removable region: 20
[2026-01-08 22:54:04] 2026-01-09 03:53:30,999 | INFO     | sum of square deviations: 143221210622.99844
[2026-01-08 22:54:04] 2026-01-09 03:53:31,018 | INFO     | sum of deviations: 103166172094.03496
[2026-01-08 22:54:04] 2026-01-09 03:53:31,018 | INFO     | mean x: 1767906519.9987063
[2026-01-08 22:54:04] 2026-01-09 03:53:31,018 | INFO     | mean y: 2532580.0349288485
[2026-01-08 22:54:04] 2026-01-09 03:53:31,025 | INFO     | intersect: -1270939048.189565
[2026-01-08 22:54:04] 2026-01-09 03:53:31,027 | INFO     | chi2: 0.010648641256236605
[2026-01-08 22:54:04] 2026-01-09 03:53:31,027 | INFO     | current memory leak: 0.72 B/s (using 773 data points, chi2=0.01)
[2026-01-08 22:54:04] 2026-01-09 03:53:31,028 | INFO     | could have reported an average CPU frequency of 2600 MHz (30 samples)
[2026-01-08 22:54:04] 2026-01-09 03:53:31,028 | INFO     | ..............................
[2026-01-08 22:54:04] 2026-01-09 03:53:31,028 | INFO     | . Timing measurements:
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . get job = 0 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . initial setup = 2 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . payload setup = 31 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . stage-in = 0 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . payload execution = 49057 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . stage-out = 3 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | . log creation = 0 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,033 | INFO     | ..............................
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | 
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | job summary report
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | --------------------------------------------------
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | PanDA job id: 6962915061
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | task id: 47898826
[2026-01-08 22:54:04] 2026-01-09 03:53:31,377 | INFO     | errors: (none)
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | pilot state: finished 
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | transexitcode: 0
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | exeerrorcode: 0
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | exeerrordiag: 
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | exitcode: 0
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | exitmsg: OK
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | cpuconsumptiontime: 69877 s
[2026-01-08 22:54:04] 2026-01-09 03:53:31,378 | INFO     | nevents: 400
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | neventsw: 0
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | pid: 3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | pgrp: 3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | corecount: 8
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | event service: False
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | sizes: {0: 2283795, 1: 2283994, 2: 2283994, 12: 2284022, 19: 2284312, 23: 2284340, 49093: 2330418, 49097: 2339472, 49120: 2339610}
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | --------------------------------------------------
[2026-01-08 22:54:04] 2026-01-09 03:53:31,379 | INFO     | 
[2026-01-08 22:54:04] 2026-01-09 03:53:31,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 22:54:04] 2026-01-09 03:53:31,439 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,440 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | job 6962915061 has completed (purged errors)
[2026-01-08 22:54:04] 2026-01-09 03:53:31,442 | INFO     | overall cleanup function is called
[2026-01-08 22:54:04] 2026-01-09 03:53:32,463 | INFO     | --- collectZombieJob: --- 10, [3818786]
[2026-01-08 22:54:04] 2026-01-09 03:53:32,463 | INFO     | zombie collector waiting for pid 3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:32,463 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 22:54:04] 2026-01-09 03:53:32,463 | INFO     | collected zombie processes
[2026-01-08 22:54:04] 2026-01-09 03:53:32,463 | INFO     | will attempt to kill all subprocesses of pid=3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:32,964 | INFO     | process IDs to be killed: [3818786] (in reverse order)
[2026-01-08 22:54:04] 2026-01-09 03:53:33,124 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 22:54:04] 2026-01-09 03:53:33,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 22:54:04] 2026-01-09 03:53:33,154 | INFO     | did not find any defunct processes belonging to 3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:33,176 | INFO     | did not find any defunct processes belonging to 3818786
[2026-01-08 22:54:04] 2026-01-09 03:53:33,176 | INFO     | ready for new job
[2026-01-08 22:54:04] 2026-01-09 03:53:33,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 22:54:04] 2026-01-09 03:53:33,179 | INFO     | ***************************************
[2026-01-08 22:54:04] 2026-01-09 03:53:33,179 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 22:54:04] 2026-01-09 03:53:33,180 | INFO     | ***************************************
[2026-01-08 22:54:04] 2026-01-09 03:53:33,180 | INFO     | 
[2026-01-08 22:54:04] 2026-01-09 03:53:33,181 | INFO     | architecture information:
[2026-01-08 22:54:04] 2026-01-09 03:53:33,182 | INFO     | executing command: cat /etc/os-release
[2026-01-08 22:54:04] 2026-01-09 03:53:33,252 | INFO     | cat /etc/os-release:
[2026-01-08 22:54:04] NAME="CentOS Linux"
[2026-01-08 22:54:04] VERSION="7 (Core)"
[2026-01-08 22:54:04] ID="centos"
[2026-01-08 22:54:04] ID_LIKE="rhel fedora"
[2026-01-08 22:54:04] VERSION_ID="7"
[2026-01-08 22:54:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 22:54:04] ANSI_COLOR="0;31"
[2026-01-08 22:54:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 22:54:04] HOME_URL="https://www.centos.org/"
[2026-01-08 22:54:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 22:54:04] 
[2026-01-08 22:54:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 22:54:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 22:54:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 22:54:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 22:54:04] 
[2026-01-08 22:54:04] 2026-01-09 03:53:33,252 | INFO     | ***************************************
[2026-01-08 22:54:04] 2026-01-09 03:53:33,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 22:54:04] 2026-01-09 03:53:33,816 | INFO     | sufficient remaining disk space (76044828672 B)
[2026-01-08 22:54:04] 2026-01-09 03:53:33,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 22:54:04] 2026-01-09 03:53:33,817 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 22:54:04] 2026-01-09 03:53:33,817 | INFO     | update_server=False
[2026-01-08 22:54:04] 2026-01-09 03:53:33,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 22:54:04] 2026-01-09 03:53:33,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 22:54:04] 2026-01-09 03:53:34,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:54:04] 2026-01-09 03:53:34,107 | INFO     | aborting loop
[2026-01-08 22:54:04] 2026-01-09 03:53:34,329 | INFO     | all data control threads have been joined
[2026-01-08 22:54:04] 2026-01-09 03:53:34,823 | INFO     | [job] retrieve thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,102 | INFO     | all payload control threads have been joined
[2026-01-08 22:54:04] 2026-01-09 03:53:35,113 | INFO     | [job] job monitor thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,274 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,333 | INFO     | all job control threads have been joined
[2026-01-08 22:54:04] 2026-01-09 03:53:35,335 | INFO     | [data] control thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,373 | INFO     | [payload] failed_post thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,697 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,697 | INFO     | [data] copytool_in thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,739 | INFO     | [job] validate thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,825 | INFO     | [data] copytool_out thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,952 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:35,961 | INFO     | [payload] validate_post thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:36,108 | INFO     | [payload] control thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:36,126 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:36,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:54:04] 2026-01-09 03:53:36,345 | INFO     | [job] control thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:36,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 22:54:04] 2026-01-09 03:53:37,178 | INFO     | [job] queue monitor thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:37,226 | INFO     | [monitor] cgroup control has ended
[2026-01-08 22:54:04] 2026-01-09 03:53:40,883 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 22:54:04] 2026-01-09 03:53:42,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881835005760)>', '<ExcThread(monitor, started 139880952743680)>']
[2026-01-08 22:54:04] 2026-01-09 03:53:47,487 | INFO     | all workflow threads have been joined
[2026-01-08 22:54:04] 2026-01-09 03:53:47,487 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 22:54:04] 2026-01-09 03:53:47,487 | INFO     | traces error code: 0
[2026-01-08 22:54:04] 2026-01-09 03:53:47,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 22:54:04] 2026-01-09 03:54:03,497 | INFO     | PID=3789465 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 22:54:04] 2026-01-09 03:54:03,498 | INFO     | .. there are 33 such processes running
[2026-01-08 22:54:04] 2026-01-09 03:54:03,498 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 22:54:04] 2026-01-09 03:54:03,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 22:54:04] 2026-01-09 03:54:03,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 22:54:04] 2026-01-09 03:54:03,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 22:54:04] 2026-01-09 03:54:03,499 | INFO     | [monitor] control thread has ended
[2026-01-08 22:54:04] 2026-01-09 03:54:03,703 [wrapper] ==== pilot stdout END ====
[2026-01-08 22:54:04] 2026-01-09 03:54:03,732 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 22:54:04] 2026-01-09 03:54:03,762 [wrapper] pilotpid: 3789465
[2026-01-08 22:54:04] 2026-01-09 03:54:03,786 [wrapper] Pilot exit status: 0
[2026-01-08 22:54:04] 2026-01-09 03:54:03,890 [wrapper] pandaids: 6962915061 6962915061
[2026-01-08 22:54:04] 2026-01-09 03:54:04,234 [wrapper] cleanup supervisor_pilot 3627198 3789466
[2026-01-08 22:54:04] 2026-01-09 03:54:04,240 [wrapper] Test setup, not cleaning
[2026-01-08 22:54:04] 2026-01-09 03:54:04,246 [wrapper] apfmon messages muted
[2026-01-08 22:54:04] 2026-01-09 03:54:04,250 [wrapper] ==== wrapper stdout END ====
[2026-01-08 22:54:04] 2026-01-09 03:54:04,273 [wrapper] ==== wrapper stderr END ====
[2026-01-08 22:54:04]  *** Error codes and diagnostics ***
[2026-01-08 22:54:04]     "exeErrorCode": 0,
[2026-01-08 22:54:04]     "exeErrorDiag": "",
[2026-01-08 22:54:04]     "pilotErrorCode": 0,
[2026-01-08 22:54:04]     "pilotErrorDiag": "",
[2026-01-08 22:54:04]  *** Listing of results directory ***
[2026-01-08 22:54:04] total 665172
[2026-01-08 22:54:04] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 02:56 pilot3.tar.gz
[2026-01-08 22:54:04] -rwx------. 1 boincer umatlas     36322 Jan  8 03:01 runpilot2-wrapper.sh
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:01 queuedata.json
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas       100 Jan  8 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 22:54:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 06:22 run_atlas
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas       105 Jan  8 06:22 job.xml
[2026-01-08 22:54:04] -rw-r--r--. 3 boincer umatlas 222336602 Jan  8 06:22 EVNT.47898824._000394.pool.root.1
[2026-01-08 22:54:04] -rw-r--r--. 3 boincer umatlas 222336602 Jan  8 06:22 ATLAS.root_0
[2026-01-08 22:54:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 06:22 start_atlas.sh
[2026-01-08 22:54:04] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 06:22 shared
[2026-01-08 22:54:04] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 06:22 input.tar.gz
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas         0 Jan  8 06:22 boinc_lockfile
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas      2517 Jan  8 09:13 pandaJob.out
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas        57 Jan  8 09:13 setup.sh.local
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas    989835 Jan  8 09:14 agis_schedconf.cvmfs.json
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas      6659 Jan  8 22:47 init_data.xml
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas 219130837 Jan  8 22:52 HITS.47898826._018026.pool.root.1
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas       531 Jan  8 22:52 boinc_task_state.xml
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas      1055 Jan  8 22:53 memory_monitor_summary.json
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas        96 Jan  8 22:53 pilot_heartbeat.json
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas   1516240 Jan  8 22:53 agis_ddmendpoints.agis.ALL.json
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas    872043 Jan  8 22:53 log.47898826._018026.job.log.tgz.1
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas      7839 Jan  8 22:53 heartbeat.json
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 22:53 boinc_mmap_file
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas        28 Jan  8 22:53 wrapper_checkpoint.txt
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas       823 Jan  8 22:54 pilotlog.txt
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas   5839994 Jan  8 22:54 log.47898826._018026.job.log.1
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas       357 Jan  8 22:54 output.list
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas       620 Jan  8 22:54 runtime_log
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas   6727680 Jan  8 22:54 result.tar.gz
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas      9413 Jan  8 22:54 runtime_log.err
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas       786 Jan  8 22:54 4YuMDmU8zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjRjKDmGWpaIn.diag
[2026-01-08 22:54:04] -rw-r--r--. 1 boincer umatlas     23500 Jan  8 22:54 stderr.txt
[2026-01-08 22:54:04] HITS file was successfully produced:
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas 219130837 Jan  8 22:52 shared/HITS.pool.root.1
[2026-01-08 22:54:04]  *** Contents of shared directory: ***
[2026-01-08 22:54:04] total 438296
[2026-01-08 22:54:04] -rw-r--r--. 3 boincer umatlas 222336602 Jan  8 06:22 ATLAS.root_0
[2026-01-08 22:54:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 06:22 start_atlas.sh
[2026-01-08 22:54:04] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 06:22 input.tar.gz
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas 219130837 Jan  8 22:52 HITS.pool.root.1
[2026-01-08 22:54:04] -rw-------. 1 boincer umatlas   6727680 Jan  8 22:54 result.tar.gz
22:54:06 (3778208): run_atlas exited; CPU time 71903.659862
22:54:06 (3778208): called boinc_finish(0)

</stderr_txt>
]]>

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