Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:19 (3931): wrapper (7.7.26015): starting
09:12:19 (3931): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 09:12:19] Arguments: --nthreads 4
[2026-01-08 09:12:19] Threads: 4
[2026-01-08 09:12:19] Checking for CVMFS
[2026-01-08 09:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:12:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:12:21] 2.9.2.0 4127 0 29128 154896 3 1 29895451 36864000 0 130560 0 0 0.000 1335 53400 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 09:12:21] CVMFS is ok
[2026-01-08 09:12:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:12:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:12:21] Further information can be found at the LHC@home message board.
[2026-01-08 09:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:12:21] Checking for apptainer binary...
[2026-01-08 09:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:12:21] Running /usr/bin/apptainer --version
[2026-01-08 09:12:21] apptainer version 1.4.1-1.1
[2026-01-08 09:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:12:21] thA373a
[2026-01-08 09:12:21] apptainer works
[2026-01-08 09:12:21] Set ATHENA_PROC_NUMBER=4
[2026-01-08 09:12:21] Set ATHENA_CORE_NUMBER=4
[2026-01-08 09:12:21] Starting ATLAS job with PandaID=6962914141
[2026-01-08 09:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:31:35 (2855): wrapper (7.7.26015): starting
09:31:35 (2855): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 09:31:35] Arguments: --nthreads 4
[2026-01-08 09:31:35] Threads: 4
[2026-01-08 09:31:35] This job has been restarted, cleaning up previous attempt
[2026-01-08 09:31:35] Checking for CVMFS
[2026-01-08 09:31:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:31:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:31:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:31:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:31:39] 2.9.2.0 3053 0 29104 154897 3 1 29908541 36864001 0 130560 0 0 0.000 1335 58043 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 09:31:39] CVMFS is ok
[2026-01-08 09:31:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:31:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:31:39] Further information can be found at the LHC@home message board.
[2026-01-08 09:31:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:31:39] Checking for apptainer binary...
[2026-01-08 09:31:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:31:39] Running /usr/bin/apptainer --version
[2026-01-08 09:31:39] apptainer version 1.4.1-1.1
[2026-01-08 09:31:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:31:39] thA373a
[2026-01-08 09:31:39] apptainer works
[2026-01-08 09:31:39] Set ATHENA_PROC_NUMBER=4
[2026-01-08 09:31:39] Set ATHENA_CORE_NUMBER=4
[2026-01-08 09:31:39] Starting ATLAS job with PandaID=6962914141
[2026-01-08 09:31:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:11:01]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:11:01] 2026-01-08 10:10:24,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:11:01] 2026-01-08 10:10:24,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 11:11:01] 2026-01-08 10:10:24,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 11:11:01] 2026-01-08 10:10:24,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:11:01] 2026-01-08 10:10:24,191 | INFO     | will abort loop
[2026-01-08 11:11:01] 2026-01-08 10:10:24,414 | INFO     | all job control threads have been joined
[2026-01-08 11:11:01] 2026-01-08 10:10:24,720 | INFO     | all payload control threads have been joined
[2026-01-08 11:11:01] 2026-01-08 10:10:24,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:11:01] 2026-01-08 10:10:25,112 | INFO     | all data control threads have been joined
[2026-01-08 11:11:01] 2026-01-08 10:10:25,129 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,129 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,157 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,197 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,236 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,257 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:11:01] 2026-01-08 10:10:25,420 | INFO     | [job] control thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,726 | INFO     | [payload] control thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:25,891 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:26,068 | INFO     | [job] validate thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:26,118 | INFO     | [data] control thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:26,156 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:26,181 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:27,282 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:28,920 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:34,636 | INFO     | job.realtimelogging is not enabled
[2026-01-08 11:11:01] 2026-01-08 10:10:35,641 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:11:01] 2026-01-08 10:10:53,830 | INFO     | PID=7199 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 11:11:01] 2026-01-08 10:10:53,830 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:11:01] 2026-01-08 10:10:53,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:11:01] 2026-01-08 10:10:53,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:11:01] 2026-01-08 10:10:55,359 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:11:01] 2026-01-08 10:10:56,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618208827200)>', '<ExcThread(monitor, started 140617413809920)>']
[2026-01-08 11:11:01] 2026-01-08 10:10:56,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:11:01] 2026-01-08 10:10:56,846 | INFO     | [monitor] control thread has ended
[2026-01-08 11:11:01] 2026-01-08 10:11:01,297 | INFO     | all workflow threads have been joined
[2026-01-08 11:11:01] 2026-01-08 10:11:01,298 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:11:01] 2026-01-08 10:11:01,298 | INFO     | traces error code: 0
[2026-01-08 11:11:01] 2026-01-08 10:11:01,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:11:01] 2026-01-08 10:11:01,374 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:11:01] 2026-01-08 10:11:01,379 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:11:01] 2026-01-08 10:11:01,383 [wrapper] pilotpid: 7199
[2026-01-08 11:11:01] 2026-01-08 10:11:01,387 [wrapper] Pilot exit status: 0
[2026-01-08 11:11:01] 2026-01-08 10:11:01,399 [wrapper] pandaids: 6962914141 6962914141
[2026-01-08 11:11:01] 2026-01-08 10:11:01,421 [wrapper] cleanup supervisor_pilot   26062 7200
[2026-01-08 11:11:01] 2026-01-08 10:11:01,425 [wrapper] Test setup, not cleaning
[2026-01-08 11:11:01] 2026-01-08 10:11:01,429 [wrapper] apfmon messages muted
[2026-01-08 11:11:01] 2026-01-08 10:11:01,432 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:11:01] 2026-01-08 10:11:01,436 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:11:01]  *** Error codes and diagnostics ***
[2026-01-08 11:11:01]     "exeErrorCode": 0,
[2026-01-08 11:11:01]     "exeErrorDiag": "",
[2026-01-08 11:11:01]     "pilotErrorCode": 0,
[2026-01-08 11:11:01]     "pilotErrorDiag": "",
[2026-01-08 11:11:01]  *** Listing of results directory ***
[2026-01-08 11:11:01] total 661344
[2026-01-08 11:11:01] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 11:11:01] -rwx------ 1 boinc boinc     36322 Jan  8 09:00 runpilot2-wrapper.sh
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc       100 Jan  8 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:11:01] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 09:12 run_atlas
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc       105 Jan  8 09:12 job.xml
[2026-01-08 11:11:01] -rw-r--r-- 3 boinc boinc 227639219 Jan  8 09:12 EVNT.47898824._000312.pool.root.1
[2026-01-08 11:11:01] -rw-r--r-- 3 boinc boinc 227639219 Jan  8 09:12 ATLAS.root_0
[2026-01-08 11:11:01] -rw-r--r-- 2 boinc boinc    592394 Jan  8 09:12 input.tar.gz
[2026-01-08 11:11:01] -rw-r--r-- 2 boinc boinc     15847 Jan  8 09:12 start_atlas.sh
[2026-01-08 11:11:01] drwxrwx--x 2 boinc boinc      4096 Jan  8 09:12 shared
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc         0 Jan  8 09:12 boinc_setup_complete
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc         0 Jan  8 09:12 boinc_lockfile
[2026-01-08 11:11:01] -rw------- 1 boinc boinc   1516240 Jan  8 09:12 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      6215 Jan  8 09:31 init_data.xml
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      2518 Jan  8 09:31 pandaJob.out
[2026-01-08 11:11:01] -rw------- 1 boinc boinc    989819 Jan  8 09:31 agis_schedconf.cvmfs.json
[2026-01-08 11:11:01] -rw------- 1 boinc boinc 215757316 Jan  8 11:09 HITS.47898826._017358.pool.root.1
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc       529 Jan  8 11:10 boinc_task_state.xml
[2026-01-08 11:11:01] -rw------- 1 boinc boinc      1030 Jan  8 11:10 memory_monitor_summary.json
[2026-01-08 11:11:01] -rw------- 1 boinc boinc    281350 Jan  8 11:10 log.47898826._017358.job.log.tgz.1
[2026-01-08 11:11:01] -rw------- 1 boinc boinc        97 Jan  8 11:10 pilot_heartbeat.json
[2026-01-08 11:11:01] -rw------- 1 boinc boinc      7799 Jan  8 11:10 heartbeat.json
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      8192 Jan  8 11:10 boinc_mmap_file
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc        27 Jan  8 11:10 wrapper_checkpoint.txt
[2026-01-08 11:11:01] -rw------- 1 boinc boinc      5007 Jan  8 11:11 pilotlog.txt
[2026-01-08 11:11:01] -rw------- 1 boinc boinc    855251 Jan  8 11:11 log.47898826._017358.job.log.1
[2026-01-08 11:11:01] -rw------- 1 boinc boinc       357 Jan  8 11:11 output.list
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc       620 Jan  8 11:11 runtime_log
[2026-01-08 11:11:01] -rw------- 1 boinc boinc   1157120 Jan  8 11:11 result.tar.gz
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      8987 Jan  8 11:11 runtime_log.err
[2026-01-08 11:11:01] -rw------- 1 boinc boinc       790 Jan  8 11:11 RomLDm77zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpGeKDmmVrpjm.diag
[2026-01-08 11:11:01] -rw-r--r-- 1 boinc boinc      9607 Jan  8 11:11 stderr.txt
[2026-01-08 11:11:01] HITS file was successfully produced:
[2026-01-08 11:11:01] -rw------- 1 boinc boinc 215757316 Jan  8 11:09 shared/HITS.pool.root.1
[2026-01-08 11:11:01]  *** Contents of shared directory: ***
[2026-01-08 11:11:01] total 434744
[2026-01-08 11:11:01] -rw-r--r-- 3 boinc boinc 227639219 Jan  8 09:12 ATLAS.root_0
[2026-01-08 11:11:01] -rw-r--r-- 2 boinc boinc    592394 Jan  8 09:12 input.tar.gz
[2026-01-08 11:11:01] -rw-r--r-- 2 boinc boinc     15847 Jan  8 09:12 start_atlas.sh
[2026-01-08 11:11:01] -rw------- 1 boinc boinc 215757316 Jan  8 11:09 HITS.pool.root.1
[2026-01-08 11:11:01] -rw------- 1 boinc boinc   1157120 Jan  8 11:11 result.tar.gz
11:11:03 (2855): run_atlas exited; CPU time 22565.541369
11:11:03 (2855): called boinc_finish(0)

</stderr_txt>
]]>

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