Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:11:06 (30784): wrapper (7.7.26015): starting
11:11:06 (30784): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 11:11:06] Arguments: --nthreads 4
[2026-01-08 11:11:06] Threads: 4
[2026-01-08 11:11:06] Checking for CVMFS
[2026-01-08 11:11:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:11:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:11:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:11:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:11:07] 2.9.2.0 3053 99 52160 154898 0 57 29915591 36864000 0 130560 0 71341 99.993 2786 30955 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 11:11:07] CVMFS is ok
[2026-01-08 11:11:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 11:11:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 11:11:07] Further information can be found at the LHC@home message board.
[2026-01-08 11:11:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:11:07] Checking for apptainer binary...
[2026-01-08 11:11:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:11:07] Running /usr/bin/apptainer --version
[2026-01-08 11:11:07] apptainer version 1.4.1-1.1
[2026-01-08 11:11:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:11:07] thA373a
[2026-01-08 11:11:07] apptainer works
[2026-01-08 11:11:07] Set ATHENA_PROC_NUMBER=4
[2026-01-08 11:11:07] Set ATHENA_CORE_NUMBER=4
[2026-01-08 11:11:07] Starting ATLAS job with PandaID=6962914168
[2026-01-08 11:11:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:18:25]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:18:25] 2026-01-08 10:17:53,408 | INFO     | job 6962914168 has completed (purged errors)
[2026-01-08 11:18:25] 2026-01-08 10:17:53,409 | INFO     | overall cleanup function is called
[2026-01-08 11:18:25] 2026-01-08 10:17:54,415 | INFO     | --- collectZombieJob: --- 10, [41146]
[2026-01-08 11:18:25] 2026-01-08 10:17:54,415 | INFO     | zombie collector waiting for pid 41146
[2026-01-08 11:18:25] 2026-01-08 10:17:54,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:18:25] 2026-01-08 10:17:54,415 | INFO     | collected zombie processes
[2026-01-08 11:18:25] 2026-01-08 10:17:54,415 | INFO     | will attempt to kill all subprocesses of pid=41146
[2026-01-08 11:18:25] 2026-01-08 10:17:54,460 | INFO     | process IDs to be killed: [41146] (in reverse order)
[2026-01-08 11:18:25] 2026-01-08 10:17:54,492 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:18:25] 2026-01-08 10:17:54,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:18:25] 2026-01-08 10:17:54,494 | INFO     | did not find any defunct processes belonging to 41146
[2026-01-08 11:18:25] 2026-01-08 10:17:54,496 | INFO     | did not find any defunct processes belonging to 41146
[2026-01-08 11:18:25] 2026-01-08 10:17:54,496 | INFO     | ready for new job
[2026-01-08 11:18:25] 2026-01-08 10:17:54,496 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | ***************************************
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | ***************************************
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | 
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | architecture information:
[2026-01-08 11:18:25] 2026-01-08 10:17:54,497 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:18:25] 2026-01-08 10:17:54,510 | INFO     | cat /etc/os-release:
[2026-01-08 11:18:25] NAME="CentOS Linux"
[2026-01-08 11:18:25] VERSION="7 (Core)"
[2026-01-08 11:18:25] ID="centos"
[2026-01-08 11:18:25] ID_LIKE="rhel fedora"
[2026-01-08 11:18:25] VERSION_ID="7"
[2026-01-08 11:18:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:18:25] ANSI_COLOR="0;31"
[2026-01-08 11:18:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:18:25] HOME_URL="https://www.centos.org/"
[2026-01-08 11:18:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:18:25] 
[2026-01-08 11:18:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:18:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:18:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:18:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:18:25] 
[2026-01-08 11:18:25] 2026-01-08 10:17:54,511 | INFO     | ***************************************
[2026-01-08 11:18:25] 2026-01-08 10:17:55,014 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 11:18:25] 2026-01-08 10:17:55,031 | INFO     | sufficient remaining disk space (331384619008 B)
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | INFO     | update_server=False
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:18:25] 2026-01-08 10:17:55,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:18:25] 2026-01-08 10:17:55,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:18:25] 2026-01-08 10:17:55,455 | INFO     | aborting loop
[2026-01-08 11:18:25] 2026-01-08 10:17:55,554 | INFO     | all payload control threads have been joined
[2026-01-08 11:18:25] 2026-01-08 10:17:55,858 | INFO     | all data control threads have been joined
[2026-01-08 11:18:25] 2026-01-08 10:17:56,037 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,038 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,051 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,108 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,205 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,231 | INFO     | all job control threads have been joined
[2026-01-08 11:18:25] 2026-01-08 10:17:56,376 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,461 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,560 | INFO     | [payload] control thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,597 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,864 | INFO     | [data] control thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,879 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:56,960 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:57,038 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:57,237 | INFO     | [job] control thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:57,438 | INFO     | [job] validate thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:17:59,039 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:18:25] 2026-01-08 10:18:14,856 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:18:25] 2026-01-08 10:18:15,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576285280064)>', '<ExcThread(monitor, started 140575286228736)>']
[2026-01-08 11:18:25] 2026-01-08 10:18:20,586 | INFO     | all workflow threads have been joined
[2026-01-08 11:18:25] 2026-01-08 10:18:20,587 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:18:25] 2026-01-08 10:18:20,587 | INFO     | traces error code: 0
[2026-01-08 11:18:25] 2026-01-08 10:18:20,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:18:25] 2026-01-08 10:18:24,812 | INFO     | PID=34576 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | CRITICAL | thread 'MainThread' is not alive
[2026-01-08 11:18:25] 2026-01-08 10:18:24,813 | INFO     | [monitor] control thread has ended
[2026-01-08 11:18:25] 2026-01-08 10:18:24,888 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:18:25] 2026-01-08 10:18:24,892 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:18:25] 2026-01-08 10:18:24,897 [wrapper] pilotpid: 34576
[2026-01-08 11:18:25] 2026-01-08 10:18:24,901 [wrapper] Pilot exit status: 0
[2026-01-08 11:18:25] 2026-01-08 10:18:24,912 [wrapper] pandaids: 6962914168
[2026-01-08 11:18:25] 2026-01-08 10:18:24,934 [wrapper] cleanup supervisor_pilot   34582 34577
[2026-01-08 11:18:25] 2026-01-08 10:18:24,938 [wrapper] Test setup, not cleaning
[2026-01-08 11:18:25] 2026-01-08 10:18:24,942 [wrapper] apfmon messages muted
[2026-01-08 11:18:25] 2026-01-08 10:18:24,946 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:18:25] 2026-01-08 10:18:24,950 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:18:25]  *** Error codes and diagnostics ***
[2026-01-08 11:18:25]     "exeErrorCode": 65,
[2026-01-08 11:18:25]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7837.56 KB/s",
[2026-01-08 11:18:25]     "pilotErrorCode": 1305,
[2026-01-08 11:18:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-01-08 11:18:25]  *** Listing of results directory ***
[2026-01-08 11:18:25] total 222796
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 11:18:25] -rwx------ 1 boinc boinc     36322 Jan  8 09:00 runpilot2-wrapper.sh
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc       100 Jan  8 11:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:18:25] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 11:11 run_atlas
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc       105 Jan  8 11:11 job.xml
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc 223767818 Jan  8 11:11 EVNT.47898824._000313.pool.root.1
[2026-01-08 11:18:25] drwxrwx--x 2 boinc boinc      4096 Jan  8 11:11 shared
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc    592393 Jan  8 11:11 input.tar.gz
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:11 start_atlas.sh
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:11 boinc_setup_complete
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:11 boinc_lockfile
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc      2518 Jan  8 11:11 pandaJob.out
[2026-01-08 11:18:25] -rw------- 1 boinc boinc    989843 Jan  8 11:11 agis_schedconf.cvmfs.json
[2026-01-08 11:18:25] -rw------- 1 boinc boinc   1516240 Jan  8 11:11 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:18:25] drwx------ 5 boinc boinc      4096 Jan  8 11:11 pilot3
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc      6379 Jan  8 11:12 init_data.xml
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc       526 Jan  8 11:15 boinc_task_state.xml
[2026-01-08 11:18:25] -rw------- 1 boinc boinc      1019 Jan  8 11:15 memory_monitor_summary.json
[2026-01-08 11:18:25] -rw------- 1 boinc boinc    124279 Jan  8 11:15 log.47898826._017385.job.log.tgz.1
[2026-01-08 11:18:25] -rw------- 1 boinc boinc      9862 Jan  8 11:17 heartbeat.json
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc      8192 Jan  8 11:18 boinc_mmap_file
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc        24 Jan  8 11:18 wrapper_checkpoint.txt
[2026-01-08 11:18:25] -rw------- 1 boinc boinc       815 Jan  8 11:18 pilotlog.txt
[2026-01-08 11:18:25] -rw------- 1 boinc boinc        95 Jan  8 11:18 pilot_heartbeat.json
[2026-01-08 11:18:25] -rw------- 1 boinc boinc    113224 Jan  8 11:18 log.47898826._017385.job.log.1
[2026-01-08 11:18:25] -rw------- 1 boinc boinc       188 Jan  8 11:18 output.list
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc       620 Jan  8 11:18 runtime_log
[2026-01-08 11:18:25] -rw------- 1 boinc boinc    256000 Jan  8 11:18 result.tar.gz
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc      8749 Jan  8 11:18 runtime_log.err
[2026-01-08 11:18:25] -rw------- 1 boinc boinc       651 Jan  8 11:18 2AWLDm67zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoNjKDmHu5Knn.diag
[2026-01-08 11:18:25] -rw-r--r-- 1 boinc boinc     13010 Jan  8 11:18 stderr.txt
[2026-01-08 11:18:25] No HITS result produced
[2026-01-08 11:18:25]  *** Contents of shared directory: ***
[2026-01-08 11:18:25] total 219376
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc 223767818 Jan  8 11:11 ATLAS.root_0
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc    592393 Jan  8 11:11 input.tar.gz
[2026-01-08 11:18:25] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:11 start_atlas.sh
[2026-01-08 11:18:25] -rw------- 1 boinc boinc    256000 Jan  8 11:18 result.tar.gz
11:18:26 (30784): run_atlas exited; CPU time 136.329871
11:18:26 (30784): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN