Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:43:59 (1663923): wrapper (7.7.26015): starting
12:43:59 (1663923): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 12:43:59] Arguments: --nthreads 4
[2026-01-08 12:43:59] Threads: 4
[2026-01-08 12:43:59] Checking for CVMFS
[2026-01-08 12:44:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:44:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:44:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:44:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:44:00] 2.9.2.0 1472446 689 74996 154906 0 56 20875167 36864000 0 130560 0 499378 99.987 31665 14498 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 12:44:00] CVMFS is ok
[2026-01-08 12:44:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:44:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:44:00] Further information can be found at the LHC@home message board.
[2026-01-08 12:44:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:44:00] Checking for apptainer binary...
[2026-01-08 12:44:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:44:00] Running /usr/bin/apptainer --version
[2026-01-08 12:44:00] apptainer version 1.4.1-1.1
[2026-01-08 12:44:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:44:00] thA334
[2026-01-08 12:44:00] apptainer works
[2026-01-08 12:44:00] Set ATHENA_PROC_NUMBER=4
[2026-01-08 12:44:00] Set ATHENA_CORE_NUMBER=4
[2026-01-08 12:44:00] Starting ATLAS job with PandaID=6962914128
[2026-01-08 12:44:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 14:22:20]  *** The last 200 lines of the pilot log: ***
[2026-01-08 14:22:20] 2026-01-08 13:21:46,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 14:22:20] 2026-01-08 13:21:46,377 | INFO     | collected zombie processes
[2026-01-08 14:22:20] 2026-01-08 13:21:46,377 | INFO     | will attempt to kill all subprocesses of pid=1674289
[2026-01-08 14:22:20] 2026-01-08 13:21:46,421 | INFO     | process IDs to be killed: [1674289] (in reverse order)
[2026-01-08 14:22:20] 2026-01-08 13:21:46,451 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 14:22:20] 2026-01-08 13:21:46,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 14:22:20] 2026-01-08 13:21:46,453 | INFO     | did not find any defunct processes belonging to 1674289
[2026-01-08 14:22:20] 2026-01-08 13:21:46,455 | INFO     | did not find any defunct processes belonging to 1674289
[2026-01-08 14:22:20] 2026-01-08 13:21:46,455 | INFO     | ready for new job
[2026-01-08 14:22:20] 2026-01-08 13:21:46,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 14:22:20] 2026-01-08 13:21:46,455 | INFO     | ***************************************
[2026-01-08 14:22:20] 2026-01-08 13:21:46,455 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 14:22:20] 2026-01-08 13:21:46,456 | INFO     | ***************************************
[2026-01-08 14:22:20] 2026-01-08 13:21:46,456 | INFO     | 
[2026-01-08 14:22:20] 2026-01-08 13:21:46,456 | INFO     | architecture information:
[2026-01-08 14:22:20] 2026-01-08 13:21:46,456 | INFO     | executing command: cat /etc/os-release
[2026-01-08 14:22:20] 2026-01-08 13:21:46,468 | INFO     | cat /etc/os-release:
[2026-01-08 14:22:20] NAME="CentOS Linux"
[2026-01-08 14:22:20] VERSION="7 (Core)"
[2026-01-08 14:22:20] ID="centos"
[2026-01-08 14:22:20] ID_LIKE="rhel fedora"
[2026-01-08 14:22:20] VERSION_ID="7"
[2026-01-08 14:22:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 14:22:20] ANSI_COLOR="0;31"
[2026-01-08 14:22:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 14:22:20] HOME_URL="https://www.centos.org/"
[2026-01-08 14:22:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 14:22:20] 
[2026-01-08 14:22:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 14:22:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 14:22:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 14:22:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 14:22:20] 
[2026-01-08 14:22:20] 2026-01-08 13:21:46,469 | INFO     | ***************************************
[2026-01-08 14:22:20] 2026-01-08 13:21:46,972 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 14:22:20] 2026-01-08 13:21:46,989 | INFO     | sufficient remaining disk space (239654141952 B)
[2026-01-08 14:22:20] 2026-01-08 13:21:46,989 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 14:22:20] 2026-01-08 13:21:46,989 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 14:22:20] 2026-01-08 13:21:46,989 | INFO     | update_server=False
[2026-01-08 14:22:20] 2026-01-08 13:21:46,990 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 14:22:20] 2026-01-08 13:21:46,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:22:20] 2026-01-08 13:21:46,990 | INFO     | aborting loop
[2026-01-08 14:22:20] 2026-01-08 13:21:46,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 14:22:20] 2026-01-08 13:21:46,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 14:22:20] 2026-01-08 13:21:47,603 | INFO     | all data control threads have been joined
[2026-01-08 14:22:20] 2026-01-08 13:21:47,683 | INFO     | all payload control threads have been joined
[2026-01-08 14:22:20] 2026-01-08 13:21:47,995 | INFO     | [job] retrieve thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:47,996 | INFO     | [job] job monitor thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:47,996 | INFO     | [job] queue monitor thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,013 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,049 | INFO     | [payload] failed_post thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,354 | INFO     | [data] copytool_in thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,452 | INFO     | all job control threads have been joined
[2026-01-08 14:22:20] 2026-01-08 13:21:48,591 | INFO     | [payload] validate_post thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,608 | INFO     | [data] control thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,689 | INFO     | [payload] control thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:48,996 | INFO     | [data] copytool_out thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:49,355 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:49,365 | INFO     | [job] validate thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:49,421 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:49,458 | INFO     | [job] control thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:49,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 14:22:20] 2026-01-08 13:21:53,849 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:21:57,416 | INFO     | job.realtimelogging is not enabled
[2026-01-08 14:22:20] 2026-01-08 13:21:58,422 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 14:22:20] 2026-01-08 13:22:13,712 | INFO     | [monitor] cgroup control has ended
[2026-01-08 14:22:20] 2026-01-08 13:22:15,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544933467968)>', '<ExcThread(monitor, started 140543904425728)>']
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | INFO     | PID=1667718 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 14:22:20] 2026-01-08 13:22:18,085 | INFO     | [monitor] control thread has ended
[2026-01-08 14:22:20] 2026-01-08 13:22:20,266 | INFO     | all workflow threads have been joined
[2026-01-08 14:22:20] 2026-01-08 13:22:20,266 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 14:22:20] 2026-01-08 13:22:20,267 | INFO     | traces error code: 0
[2026-01-08 14:22:20] 2026-01-08 13:22:20,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 14:22:20] 2026-01-08 13:22:20,335 [wrapper] ==== pilot stdout END ====
[2026-01-08 14:22:20] 2026-01-08 13:22:20,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 14:22:20] 2026-01-08 13:22:20,342 [wrapper] pilotpid: 1667718
[2026-01-08 14:22:20] 2026-01-08 13:22:20,346 [wrapper] Pilot exit status: 0
[2026-01-08 14:22:20] 2026-01-08 13:22:20,357 [wrapper] pandaids: 6962914128
[2026-01-08 14:22:20] 2026-01-08 13:22:20,378 [wrapper] cleanup supervisor_pilot 1686649 1667719
[2026-01-08 14:22:20] 2026-01-08 13:22:20,382 [wrapper] Test setup, not cleaning
[2026-01-08 14:22:20] 2026-01-08 13:22:20,386 [wrapper] apfmon messages muted
[2026-01-08 14:22:20] 2026-01-08 13:22:20,390 [wrapper] ==== wrapper stdout END ====
[2026-01-08 14:22:20] 2026-01-08 13:22:20,394 [wrapper] ==== wrapper stderr END ====
[2026-01-08 14:22:20]  *** Error codes and diagnostics ***
[2026-01-08 14:22:20]     "exeErrorCode": 0,
[2026-01-08 14:22:20]     "exeErrorDiag": "",
[2026-01-08 14:22:20]     "pilotErrorCode": 0,
[2026-01-08 14:22:20]     "pilotErrorDiag": "",
[2026-01-08 14:22:20]  *** Listing of results directory ***
[2026-01-08 14:22:20] total 445180
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 14:22:20] -rwx------ 1 boinc boinc     36322 Jan  8 09:00 runpilot2-wrapper.sh
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc       100 Jan  8 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 14:22:20] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 12:43 run_atlas
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc       105 Jan  8 12:43 job.xml
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc 224644075 Jan  8 12:43 EVNT.47898824._000311.pool.root.1
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc    592392 Jan  8 12:43 input.tar.gz
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc     15847 Jan  8 12:43 start_atlas.sh
[2026-01-08 14:22:20] drwxrwx--x 2 boinc boinc      4096 Jan  8 12:43 shared
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc         0 Jan  8 12:43 boinc_setup_complete
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc      6369 Jan  8 12:43 init_data.xml
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc         0 Jan  8 12:43 boinc_lockfile
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc      2518 Jan  8 12:44 pandaJob.out
[2026-01-08 14:22:20] -rw------- 1 boinc boinc    989835 Jan  8 12:44 agis_schedconf.cvmfs.json
[2026-01-08 14:22:20] -rw------- 1 boinc boinc   1516240 Jan  8 12:44 agis_ddmendpoints.agis.ALL.json
[2026-01-08 14:22:20] drwx------ 5 boinc boinc      4096 Jan  8 12:44 pilot3
[2026-01-08 14:22:20] -rw------- 1 boinc boinc 225023074 Jan  8 14:21 HITS.47898826._017345.pool.root.1
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc       529 Jan  8 14:21 boinc_task_state.xml
[2026-01-08 14:22:20] -rw------- 1 boinc boinc      1015 Jan  8 14:21 memory_monitor_summary.json
[2026-01-08 14:22:20] -rw------- 1 boinc boinc        95 Jan  8 14:21 pilot_heartbeat.json
[2026-01-08 14:22:20] -rw------- 1 boinc boinc    292825 Jan  8 14:21 log.47898826._017345.job.log.tgz.1
[2026-01-08 14:22:20] -rw------- 1 boinc boinc      7759 Jan  8 14:21 heartbeat.json
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc      8192 Jan  8 14:22 boinc_mmap_file
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc        27 Jan  8 14:22 wrapper_checkpoint.txt
[2026-01-08 14:22:20] -rw------- 1 boinc boinc      4824 Jan  8 14:22 pilotlog.txt
[2026-01-08 14:22:20] -rw------- 1 boinc boinc    851992 Jan  8 14:22 log.47898826._017345.job.log.1
[2026-01-08 14:22:20] -rw------- 1 boinc boinc       357 Jan  8 14:22 output.list
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc       620 Jan  8 14:22 runtime_log
[2026-01-08 14:22:20] -rw------- 1 boinc boinc   1167360 Jan  8 14:22 result.tar.gz
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc      8897 Jan  8 14:22 runtime_log.err
[2026-01-08 14:22:20] -rw------- 1 boinc boinc       659 Jan  8 14:22 Y8cLDm77zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiGeKDmcCWpIo.diag
[2026-01-08 14:22:20] -rw-r--r-- 1 boinc boinc     10507 Jan  8 14:22 stderr.txt
[2026-01-08 14:22:20] HITS file was successfully produced:
[2026-01-08 14:22:20] -rw------- 1 boinc boinc 225023074 Jan  8 14:21 shared/HITS.pool.root.1
[2026-01-08 14:22:20]  *** Contents of shared directory: ***
[2026-01-08 14:22:20] total 440876
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc 224644075 Jan  8 12:43 ATLAS.root_0
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc    592392 Jan  8 12:43 input.tar.gz
[2026-01-08 14:22:20] -rw-r--r-- 2 boinc boinc     15847 Jan  8 12:43 start_atlas.sh
[2026-01-08 14:22:20] -rw------- 1 boinc boinc 225023074 Jan  8 14:21 HITS.pool.root.1
[2026-01-08 14:22:20] -rw------- 1 boinc boinc   1167360 Jan  8 14:22 result.tar.gz
14:22:21 (1663923): run_atlas exited; CPU time 22199.988846
14:22:21 (1663923): called boinc_finish(0)

</stderr_txt>
]]>

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