Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:01:12 (9708): wrapper (7.7.26015): starting
03:01:12 (9708): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 03:01:12] Arguments: --nthreads 8
[2026-01-08 03:01:12] Threads: 8
[2026-01-08 03:01:12] Checking for CVMFS
[2026-01-08 03:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 03:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 03:01:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 03:01:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 03:01:12] 2.11.2.0 2830 134950 84120 154896 0 1 11333699 20275200 1 130560 0 36520797 99.890 7451115 32831 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 03:01:12] CVMFS is ok
[2026-01-08 03:01:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 03:01:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 03:01:12] Further information can be found at the LHC@home message board.
[2026-01-08 03:01:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 03:01:12] Checking for apptainer binary...
[2026-01-08 03:01:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 03:01:12] Running /usr/bin/apptainer --version
[2026-01-08 03:01:12] apptainer version 1.3.2-1.el7
[2026-01-08 03:01:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 03:01:14] c-204-20.aglt2.org
[2026-01-08 03:01:14] apptainer works
[2026-01-08 03:01:14] Set ATHENA_PROC_NUMBER=8
[2026-01-08 03:01:14] Set ATHENA_CORE_NUMBER=8
[2026-01-08 03:01:14] Starting ATLAS job with PandaID=6962913517
[2026-01-08 03:01:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:29:14 (3080): wrapper (7.7.26015): starting
03:29:14 (3080): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 03:29:14] Arguments: --nthreads 8
[2026-01-08 03:29:14] Threads: 8
[2026-01-08 03:29:14] This job has been restarted, cleaning up previous attempt
[2026-01-08 03:29:14] Checking for CVMFS
[2026-01-08 03:29:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 03:29:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 03:29:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 03:29:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 03:29:15] 2.11.2.0 2830 134978 83480 154897 0 11 11376852 20275200 1 130560 0 36581526 99.890 7452536 32832 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 03:29:15] CVMFS is ok
[2026-01-08 03:29:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 03:29:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 03:29:15] Further information can be found at the LHC@home message board.
[2026-01-08 03:29:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 03:29:15] Checking for apptainer binary...
[2026-01-08 03:29:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 03:29:15] Running /usr/bin/apptainer --version
[2026-01-08 03:29:15] apptainer version 1.3.2-1.el7
[2026-01-08 03:29:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 03:29:16] c-204-20.aglt2.org
[2026-01-08 03:29:16] apptainer works
[2026-01-08 03:29:16] Set ATHENA_PROC_NUMBER=8
[2026-01-08 03:29:16] Set ATHENA_CORE_NUMBER=8
[2026-01-08 03:29:17] Starting ATLAS job with PandaID=6962913517
[2026-01-08 03:29:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 06:29:57]  *** The last 200 lines of the pilot log: ***
[2026-01-08 06:29:57] 2026-01-08 11:28:54,034 | INFO     | time since job start (10760s) is within the limit (174528.0s)
[2026-01-08 06:29:57] 2026-01-08 11:28:54,585 | INFO     | monitor loop #792: job 0:6962913517 is in state 'finished'
[2026-01-08 06:29:57] 2026-01-08 11:28:54,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 06:29:57] 2026-01-08 11:28:55,154 | INFO     | PID=7133 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 06:29:57] 2026-01-08 11:28:56,154 | INFO     | time since job start (10762s) is within the limit (174528.0s)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,096 | INFO     | monitor loop #793: job 0:6962913517 is in state 'finished'
[2026-01-08 06:29:57] 2026-01-08 11:28:57,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,385 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 06:29:57] 2026-01-08 11:28:57,388 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2026-01-08 06:29:57] 2026-01-08 11:28:57,389 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962913517/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,390 | INFO     | extracted standard info from prmon json
[2026-01-08 06:29:57] 2026-01-08 11:28:57,390 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 06:29:57] 2026-01-08 11:28:57,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 06:29:57] 2026-01-08 11:28:57,390 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 06:29:57] 2026-01-08 11:28:57,390 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 06:29:57] 2026-01-08 11:28:57,394 | INFO     | fitting pss+swap vs Time
[2026-01-08 06:29:57] 2026-01-08 11:28:57,394 | INFO     | sum of square deviations: 1690450300.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,395 | INFO     | sum of deviations: -12774871136.999996
[2026-01-08 06:29:57] 2026-01-08 11:28:57,395 | INFO     | mean x: 1767866343.5
[2026-01-08 06:29:57] 2026-01-08 11:28:57,395 | INFO     | mean y: 2540172.9431818184
[2026-01-08 06:29:57] 2026-01-08 11:28:57,395 | INFO     | intersect: 13362450680.606064
[2026-01-08 06:29:57] 2026-01-08 11:28:57,396 | INFO     | chi2: 1.609770204336407
[2026-01-08 06:29:57] 2026-01-08 11:28:57,396 | INFO     | sum of square deviations: 1550429070.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,397 | INFO     | sum of deviations: -12057954058.000004
[2026-01-08 06:29:57] 2026-01-08 11:28:57,397 | INFO     | mean x: 1767866191.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,397 | INFO     | mean y: 2540953.9707602337
[2026-01-08 06:29:57] 2026-01-08 11:28:57,397 | INFO     | intersect: 13751540972.249222
[2026-01-08 06:29:57] 2026-01-08 11:28:57,398 | INFO     | chi2: 1.6087385619181342
[2026-01-08 06:29:57] 2026-01-08 11:28:57,398 | INFO     | current chi2=1.6087385619181342 (change=0.06408631589116018 %)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,398 | INFO     | right removable region: 170
[2026-01-08 06:29:57] 2026-01-08 11:28:57,398 | INFO     | sum of square deviations: 1550429070.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,399 | INFO     | sum of deviations: -39051114566.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,399 | INFO     | mean x: 1767866496.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,399 | INFO     | mean y: 2568414.222222222
[2026-01-08 06:29:57] 2026-01-08 11:28:57,400 | INFO     | intersect: 44530343601.44119
[2026-01-08 06:29:57] 2026-01-08 11:28:57,400 | INFO     | chi2: 0.16834466794949954
[2026-01-08 06:29:57] 2026-01-08 11:28:57,400 | INFO     | current chi2=0.16834466794949954 (change=89.54231681664801 %)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,400 | INFO     | sum of square deviations: 1418361477.5
[2026-01-08 06:29:57] 2026-01-08 11:28:57,401 | INFO     | sum of deviations: -36839106824.000015
[2026-01-08 06:29:57] 2026-01-08 11:28:57,401 | INFO     | mean x: 1767866648.5
[2026-01-08 06:29:57] 2026-01-08 11:28:57,401 | INFO     | mean y: 2565812.120481928
[2026-01-08 06:29:57] 2026-01-08 11:28:57,402 | INFO     | intersect: 45919371469.78005
[2026-01-08 06:29:57] 2026-01-08 11:28:57,402 | INFO     | chi2: 0.15693436711714556
[2026-01-08 06:29:57] 2026-01-08 11:28:57,402 | INFO     | current chi2=0.15693436711714556 (change=6.777940145854139 %)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,402 | INFO     | left removable region: 20
[2026-01-08 06:29:57] 2026-01-08 11:28:57,402 | INFO     | sum of square deviations: 1046484737.5
[2026-01-08 06:29:57] 2026-01-08 11:28:57,403 | INFO     | sum of deviations: -25597118534.0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,403 | INFO     | mean x: 1767866770.5
[2026-01-08 06:29:57] 2026-01-08 11:28:57,403 | INFO     | mean y: 2554591.8
[2026-01-08 06:29:57] 2026-01-08 11:28:57,404 | INFO     | intersect: 43244747865.36246
[2026-01-08 06:29:57] 2026-01-08 11:28:57,404 | INFO     | chi2: 0.1420096613532021
[2026-01-08 06:29:57] 2026-01-08 11:28:57,404 | INFO     | current memory leak: -24.46 B/s (using 150 data points, chi2=0.14)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,404 | INFO     | could have reported an average CPU frequency of 2021 MHz (9 samples)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | ..............................
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . Timing measurements:
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . get job = 0 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . initial setup = 1 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . payload setup = 8 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . stage-in = 0 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . payload execution = 10721 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . stage-out = 2 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,405 | INFO     | . log creation = 0 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,406 | INFO     | ..............................
[2026-01-08 06:29:57] 2026-01-08 11:28:57,678 | INFO     | 
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | job summary report
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | --------------------------------------------------
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | PanDA job id: 6962913517
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | task id: 47898826
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | errors: (none)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,679 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 06:29:57] 2026-01-08 11:28:57,680 | INFO     | pilot state: finished 
[2026-01-08 06:29:57] 2026-01-08 11:28:57,680 | INFO     | transexitcode: 0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,680 | INFO     | exeerrorcode: 0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,680 | INFO     | exeerrordiag: 
[2026-01-08 06:29:57] 2026-01-08 11:28:57,680 | INFO     | exitcode: 0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,681 | INFO     | exitmsg: OK
[2026-01-08 06:29:57] 2026-01-08 11:28:57,681 | INFO     | cpuconsumptiontime: 80282 s
[2026-01-08 06:29:57] 2026-01-08 11:28:57,681 | INFO     | nevents: 400
[2026-01-08 06:29:57] 2026-01-08 11:28:57,681 | INFO     | neventsw: 0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,681 | INFO     | pid: 13625
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | pgrp: 13625
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | corecount: 8
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | event service: False
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | sizes: {0: 2283797, 1: 2283996, 7: 2284258, 11: 2284286, 10733: 2313258, 10737: 2322256, 10738: 2322440, 10746: 2322698}
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | --------------------------------------------------
[2026-01-08 06:29:57] 2026-01-08 11:28:57,682 | INFO     | 
[2026-01-08 06:29:57] 2026-01-08 11:28:57,683 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 06:29:57] 2026-01-08 11:28:57,710 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,710 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,713 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,714 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 06:29:57] 2026-01-08 11:28:57,714 | INFO     | job 6962913517 has completed (purged errors)
[2026-01-08 06:29:57] 2026-01-08 11:28:57,714 | INFO     | overall cleanup function is called
[2026-01-08 06:29:57] 2026-01-08 11:28:58,721 | INFO     | --- collectZombieJob: --- 10, [13625]
[2026-01-08 06:29:57] 2026-01-08 11:28:58,721 | INFO     | zombie collector waiting for pid 13625
[2026-01-08 06:29:57] 2026-01-08 11:28:58,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 06:29:57] 2026-01-08 11:28:58,722 | INFO     | collected zombie processes
[2026-01-08 06:29:57] 2026-01-08 11:28:58,722 | INFO     | will attempt to kill all subprocesses of pid=13625
[2026-01-08 06:29:57] 2026-01-08 11:28:58,810 | INFO     | process IDs to be killed: [13625] (in reverse order)
[2026-01-08 06:29:57] 2026-01-08 11:28:58,869 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 06:29:57] 2026-01-08 11:28:58,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 06:29:57] 2026-01-08 11:28:58,874 | INFO     | did not find any defunct processes belonging to 13625
[2026-01-08 06:29:57] 2026-01-08 11:28:58,878 | INFO     | did not find any defunct processes belonging to 13625
[2026-01-08 06:29:57] 2026-01-08 11:28:58,878 | INFO     | ready for new job
[2026-01-08 06:29:57] 2026-01-08 11:28:58,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 06:29:57] 2026-01-08 11:28:58,880 | INFO     | ***************************************
[2026-01-08 06:29:57] 2026-01-08 11:28:58,880 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 06:29:57] 2026-01-08 11:28:58,880 | INFO     | ***************************************
[2026-01-08 06:29:57] 2026-01-08 11:28:58,880 | INFO     | 
[2026-01-08 06:29:57] 2026-01-08 11:28:58,881 | INFO     | architecture information:
[2026-01-08 06:29:57] 2026-01-08 11:28:58,882 | INFO     | executing command: cat /etc/os-release
[2026-01-08 06:29:57] 2026-01-08 11:28:58,899 | INFO     | cat /etc/os-release:
[2026-01-08 06:29:57] NAME="CentOS Linux"
[2026-01-08 06:29:57] VERSION="7 (Core)"
[2026-01-08 06:29:57] ID="centos"
[2026-01-08 06:29:57] ID_LIKE="rhel fedora"
[2026-01-08 06:29:57] VERSION_ID="7"
[2026-01-08 06:29:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 06:29:57] ANSI_COLOR="0;31"
[2026-01-08 06:29:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 06:29:57] HOME_URL="https://www.centos.org/"
[2026-01-08 06:29:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 06:29:57] 
[2026-01-08 06:29:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 06:29:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 06:29:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 06:29:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 06:29:57] 
[2026-01-08 06:29:57] 2026-01-08 11:28:58,900 | INFO     | ***************************************
[2026-01-08 06:29:57] 2026-01-08 11:28:59,402 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 06:29:57] 2026-01-08 11:28:59,421 | INFO     | sufficient remaining disk space (18656264192 B)
[2026-01-08 06:29:57] 2026-01-08 11:28:59,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 06:29:57] 2026-01-08 11:28:59,422 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 06:29:57] 2026-01-08 11:28:59,422 | INFO     | update_server=False
[2026-01-08 06:29:57] 2026-01-08 11:28:59,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 06:29:57] 2026-01-08 11:28:59,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 06:29:57] 2026-01-08 11:28:59,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:29:57] 2026-01-08 11:28:59,598 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 06:29:57] 2026-01-08 11:28:59,599 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 06:29:57] 2026-01-08 11:28:59,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:29:57] 2026-01-08 11:28:59,603 | INFO     | will abort loop
[2026-01-08 06:29:57] 2026-01-08 11:28:59,909 | INFO     | all job control threads have been joined
[2026-01-08 06:29:57] 2026-01-08 11:29:00,181 | INFO     | all data control threads have been joined
[2026-01-08 06:29:57] 2026-01-08 11:29:00,425 | INFO     | [job] retrieve thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,428 | INFO     | [job] queue monitor thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,492 | INFO     | all payload control threads have been joined
[2026-01-08 06:29:57] 2026-01-08 11:29:00,607 | INFO     | [job] job monitor thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,731 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,749 | INFO     | [payload] validate_post thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,796 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 06:29:57] 2026-01-08 11:29:00,915 | INFO     | [job] control thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:00,924 | INFO     | [payload] failed_post thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,037 | INFO     | [data] copytool_in thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,090 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,186 | INFO     | [data] control thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,281 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,429 | INFO     | [data] copytool_out thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,498 | INFO     | [payload] control thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:01,819 | INFO     | [job] validate thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:04,806 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 06:29:57] 2026-01-08 11:29:29,372 | INFO     | PID=7133 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 06:29:57] 2026-01-08 11:29:29,373 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 06:29:57] 2026-01-08 11:29:29,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 06:29:57] 2026-01-08 11:29:29,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 06:29:57] 2026-01-08 11:29:34,547 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-01-08 06:29:57] 2026-01-08 11:29:51,830 | INFO     | [monitor] cgroup control has ended
[2026-01-08 06:29:57] 2026-01-08 11:29:52,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260208953152)>', '<ExcThread(monitor, started 140259329304320)>']
[2026-01-08 06:29:57] 2026-01-08 11:29:52,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 06:29:57] 2026-01-08 11:29:52,476 | INFO     | [monitor] control thread has ended
[2026-01-08 06:29:57] 2026-01-08 11:29:57,370 | INFO     | all workflow threads have been joined
[2026-01-08 06:29:57] 2026-01-08 11:29:57,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 06:29:57] 2026-01-08 11:29:57,376 | INFO     | traces error code: 0
[2026-01-08 06:29:57] 2026-01-08 11:29:57,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 06:29:57] 2026-01-08 11:29:57,490 [wrapper] ==== pilot stdout END ====
[2026-01-08 06:29:57] 2026-01-08 11:29:57,494 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 06:29:57] 2026-01-08 11:29:57,499 [wrapper] pilotpid: 7133
[2026-01-08 06:29:57] 2026-01-08 11:29:57,503 [wrapper] Pilot exit status: 0
[2026-01-08 06:29:57] 2026-01-08 11:29:57,522 [wrapper] pandaids: 6962913517 6962913517
[2026-01-08 06:29:57] 2026-01-08 11:29:57,574 [wrapper] cleanup supervisor_pilot 30337 7134
[2026-01-08 06:29:57] 2026-01-08 11:29:57,579 [wrapper] Test setup, not cleaning
[2026-01-08 06:29:57] 2026-01-08 11:29:57,583 [wrapper] apfmon messages muted
[2026-01-08 06:29:57] 2026-01-08 11:29:57,588 [wrapper] ==== wrapper stdout END ====
[2026-01-08 06:29:57] 2026-01-08 11:29:57,592 [wrapper] ==== wrapper stderr END ====
[2026-01-08 06:29:57]  *** Error codes and diagnostics ***
[2026-01-08 06:29:57]     "exeErrorCode": 0,
[2026-01-08 06:29:57]     "exeErrorDiag": "",
[2026-01-08 06:29:57]     "pilotErrorCode": 0,
[2026-01-08 06:29:57]     "pilotErrorDiag": "",
[2026-01-08 06:29:57]  *** Listing of results directory ***
[2026-01-08 06:29:57] total 661484
[2026-01-08 06:29:57] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 02:56 pilot3.tar.gz
[2026-01-08 06:29:57] -rwx------ 1 boincer umatlas     36322 Jan  8 02:59 runpilot2-wrapper.sh
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 02:59 queuedata.json
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas       100 Jan  8 03:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 06:29:57] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 03:01 run_atlas
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas       105 Jan  8 03:01 job.xml
[2026-01-08 06:29:57] -rw-r--r-- 3 boincer umatlas 225057091 Jan  8 03:01 EVNT.47898824._000776.pool.root.1
[2026-01-08 06:29:57] -rw-r--r-- 3 boincer umatlas 225057091 Jan  8 03:01 ATLAS.root_0
[2026-01-08 06:29:57] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 03:01 input.tar.gz
[2026-01-08 06:29:57] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 03:01 start_atlas.sh
[2026-01-08 06:29:57] drwxrwx--x 2 boincer umatlas      4096 Jan  8 03:01 shared
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas         0 Jan  8 03:01 boinc_lockfile
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas      2518 Jan  8 03:29 pandaJob.out
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas        57 Jan  8 03:29 setup.sh.local
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas    989819 Jan  8 03:29 agis_schedconf.cvmfs.json
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas 219532834 Jan  8 06:28 HITS.47898826._016910.pool.root.1
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas      5909 Jan  8 06:28 init_data.xml
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas       531 Jan  8 06:28 boinc_task_state.xml
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas      1050 Jan  8 06:28 memory_monitor_summary.json
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas   1516240 Jan  8 06:28 agis_ddmendpoints.agis.ALL.json
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas    410676 Jan  8 06:28 log.47898826._016910.job.log.tgz.1
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas      7854 Jan  8 06:28 heartbeat.json
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas        96 Jan  8 06:29 pilot_heartbeat.json
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 06:29 boinc_mmap_file
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas        28 Jan  8 06:29 wrapper_checkpoint.txt
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas      4931 Jan  8 06:29 pilotlog.txt
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas   1488556 Jan  8 06:29 log.47898826._016910.job.log.1
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas       357 Jan  8 06:29 output.list
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas       620 Jan  8 06:29 runtime_log
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas   1914880 Jan  8 06:29 result.tar.gz
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas       788 Jan  8 06:29 vCrNDmm6zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcKjKDmz4zrFn.diag
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas      9428 Jan  8 06:29 runtime_log.err
[2026-01-08 06:29:57] -rw-r--r-- 1 boincer umatlas     23519 Jan  8 06:29 stderr.txt
[2026-01-08 06:29:57] HITS file was successfully produced:
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas 219532834 Jan  8 06:28 shared/HITS.pool.root.1
[2026-01-08 06:29:57]  *** Contents of shared directory: ***
[2026-01-08 06:29:57] total 436644
[2026-01-08 06:29:57] -rw-r--r-- 3 boincer umatlas 225057091 Jan  8 03:01 ATLAS.root_0
[2026-01-08 06:29:57] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 03:01 input.tar.gz
[2026-01-08 06:29:57] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 03:01 start_atlas.sh
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas 219532834 Jan  8 06:28 HITS.pool.root.1
[2026-01-08 06:29:57] -rw------- 1 boincer umatlas   1914880 Jan  8 06:29 result.tar.gz
06:29:58 (3080): run_atlas exited; CPU time 80228.652608
06:29:58 (3080): called boinc_finish(0)

</stderr_txt>
]]>

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