Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:58:09 (2771808): wrapper (7.7.26015): starting
02:58:09 (2771808): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 02:58:09] Arguments: --nthreads 12
[2026-01-08 02:58:09] Threads: 12
[2026-01-08 02:58:09] Checking for CVMFS
[2026-01-08 02:58:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 02:58:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 02:58:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 02:58:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 02:58:10] 2.13.3.0 11857 30951 237212 154896 3 13 28913317 32935937 9190 16776704 0 28067564 99.498 34422043 39069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 02:58:10] CVMFS is ok
[2026-01-08 02:58:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 02:58:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 02:58:10] Further information can be found at the LHC@home message board.
[2026-01-08 02:58:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 02:58:10] Checking for apptainer binary...
[2026-01-08 02:58:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 02:58:10] Running /usr/bin/apptainer --version
[2026-01-08 02:58:11] apptainer version 1.4.5-2.el9
[2026-01-08 02:58:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 02:58:11] c6-6-39-3.aglt2.org
[2026-01-08 02:58:11] apptainer works
[2026-01-08 02:58:11] Set ATHENA_PROC_NUMBER=12
[2026-01-08 02:58:11] Set ATHENA_CORE_NUMBER=12
[2026-01-08 02:58:11] Starting ATLAS job with PandaID=6962913707
[2026-01-08 02:58:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:27:54 (4053997): wrapper (7.7.26015): starting
12:27:54 (4053997): wrapper: running run_atlas (--nthreads 10)
[2026-01-08 12:27:54] Arguments: --nthreads 10
[2026-01-08 12:27:54] Threads: 10
[2026-01-08 12:27:54] This job has been restarted, cleaning up previous attempt
[2026-01-08 12:27:55] Checking for CVMFS
[2026-01-08 12:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:27:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:27:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:27:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:27:57] 2.13.3.0 11857 31521 237212 154915 2 65 29678227 32935936 8368 16776704 0 28765631 99.510 34445473 39053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 12:27:57] CVMFS is ok
[2026-01-08 12:27:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:27:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:27:57] Further information can be found at the LHC@home message board.
[2026-01-08 12:27:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:27:57] Checking for apptainer binary...
[2026-01-08 12:27:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:27:57] Running /usr/bin/apptainer --version
[2026-01-08 12:27:58] apptainer version 1.4.5-2.el9
[2026-01-08 12:27:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:27:59] c6-6-39-3.aglt2.org
[2026-01-08 12:27:59] apptainer works
[2026-01-08 12:27:59] Set ATHENA_PROC_NUMBER=10
[2026-01-08 12:27:59] Set ATHENA_CORE_NUMBER=10
[2026-01-08 12:27:59] Starting ATLAS job with PandaID=6962913707
[2026-01-08 12:27:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:00:26]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:00:26] 2026-01-09 02:00:08,003 | INFO     | executing command: lscpu
[2026-01-08 21:00:26] 2026-01-09 02:00:08,054 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 21:00:26] 2026-01-09 02:00:08,219 | INFO     | monitor loop #1821: job 0:6962913707 is in state 'finished'
[2026-01-08 21:00:26] 2026-01-09 02:00:08,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 21:00:26] 2026-01-09 02:00:09,989 | INFO     | time since job start (30651s) is within the limit (174528.0s)
[2026-01-08 21:00:26] 2026-01-09 02:00:10,723 | INFO     | monitor loop #1822: job 0:6962913707 is in state 'finished'
[2026-01-08 21:00:26] 2026-01-09 02:00:10,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 21:00:26] 2026-01-09 02:00:11,994 | INFO     | time since job start (30653s) is within the limit (174528.0s)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,115 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 21:00:26] 2026-01-09 02:00:12,124 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2873.6121249999997
[2026-01-08 21:00:26] 2026-01-09 02:00:12,137 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962913707/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,138 | INFO     | extracted standard info from prmon json
[2026-01-08 21:00:26] 2026-01-09 02:00:12,138 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 21:00:26] 2026-01-09 02:00:12,138 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 21:00:26] 2026-01-09 02:00:12,138 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:00:26] 2026-01-09 02:00:12,139 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:00:26] 2026-01-09 02:00:12,149 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:00:26] 2026-01-09 02:00:12,150 | INFO     | sum of square deviations: 38993185843.045685
[2026-01-08 21:00:26] 2026-01-09 02:00:12,157 | INFO     | sum of deviations: 47368216836.93214
[2026-01-08 21:00:26] 2026-01-09 02:00:12,157 | INFO     | mean x: 1767908708.6427145
[2026-01-08 21:00:26] 2026-01-09 02:00:12,157 | INFO     | mean y: 2614981.0499001998
[2026-01-08 21:00:26] 2026-01-09 02:00:12,157 | INFO     | intersect: -2145008539.5305307
[2026-01-08 21:00:26] 2026-01-09 02:00:12,158 | INFO     | chi2: 1.7283490773744656
[2026-01-08 21:00:26] 2026-01-09 02:00:12,159 | INFO     | sum of square deviations: 37837429820.95959
[2026-01-08 21:00:26] 2026-01-09 02:00:12,165 | INFO     | sum of deviations: 45508654072.71378
[2026-01-08 21:00:26] 2026-01-09 02:00:12,166 | INFO     | mean x: 1767908556.1491935
[2026-01-08 21:00:26] 2026-01-09 02:00:12,166 | INFO     | mean y: 2614735.9092741935
[2026-01-08 21:00:26] 2026-01-09 02:00:12,166 | INFO     | intersect: -2123722578.6145942
[2026-01-08 21:00:26] 2026-01-09 02:00:12,167 | INFO     | chi2: 1.7281107944621386
[2026-01-08 21:00:26] 2026-01-09 02:00:12,167 | INFO     | current chi2=1.7281107944621386 (change=0.013786735298233665 %)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,167 | INFO     | right removable region: 495
[2026-01-08 21:00:26] 2026-01-09 02:00:12,168 | INFO     | sum of square deviations: 37837233400.95962
[2026-01-08 21:00:26] 2026-01-09 02:00:12,174 | INFO     | sum of deviations: -43199176200.21366
[2026-01-08 21:00:26] 2026-01-09 02:00:12,174 | INFO     | mean x: 1767908861.1491935
[2026-01-08 21:00:26] 2026-01-09 02:00:12,174 | INFO     | mean y: 2626884.3407258065
[2026-01-08 21:00:26] 2026-01-09 02:00:12,175 | INFO     | intersect: 2021067439.6897368
[2026-01-08 21:00:26] 2026-01-09 02:00:12,175 | INFO     | chi2: 0.13639145960947538
[2026-01-08 21:00:26] 2026-01-09 02:00:12,176 | INFO     | current chi2=0.13639145960947538 (change=92.10856988354068 %)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,176 | INFO     | sum of square deviations: 36704411427.44595
[2026-01-08 21:00:26] 2026-01-09 02:00:12,182 | INFO     | sum of deviations: -49773392985.00018
[2026-01-08 21:00:26] 2026-01-09 02:00:12,182 | INFO     | mean x: 1767909013.6517313
[2026-01-08 21:00:26] 2026-01-09 02:00:12,183 | INFO     | mean y: 2627761.0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,183 | INFO     | intersect: 2400018883.104004
[2026-01-08 21:00:26] 2026-01-09 02:00:12,184 | INFO     | chi2: 0.11164307799300503
[2026-01-08 21:00:26] 2026-01-09 02:00:12,184 | INFO     | current chi2=0.11164307799300503 (change=18.145110908946553 %)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,184 | INFO     | left removable region: 20
[2026-01-08 21:00:26] 2026-01-09 02:00:12,185 | INFO     | sum of square deviations: 33231953726.749664
[2026-01-08 21:00:26] 2026-01-09 02:00:12,191 | INFO     | sum of deviations: -33958972715.63786
[2026-01-08 21:00:26] 2026-01-09 02:00:12,191 | INFO     | mean x: 1767909135.6589475
[2026-01-08 21:00:26] 2026-01-09 02:00:12,191 | INFO     | mean y: 2625277.6442105263
[2026-01-08 21:00:26] 2026-01-09 02:00:12,191 | INFO     | intersect: 1809211149.6401608
[2026-01-08 21:00:26] 2026-01-09 02:00:12,192 | INFO     | chi2: 0.09770440572614801
[2026-01-08 21:00:26] 2026-01-09 02:00:12,192 | INFO     | current memory leak: -1.02 B/s (using 475 data points, chi2=0.10)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,193 | INFO     | could have reported an average CPU frequency of 2868 MHz (20 samples)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | ..............................
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | . Timing measurements:
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | . get job = 0 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | . initial setup = 5 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | . payload setup = 13 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,194 | INFO     | . stage-in = 0 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,195 | INFO     | . payload execution = 30555 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,195 | INFO     | . stage-out = 2 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,195 | INFO     | . log creation = 0 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,195 | INFO     | ..............................
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | 
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | job summary report
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | --------------------------------------------------
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | PanDA job id: 6962913707
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | task id: 47898826
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | errors: (none)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | pilot state: finished 
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | transexitcode: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | exeerrorcode: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | exeerrordiag: 
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | exitcode: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,294 | INFO     | exitmsg: OK
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | cpuconsumptiontime: 57802 s
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | nevents: 400
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | neventsw: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | pid: 4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | pgrp: 4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | corecount: 10
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | event service: False
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | sizes: {0: 2283741, 1: 2283825, 2: 2284024, 13: 2284024, 24: 2284080, 35: 2284108, 39: 2284526, 46: 2284554, 30573: 2322680, 30576: 2331678, 30579: 2331734, 30585:
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | --------------------------------------------------
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | 
[2026-01-08 21:00:26] 2026-01-09 02:00:12,295 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 21:00:26] 2026-01-09 02:00:12,316 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,316 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,316 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,318 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,318 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:00:26] 2026-01-09 02:00:12,318 | INFO     | job 6962913707 has completed (purged errors)
[2026-01-08 21:00:26] 2026-01-09 02:00:12,318 | INFO     | overall cleanup function is called
[2026-01-08 21:00:26] 2026-01-09 02:00:13,327 | INFO     | --- collectZombieJob: --- 10, [4080478]
[2026-01-08 21:00:26] 2026-01-09 02:00:13,330 | INFO     | PID=4064598 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-08 21:00:26] 2026-01-09 02:00:13,330 | INFO     | zombie collector waiting for pid 4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:13,331 | INFO     | .. there are 9 such processes running
[2026-01-08 21:00:26] 2026-01-09 02:00:13,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:00:26] 2026-01-09 02:00:13,332 | INFO     | collected zombie processes
[2026-01-08 21:00:26] 2026-01-09 02:00:13,332 | INFO     | will attempt to kill all subprocesses of pid=4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:13,573 | INFO     | process IDs to be killed: [4080478] (in reverse order)
[2026-01-08 21:00:26] 2026-01-09 02:00:13,651 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:00:26] 2026-01-09 02:00:13,652 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:00:26] 2026-01-09 02:00:13,661 | INFO     | did not find any defunct processes belonging to 4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:13,671 | INFO     | did not find any defunct processes belonging to 4080478
[2026-01-08 21:00:26] 2026-01-09 02:00:13,671 | INFO     | ready for new job
[2026-01-08 21:00:26] 2026-01-09 02:00:13,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:00:26] 2026-01-09 02:00:13,674 | INFO     | ***************************************
[2026-01-08 21:00:26] 2026-01-09 02:00:13,674 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:00:26] 2026-01-09 02:00:13,675 | INFO     | ***************************************
[2026-01-08 21:00:26] 2026-01-09 02:00:13,675 | INFO     | 
[2026-01-08 21:00:26] 2026-01-09 02:00:13,678 | INFO     | architecture information:
[2026-01-08 21:00:26] 2026-01-09 02:00:13,678 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:00:26] 2026-01-09 02:00:13,692 | INFO     | cat /etc/os-release:
[2026-01-08 21:00:26] NAME="CentOS Linux"
[2026-01-08 21:00:26] VERSION="7 (Core)"
[2026-01-08 21:00:26] ID="centos"
[2026-01-08 21:00:26] ID_LIKE="rhel fedora"
[2026-01-08 21:00:26] VERSION_ID="7"
[2026-01-08 21:00:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:00:26] ANSI_COLOR="0;31"
[2026-01-08 21:00:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:00:26] HOME_URL="https://www.centos.org/"
[2026-01-08 21:00:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:00:26] 
[2026-01-08 21:00:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:00:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:00:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:00:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:00:26] 
[2026-01-08 21:00:26] 2026-01-09 02:00:13,692 | INFO     | ***************************************
[2026-01-08 21:00:26] 2026-01-09 02:00:14,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 21:00:26] 2026-01-09 02:00:14,212 | INFO     | sufficient remaining disk space (75417780224 B)
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | INFO     | update_server=False
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:00:26] 2026-01-09 02:00:14,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:00:26] 2026-01-09 02:00:14,214 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 21:00:26] 2026-01-09 02:00:14,214 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:00:26] 2026-01-09 02:00:14,214 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:00:26] 2026-01-09 02:00:14,214 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:00:26] 2026-01-09 02:00:14,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:00:26] 2026-01-09 02:00:14,233 | INFO     | aborting loop
[2026-01-08 21:00:26] 2026-01-09 02:00:14,286 | INFO     | all data control threads have been joined
[2026-01-08 21:00:26] 2026-01-09 02:00:14,852 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:00:26] 2026-01-09 02:00:15,175 | INFO     | all payload control threads have been joined
[2026-01-08 21:00:26] 2026-01-09 02:00:15,218 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,219 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,238 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,291 | INFO     | [data] control thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,380 | INFO     | all job control threads have been joined
[2026-01-08 21:00:26] 2026-01-09 02:00:15,452 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,531 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,617 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,859 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:15,993 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,180 | INFO     | [payload] control thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,220 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,320 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,387 | INFO     | [job] control thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,418 | INFO     | [job] validate thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,632 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:16,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:00:26] 2026-01-09 02:00:20,798 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:00:26] 2026-01-09 02:00:21,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643807971136)>', '<ExcThread(monitor, started 139643446081280)>']
[2026-01-08 21:00:26] 2026-01-09 02:00:21,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:00:26] 2026-01-09 02:00:21,249 | INFO     | [monitor] control thread has ended
[2026-01-08 21:00:26] 2026-01-09 02:00:26,263 | INFO     | all workflow threads have been joined
[2026-01-08 21:00:26] 2026-01-09 02:00:26,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:00:26] 2026-01-09 02:00:26,263 | INFO     | traces error code: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:26,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:00:26] 2026-01-09 02:00:26,392 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:00:26] 2026-01-09 02:00:26,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:00:26] 2026-01-09 02:00:26,397 [wrapper] pilotpid: 4064598
[2026-01-08 21:00:26] 2026-01-09 02:00:26,399 [wrapper] Pilot exit status: 0
[2026-01-08 21:00:26] 2026-01-09 02:00:26,409 [wrapper] pandaids: 6962913707 6962913707
[2026-01-08 21:00:26] 2026-01-09 02:00:26,466 [wrapper] cleanup supervisor_pilot  870327 4064599
[2026-01-08 21:00:26] 2026-01-09 02:00:26,469 [wrapper] Test setup, not cleaning
[2026-01-08 21:00:26] 2026-01-09 02:00:26,472 [wrapper] apfmon messages muted
[2026-01-08 21:00:26] 2026-01-09 02:00:26,474 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:00:26] 2026-01-09 02:00:26,476 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:00:26]  *** Error codes and diagnostics ***
[2026-01-08 21:00:26]     "exeErrorCode": 0,
[2026-01-08 21:00:26]     "exeErrorDiag": "",
[2026-01-08 21:00:26]     "pilotErrorCode": 0,
[2026-01-08 21:00:26]     "pilotErrorDiag": "",
[2026-01-08 21:00:26]  *** Listing of results directory ***
[2026-01-08 21:00:26] total 666544
[2026-01-08 21:00:26] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 02:56 queuedata.json
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 02:56 pilot3.tar.gz
[2026-01-08 21:00:26] -rwx------. 1 boincer umatlas     36322 Jan  8 02:56 runpilot2-wrapper.sh
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas       100 Jan  8 02:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:00:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 02:58 run_atlas
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas       105 Jan  8 02:58 job.xml
[2026-01-08 21:00:26] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 02:58 EVNT.47898824._000299.pool.root.1
[2026-01-08 21:00:26] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 02:58 ATLAS.root_0
[2026-01-08 21:00:26] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 02:58 start_atlas.sh
[2026-01-08 21:00:26] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 02:58 shared
[2026-01-08 21:00:26] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 02:58 input.tar.gz
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas         0 Jan  8 02:58 boinc_lockfile
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas      2518 Jan  8 12:27 pandaJob.out
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas        57 Jan  8 12:28 setup.sh.local
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas    989837 Jan  8 12:29 agis_schedconf.cvmfs.json
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas      6842 Jan  8 20:54 init_data.xml
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas        96 Jan  8 20:59 pilot_heartbeat.json
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas 221419379 Jan  8 20:59 HITS.47898826._017047.pool.root.1
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas       532 Jan  8 20:59 boinc_task_state.xml
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas      1033 Jan  8 20:59 memory_monitor_summary.json
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas   1516240 Jan  8 21:00 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas    700296 Jan  8 21:00 log.47898826._017047.job.log.tgz.1
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas      7812 Jan  8 21:00 heartbeat.json
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 21:00 boinc_mmap_file
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas        29 Jan  8 21:00 wrapper_checkpoint.txt
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas      4552 Jan  8 21:00 pilotlog.txt
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas   3782887 Jan  8 21:00 log.47898826._017047.job.log.1
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas       357 Jan  8 21:00 output.list
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas       620 Jan  8 21:00 runtime_log
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas   4505600 Jan  8 21:00 result.tar.gz
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas      9435 Jan  8 21:00 runtime_log.err
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas       787 Jan  8 21:00 6RuMDmr3zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5HjKDmrvsRNm.diag
[2026-01-08 21:00:26] -rw-r--r--. 1 boincer umatlas     23709 Jan  8 21:00 stderr.txt
[2026-01-08 21:00:26] HITS file was successfully produced:
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas 221419379 Jan  8 20:59 shared/HITS.pool.root.1
[2026-01-08 21:00:26]  *** Contents of shared directory: ***
[2026-01-08 21:00:26] total 440100
[2026-01-08 21:00:26] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 02:58 ATLAS.root_0
[2026-01-08 21:00:26] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 02:58 start_atlas.sh
[2026-01-08 21:00:26] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 02:58 input.tar.gz
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas 221419379 Jan  8 20:59 HITS.pool.root.1
[2026-01-08 21:00:26] -rw-------. 1 boincer umatlas   4505600 Jan  8 21:00 result.tar.gz
21:00:28 (4053997): run_atlas exited; CPU time 58590.748522
21:00:28 (4053997): called boinc_finish(0)

</stderr_txt>
]]>

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