Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:13:20 (2808706): wrapper (7.7.26015): starting
03:13:20 (2808706): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 03:13:20] Arguments: --nthreads 8
[2026-01-08 03:13:20] Threads: 8
[2026-01-08 03:13:20] Checking for CVMFS
[2026-01-08 03:13:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 03:13:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 03:13:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 03:13:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 03:13:22] 2.13.3.0 11857 30967 237440 154896 0 196 28941320 32935936 10106 16776704 0 28115826 99.499 34422113 39069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 03:13:22] CVMFS is ok
[2026-01-08 03:13:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 03:13:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 03:13:22] Further information can be found at the LHC@home message board.
[2026-01-08 03:13:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 03:13:22] Checking for apptainer binary...
[2026-01-08 03:13:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 03:13:22] Running /usr/bin/apptainer --version
[2026-01-08 03:13:22] apptainer version 1.4.5-2.el9
[2026-01-08 03:13:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 03:13:23] c6-6-39-3.aglt2.org
[2026-01-08 03:13:23] apptainer works
[2026-01-08 03:13:23] Set ATHENA_PROC_NUMBER=8
[2026-01-08 03:13:23] Set ATHENA_CORE_NUMBER=8
[2026-01-08 03:13:23] Starting ATLAS job with PandaID=6962913704
[2026-01-08 03:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:27:54 (4053998): wrapper (7.7.26015): starting
12:27:54 (4053998): wrapper: running run_atlas (--nthreads 10)
[2026-01-08 12:27:54] Arguments: --nthreads 10
[2026-01-08 12:27:54] Threads: 10
[2026-01-08 12:27:54] This job has been restarted, cleaning up previous attempt
[2026-01-08 12:27:54] Checking for CVMFS
[2026-01-08 12:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:27:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:27:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:27:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:27:57] 2.13.3.0 11857 31521 237212 154915 2 65 29678227 32935936 8368 16776704 0 28765631 99.510 34445473 39053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 12:27:57] CVMFS is ok
[2026-01-08 12:27:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:27:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:27:57] Further information can be found at the LHC@home message board.
[2026-01-08 12:27:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:27:57] Checking for apptainer binary...
[2026-01-08 12:27:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:27:57] Running /usr/bin/apptainer --version
[2026-01-08 12:27:57] apptainer version 1.4.5-2.el9
[2026-01-08 12:27:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:27:59] c6-6-39-3.aglt2.org
[2026-01-08 12:27:59] apptainer works
[2026-01-08 12:27:59] Set ATHENA_PROC_NUMBER=10
[2026-01-08 12:27:59] Set ATHENA_CORE_NUMBER=10
[2026-01-08 12:27:59] Starting ATLAS job with PandaID=6962913704
[2026-01-08 12:27:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 20:58:20]  *** The last 200 lines of the pilot log: ***
[2026-01-08 20:58:20] 2026-01-09 01:57:32,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,469 | INFO     | time since job start (30493s) is within the limit (174528.0s)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,703 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 20:58:20] 2026-01-09 01:57:32,721 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2916.577660714286
[2026-01-08 20:58:20] 2026-01-09 01:57:32,737 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962913704/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,751 | INFO     | extracted standard info from prmon json
[2026-01-08 20:58:20] 2026-01-09 01:57:32,751 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 20:58:20] 2026-01-09 01:57:32,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 20:58:20] 2026-01-09 01:57:32,756 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 20:58:20] 2026-01-09 01:57:32,756 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 20:58:20] 2026-01-09 01:57:32,773 | INFO     | fitting pss+swap vs Time
[2026-01-08 20:58:20] 2026-01-09 01:57:32,774 | INFO     | sum of square deviations: 38296637918.77126
[2026-01-08 20:58:20] 2026-01-09 01:57:32,784 | INFO     | sum of deviations: 21208541251.43371
[2026-01-08 20:58:20] 2026-01-09 01:57:32,784 | INFO     | mean x: 1767908617.120482
[2026-01-08 20:58:20] 2026-01-09 01:57:32,784 | INFO     | mean y: 2611442.859437751
[2026-01-08 20:58:20] 2026-01-09 01:57:32,784 | INFO     | intersect: -976450032.8370136
[2026-01-08 20:58:20] 2026-01-09 01:57:32,785 | INFO     | chi2: 2.548076847563083
[2026-01-08 20:58:20] 2026-01-09 01:57:32,795 | INFO     | sum of square deviations: 37154717703.57802
[2026-01-08 20:58:20] 2026-01-09 01:57:32,808 | INFO     | sum of deviations: 56664793173.37934
[2026-01-08 20:58:20] 2026-01-09 01:57:32,808 | INFO     | mean x: 1767908464.6247466
[2026-01-08 20:58:20] 2026-01-09 01:57:32,808 | INFO     | mean y: 2616139.0344827585
[2026-01-08 20:58:20] 2026-01-09 01:57:32,808 | INFO     | intersect: -2693627398.5063953
[2026-01-08 20:58:20] 2026-01-09 01:57:32,809 | INFO     | chi2: 1.7242935825175592
[2026-01-08 20:58:20] 2026-01-09 01:57:32,809 | INFO     | current chi2=1.7242935825175592 (change=32.32960834102666 %)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,810 | INFO     | sum of square deviations: 36035637688.622986
[2026-01-08 20:58:20] 2026-01-09 01:57:32,815 | INFO     | sum of deviations: 55884843327.36883
[2026-01-08 20:58:20] 2026-01-09 01:57:32,815 | INFO     | mean x: 1767908312.1229508
[2026-01-08 20:58:20] 2026-01-09 01:57:32,815 | INFO     | mean y: 2616032.743852459
[2026-01-08 20:58:20] 2026-01-09 01:57:32,815 | INFO     | intersect: -2739094267.871603
[2026-01-08 20:58:20] 2026-01-09 01:57:32,816 | INFO     | chi2: 1.7245087805120838
[2026-01-08 20:58:20] 2026-01-09 01:57:32,816 | INFO     | current chi2=1.7245087805120838 (change=-0.0124803569825058 %)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,816 | INFO     | right removable region: 487
[2026-01-08 20:58:20] 2026-01-09 01:57:32,817 | INFO     | sum of square deviations: 37154559469.326485
[2026-01-08 20:58:20] 2026-01-09 01:57:32,822 | INFO     | sum of deviations: -68572902861.920845
[2026-01-08 20:58:20] 2026-01-09 01:57:32,822 | INFO     | mean x: 1767908769.6267748
[2026-01-08 20:58:20] 2026-01-09 01:57:32,822 | INFO     | mean y: 2623385.7667342797
[2026-01-08 20:58:20] 2026-01-09 01:57:32,822 | INFO     | intersect: 3265497123.468796
[2026-01-08 20:58:20] 2026-01-09 01:57:32,823 | INFO     | chi2: 0.966634834289958
[2026-01-08 20:58:20] 2026-01-09 01:57:32,823 | INFO     | current chi2=0.966634834289958 (change=62.06414122814139 %)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,823 | INFO     | sum of square deviations: 36035471462.86663
[2026-01-08 20:58:20] 2026-01-09 01:57:32,828 | INFO     | sum of deviations: -71902524501.61685
[2026-01-08 20:58:20] 2026-01-09 01:57:32,829 | INFO     | mean x: 1767908922.1290984
[2026-01-08 20:58:20] 2026-01-09 01:57:32,829 | INFO     | mean y: 2623831.1209016396
[2026-01-08 20:58:20] 2026-01-09 01:57:32,829 | INFO     | intersect: 3530179026.86753
[2026-01-08 20:58:20] 2026-01-09 01:57:32,829 | INFO     | chi2: 0.9455073869330047
[2026-01-08 20:58:20] 2026-01-09 01:57:32,830 | INFO     | current chi2=0.9455073869330047 (change=2.1856699766538457 %)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,830 | INFO     | left removable region: 20
[2026-01-08 20:58:20] 2026-01-09 01:57:32,830 | INFO     | sum of square deviations: 31580737043.16934
[2026-01-08 20:58:20] 2026-01-09 01:57:32,835 | INFO     | sum of deviations: -19563454279.16276
[2026-01-08 20:58:20] 2026-01-09 01:57:32,835 | INFO     | mean x: 1767908891.627409
[2026-01-08 20:58:20] 2026-01-09 01:57:32,835 | INFO     | mean y: 2626353.7002141327
[2026-01-08 20:58:20] 2026-01-09 01:57:32,835 | INFO     | intersect: 1097800437.9465759
[2026-01-08 20:58:20] 2026-01-09 01:57:32,836 | INFO     | chi2: 0.09614237577299799
[2026-01-08 20:58:20] 2026-01-09 01:57:32,836 | INFO     | current memory leak: -0.62 B/s (using 467 data points, chi2=0.10)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | could have reported an average CPU frequency of 2865 MHz (20 samples)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | ..............................
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . Timing measurements:
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . get job = 0 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . initial setup = 4 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . payload setup = 13 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . stage-in = 0 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . payload execution = 30388 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . stage-out = 4 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | . log creation = 0 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,837 | INFO     | ..............................
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | 
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | job summary report
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | --------------------------------------------------
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | PanDA job id: 6962913704
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | task id: 47898826
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | errors: (none)
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | pilot state: finished 
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | transexitcode: 0
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | exeerrorcode: 0
[2026-01-08 20:58:20] 2026-01-09 01:57:32,929 | INFO     | exeerrordiag: 
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | exitcode: 0
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | exitmsg: OK
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | cpuconsumptiontime: 56987 s
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | nevents: 400
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | neventsw: 0
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | pid: 4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | pgrp: 4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | corecount: 10
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | event service: False
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | sizes: {0: 2283797, 1: 2283996, 2: 2283996, 13: 2284024, 24: 2284080, 35: 2284108, 38: 2284526, 46: 2284554, 30406: 2322597, 30407: 2322596, 30412: 2331678, 30414:
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | --------------------------------------------------
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | 
[2026-01-08 20:58:20] 2026-01-09 01:57:32,930 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 20:58:20] 2026-01-09 01:57:33,140 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,140 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,140 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,140 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,141 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,142 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 20:58:20] 2026-01-09 01:57:33,142 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,142 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 20:58:20] 2026-01-09 01:57:33,142 | INFO     | job 6962913704 has completed (purged errors)
[2026-01-08 20:58:20] 2026-01-09 01:57:33,142 | INFO     | overall cleanup function is called
[2026-01-08 20:58:20] 2026-01-09 01:57:34,155 | INFO     | --- collectZombieJob: --- 10, [4080457]
[2026-01-08 20:58:20] 2026-01-09 01:57:34,159 | INFO     | zombie collector waiting for pid 4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:34,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 20:58:20] 2026-01-09 01:57:34,159 | INFO     | collected zombie processes
[2026-01-08 20:58:20] 2026-01-09 01:57:34,159 | INFO     | will attempt to kill all subprocesses of pid=4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:34,622 | INFO     | process IDs to be killed: [4080457] (in reverse order)
[2026-01-08 20:58:20] 2026-01-09 01:57:34,774 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 20:58:20] 2026-01-09 01:57:34,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 20:58:20] 2026-01-09 01:57:34,804 | INFO     | did not find any defunct processes belonging to 4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:34,814 | INFO     | did not find any defunct processes belonging to 4080457
[2026-01-08 20:58:20] 2026-01-09 01:57:34,814 | INFO     | ready for new job
[2026-01-08 20:58:20] 2026-01-09 01:57:34,814 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 20:58:20] 2026-01-09 01:57:34,818 | INFO     | ***************************************
[2026-01-08 20:58:20] 2026-01-09 01:57:34,818 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 20:58:20] 2026-01-09 01:57:34,818 | INFO     | ***************************************
[2026-01-08 20:58:20] 2026-01-09 01:57:34,818 | INFO     | 
[2026-01-08 20:58:20] 2026-01-09 01:57:34,821 | INFO     | architecture information:
[2026-01-08 20:58:20] 2026-01-09 01:57:34,822 | INFO     | executing command: cat /etc/os-release
[2026-01-08 20:58:20] 2026-01-09 01:57:34,884 | INFO     | cat /etc/os-release:
[2026-01-08 20:58:20] NAME="CentOS Linux"
[2026-01-08 20:58:20] VERSION="7 (Core)"
[2026-01-08 20:58:20] ID="centos"
[2026-01-08 20:58:20] ID_LIKE="rhel fedora"
[2026-01-08 20:58:20] VERSION_ID="7"
[2026-01-08 20:58:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 20:58:20] ANSI_COLOR="0;31"
[2026-01-08 20:58:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 20:58:20] HOME_URL="https://www.centos.org/"
[2026-01-08 20:58:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 20:58:20] 
[2026-01-08 20:58:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 20:58:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 20:58:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 20:58:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 20:58:20] 
[2026-01-08 20:58:20] 2026-01-09 01:57:34,885 | INFO     | ***************************************
[2026-01-08 20:58:20] 2026-01-09 01:57:35,388 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 20:58:20] 2026-01-09 01:57:35,676 | INFO     | sufficient remaining disk space (74557947904 B)
[2026-01-08 20:58:20] 2026-01-09 01:57:35,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 20:58:20] 2026-01-09 01:57:35,677 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 20:58:20] 2026-01-09 01:57:35,677 | INFO     | update_server=False
[2026-01-08 20:58:20] 2026-01-09 01:57:35,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 20:58:20] 2026-01-09 01:57:35,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 20:58:20] 2026-01-09 01:57:35,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:58:20] 2026-01-09 01:57:35,707 | INFO     | aborting loop
[2026-01-08 20:58:20] 2026-01-09 01:57:36,064 | INFO     | all payload control threads have been joined
[2026-01-08 20:58:20] 2026-01-09 01:57:36,242 | INFO     | all data control threads have been joined
[2026-01-08 20:58:20] 2026-01-09 01:57:36,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 20:58:20] 2026-01-09 01:57:36,683 | INFO     | [job] retrieve thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:36,713 | INFO     | [job] job monitor thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:36,850 | INFO     | all job control threads have been joined
[2026-01-08 20:58:20] 2026-01-09 01:57:36,979 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,071 | INFO     | [payload] control thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,191 | INFO     | [payload] validate_post thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,248 | INFO     | [data] control thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,307 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,686 | INFO     | [data] copytool_out thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,835 | INFO     | [payload] failed_post thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,856 | INFO     | [job] control thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:37,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:58:20] 2026-01-09 01:57:38,020 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:38,024 | INFO     | [job] validate thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:38,031 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:38,140 | INFO     | [data] copytool_in thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:38,950 | INFO     | [job] queue monitor thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:57:40,477 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 20:58:20] 2026-01-09 01:58:05,838 | INFO     | PID=4064667 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 20:58:20] 2026-01-09 01:58:05,840 | INFO     | .. there are 9 such processes running
[2026-01-08 20:58:20] 2026-01-09 01:58:05,840 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 20:58:20] 2026-01-09 01:58:05,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 20:58:20] 2026-01-09 01:58:05,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 20:58:20] 2026-01-09 01:58:14,009 | INFO     | [monitor] cgroup control has ended
[2026-01-08 20:58:20] 2026-01-09 01:58:15,415 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312391788352)>', '<ExcThread(monitor, started 140311875544832)>']
[2026-01-08 20:58:20] 2026-01-09 01:58:15,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 20:58:20] 2026-01-09 01:58:15,893 | INFO     | [monitor] control thread has ended
[2026-01-08 20:58:20] 2026-01-09 01:58:20,440 | INFO     | all workflow threads have been joined
[2026-01-08 20:58:20] 2026-01-09 01:58:20,440 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 20:58:20] 2026-01-09 01:58:20,440 | INFO     | traces error code: 0
[2026-01-08 20:58:20] 2026-01-09 01:58:20,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 20:58:20] 2026-01-09 01:58:20,581 [wrapper] ==== pilot stdout END ====
[2026-01-08 20:58:20] 2026-01-09 01:58:20,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 20:58:20] 2026-01-09 01:58:20,587 [wrapper] pilotpid: 4064667
[2026-01-08 20:58:20] 2026-01-09 01:58:20,589 [wrapper] Pilot exit status: 0
[2026-01-08 20:58:20] 2026-01-09 01:58:20,599 [wrapper] pandaids: 6962913704 6962913704
[2026-01-08 20:58:20] 2026-01-09 01:58:20,656 [wrapper] cleanup supervisor_pilot  826498 4064668
[2026-01-08 20:58:20] 2026-01-09 01:58:20,659 [wrapper] Test setup, not cleaning
[2026-01-08 20:58:20] 2026-01-09 01:58:20,662 [wrapper] apfmon messages muted
[2026-01-08 20:58:20] 2026-01-09 01:58:20,665 [wrapper] ==== wrapper stdout END ====
[2026-01-08 20:58:20] 2026-01-09 01:58:20,668 [wrapper] ==== wrapper stderr END ====
[2026-01-08 20:58:20]  *** Error codes and diagnostics ***
[2026-01-08 20:58:20]     "exeErrorCode": 0,
[2026-01-08 20:58:20]     "exeErrorDiag": "",
[2026-01-08 20:58:20]     "pilotErrorCode": 0,
[2026-01-08 20:58:20]     "pilotErrorDiag": "",
[2026-01-08 20:58:20]  *** Listing of results directory ***
[2026-01-08 20:58:20] total 661992
[2026-01-08 20:58:20] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 02:56 queuedata.json
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 02:56 pilot3.tar.gz
[2026-01-08 20:58:20] -rwx------. 1 boincer umatlas     36322 Jan  8 02:56 runpilot2-wrapper.sh
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas       100 Jan  8 03:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 20:58:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 03:13 run_atlas
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas       105 Jan  8 03:13 job.xml
[2026-01-08 20:58:20] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 03:13 EVNT.47898824._000299.pool.root.1
[2026-01-08 20:58:20] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 03:13 ATLAS.root_0
[2026-01-08 20:58:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 03:13 start_atlas.sh
[2026-01-08 20:58:20] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 03:13 shared
[2026-01-08 20:58:20] -rw-r--r--. 2 boincer umatlas    592396 Jan  8 03:13 input.tar.gz
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas         0 Jan  8 03:13 boinc_lockfile
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas      2518 Jan  8 12:27 pandaJob.out
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas        57 Jan  8 12:28 setup.sh.local
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas    989837 Jan  8 12:29 agis_schedconf.cvmfs.json
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas      6842 Jan  8 20:54 init_data.xml
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas 216826988 Jan  8 20:56 HITS.47898826._017044.pool.root.1
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas       533 Jan  8 20:56 boinc_task_state.xml
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas      1044 Jan  8 20:57 memory_monitor_summary.json
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas   1516240 Jan  8 20:57 agis_ddmendpoints.agis.ALL.json
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas    693501 Jan  8 20:57 log.47898826._017044.job.log.tgz.1
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas      7827 Jan  8 20:57 heartbeat.json
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas        96 Jan  8 20:58 pilot_heartbeat.json
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 20:58 boinc_mmap_file
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas        29 Jan  8 20:58 wrapper_checkpoint.txt
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas      4823 Jan  8 20:58 pilotlog.txt
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas   3756589 Jan  8 20:58 log.47898826._017044.job.log.1
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas       357 Jan  8 20:58 output.list
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas       620 Jan  8 20:58 runtime_log
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas   4464640 Jan  8 20:58 result.tar.gz
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas       787 Jan  8 20:58 ZUqMDmr3zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2HjKDmlsrbwm.diag
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas      9435 Jan  8 20:58 runtime_log.err
[2026-01-08 20:58:20] -rw-r--r--. 1 boincer umatlas     23414 Jan  8 20:58 stderr.txt
[2026-01-08 20:58:20] HITS file was successfully produced:
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas 216826988 Jan  8 20:56 shared/HITS.pool.root.1
[2026-01-08 20:58:20]  *** Contents of shared directory: ***
[2026-01-08 20:58:20] total 435576
[2026-01-08 20:58:20] -rw-r--r--. 3 boincer umatlas 224117582 Jan  8 03:13 ATLAS.root_0
[2026-01-08 20:58:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 03:13 start_atlas.sh
[2026-01-08 20:58:20] -rw-r--r--. 2 boincer umatlas    592396 Jan  8 03:13 input.tar.gz
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas 216826988 Jan  8 20:56 HITS.pool.root.1
[2026-01-08 20:58:20] -rw-------. 1 boincer umatlas   4464640 Jan  8 20:58 result.tar.gz
20:58:22 (4053998): run_atlas exited; CPU time 57771.552438
20:58:22 (4053998): called boinc_finish(0)

</stderr_txt>
]]>

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