Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:00:31 (949): wrapper (7.7.26015): starting
12:00:31 (949): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:00:31] Arguments: --nthreads 8
[2026-01-08 12:00:31] Threads: 8
[2026-01-08 12:00:31] Checking for CVMFS
[2026-01-08 12:00:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:00:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:00:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:00:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:00:35] 2.11.2.0 10325 33886 98120 154902 0 60 15394762 25165824 96 130560 0 14415458 99.834 9554449 4151 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 12:00:35] CVMFS is ok
[2026-01-08 12:00:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:00:35] Checking for apptainer binary...
[2026-01-08 12:00:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:00:35] Running /usr/bin/apptainer --version
[2026-01-08 12:00:35] apptainer version 1.3.2-1.el7
[2026-01-08 12:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:00:59] cg-vwn405.simple-grid.lan
[2026-01-08 12:00:59] apptainer works
[2026-01-08 12:00:59] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:00:59] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:00:59] Starting ATLAS job with PandaID=6962015740
[2026-01-08 12:00:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:13:58]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:13:58] 2026-01-08 17:12:45,910 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 18:13:58] 2026-01-08 17:12:45,911 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 18:13:58] 2026-01-08 17:12:45,913 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6962015740/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,913 | INFO     | extracted standard info from prmon json
[2026-01-08 18:13:58] 2026-01-08 17:12:45,913 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 18:13:58] 2026-01-08 17:12:45,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 18:13:58] 2026-01-08 17:12:45,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 18:13:58] 2026-01-08 17:12:45,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 18:13:58] 2026-01-08 17:12:45,921 | INFO     | fitting pss+swap vs Time
[2026-01-08 18:13:58] 2026-01-08 17:12:45,922 | INFO     | sum of square deviations: 13408995600.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,926 | INFO     | sum of deviations: 176198842880.99997
[2026-01-08 18:13:58] 2026-01-08 17:12:45,927 | INFO     | mean x: 1767881557.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,927 | INFO     | mean y: 2427844.247863248
[2026-01-08 18:13:58] 2026-01-08 17:12:45,927 | INFO     | intersect: -23228147657.921783
[2026-01-08 18:13:58] 2026-01-08 17:12:45,927 | INFO     | chi2: 7.846802812316401
[2026-01-08 18:13:58] 2026-01-08 17:12:45,928 | INFO     | sum of square deviations: 12844082682.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,941 | INFO     | sum of deviations: 219528566987.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,942 | INFO     | mean x: 1767881404.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,942 | INFO     | mean y: 2439432.4104046244
[2026-01-08 18:13:58] 2026-01-08 17:12:45,942 | INFO     | intersect: -30213846224.301765
[2026-01-08 18:13:58] 2026-01-08 17:12:45,943 | INFO     | chi2: 6.3542689457666
[2026-01-08 18:13:58] 2026-01-08 17:12:45,943 | INFO     | current chi2=6.3542689457666 (change=19.020917209836195 %)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,943 | INFO     | right removable region: 345
[2026-01-08 18:13:58] 2026-01-08 17:12:45,943 | INFO     | sum of square deviations: 12844082682.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,947 | INFO     | sum of deviations: 55706646340.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,948 | INFO     | mean x: 1767881709.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,948 | INFO     | mean y: 2460352.141618497
[2026-01-08 18:13:58] 2026-01-08 17:12:45,948 | INFO     | intersect: -7665098600.677748
[2026-01-08 18:13:58] 2026-01-08 17:12:45,949 | INFO     | chi2: 3.242221910862002
[2026-01-08 18:13:58] 2026-01-08 17:12:45,949 | INFO     | current chi2=3.242221910862002 (change=58.68098143395441 %)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,949 | INFO     | sum of square deviations: 12295263090.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,953 | INFO     | sum of deviations: -12335461784.999996
[2026-01-08 18:13:58] 2026-01-08 17:12:45,953 | INFO     | mean x: 1767881862.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,953 | INFO     | mean y: 2479204.2463343106
[2026-01-08 18:13:58] 2026-01-08 17:12:45,954 | INFO     | intersect: 1776141059.9924104
[2026-01-08 18:13:58] 2026-01-08 17:12:45,954 | INFO     | chi2: 1.6722863500065375
[2026-01-08 18:13:58] 2026-01-08 17:12:45,954 | INFO     | current chi2=1.6722863500065375 (change=48.421594943760944 %)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,955 | INFO     | sum of square deviations: 11762304260.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,968 | INFO     | sum of deviations: -25299483246.999996
[2026-01-08 18:13:58] 2026-01-08 17:12:45,968 | INFO     | mean x: 1767882014.5
[2026-01-08 18:13:58] 2026-01-08 17:12:45,969 | INFO     | mean y: 2482907.0833333335
[2026-01-08 18:13:58] 2026-01-08 17:12:45,969 | INFO     | intersect: 3805011767.0633044
[2026-01-08 18:13:58] 2026-01-08 17:12:45,969 | INFO     | chi2: 1.6191922487130754
[2026-01-08 18:13:58] 2026-01-08 17:12:45,969 | INFO     | current chi2=1.6191922487130754 (change=3.1749407805220966 %)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,970 | INFO     | left removable region: 30
[2026-01-08 18:13:58] 2026-01-08 17:12:45,970 | INFO     | sum of square deviations: 9691828230.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,974 | INFO     | sum of deviations: 20638575971.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,974 | INFO     | mean x: 1767882289.0
[2026-01-08 18:13:58] 2026-01-08 17:12:45,974 | INFO     | mean y: 2495189.784126984
[2026-01-08 18:13:58] 2026-01-08 17:12:45,974 | INFO     | intersect: -3762178725.5429792
[2026-01-08 18:13:58] 2026-01-08 17:12:45,975 | INFO     | chi2: 0.0011628677991876505
[2026-01-08 18:13:58] 2026-01-08 17:12:45,975 | INFO     | current memory leak: 2.13 B/s (using 315 data points, chi2=0.00)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | ..............................
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . Timing measurements:
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . get job = 1 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . initial setup = 11 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . payload setup = 176 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . stage-in = 0 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,976 | INFO     | . payload execution = 21532 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,977 | INFO     | . stage-out = 4 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,977 | INFO     | . log creation = 1 s
[2026-01-08 18:13:58] 2026-01-08 17:12:45,977 | INFO     | ..............................
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | 
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | job summary report
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | --------------------------------------------------
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | PanDA job id: 6962015740
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | task id: 47898826
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | errors: (none)
[2026-01-08 18:13:58] 2026-01-08 17:12:46,102 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | pilot state: finished 
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | transexitcode: 0
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | exeerrorcode: 0
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | exeerrordiag: 
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | exitcode: 0
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | exitmsg: OK
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | cpuconsumptiontime: 80773 s
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | nevents: 400
[2026-01-08 18:13:58] 2026-01-08 17:12:46,103 | INFO     | neventsw: 0
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | pid: 11211
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | pgrp: 11211
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | corecount: 8
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | event service: False
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | sizes: {0: 2283134, 1: 2283819, 2: 2284018, 13: 2284018, 23: 2284074, 34: 2284102, 45: 2284258, 56: 2284286, 66: 2284314, 77: 2284342, 88: 2284398, 98: 2284706, 10
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | --------------------------------------------------
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | 
[2026-01-08 18:13:58] 2026-01-08 17:12:46,104 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-08 18:13:58] 2026-01-08 17:12:46,478 | INFO     | time since job start (22057s) is within the limit (174528.0s)
[2026-01-08 18:13:58] 2026-01-08 17:12:46,639 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,639 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,639 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,639 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:13:58] 2026-01-08 17:12:46,641 | INFO     | job 6962015740 has completed (purged errors)
[2026-01-08 18:13:58] 2026-01-08 17:12:46,642 | INFO     | overall cleanup function is called
[2026-01-08 18:13:58] 2026-01-08 17:12:47,650 | INFO     | --- collectZombieJob: --- 10, [11211]
[2026-01-08 18:13:58] 2026-01-08 17:12:47,651 | INFO     | zombie collector waiting for pid 11211
[2026-01-08 18:13:58] 2026-01-08 17:12:47,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:13:58] 2026-01-08 17:12:47,651 | INFO     | collected zombie processes
[2026-01-08 18:13:58] 2026-01-08 17:12:47,651 | INFO     | will attempt to kill all subprocesses of pid=11211
[2026-01-08 18:13:58] 2026-01-08 17:12:47,731 | INFO     | process IDs to be killed: [11211] (in reverse order)
[2026-01-08 18:13:58] 2026-01-08 17:12:48,398 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:13:58] 2026-01-08 17:12:48,398 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:13:58] 2026-01-08 17:12:48,401 | INFO     | did not find any defunct processes belonging to 11211
[2026-01-08 18:13:58] 2026-01-08 17:12:48,402 | INFO     | did not find any defunct processes belonging to 11211
[2026-01-08 18:13:58] 2026-01-08 17:12:48,403 | INFO     | ready for new job
[2026-01-08 18:13:58] 2026-01-08 17:12:48,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:13:58] 2026-01-08 17:12:48,405 | INFO     | ***************************************
[2026-01-08 18:13:58] 2026-01-08 17:12:48,405 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:13:58] 2026-01-08 17:12:48,406 | INFO     | ***************************************
[2026-01-08 18:13:58] 2026-01-08 17:12:48,406 | INFO     | 
[2026-01-08 18:13:58] 2026-01-08 17:12:48,406 | INFO     | pilot is running in a VM
[2026-01-08 18:13:58] 2026-01-08 17:12:48,406 | INFO     | architecture information:
[2026-01-08 18:13:58] 2026-01-08 17:12:48,421 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:13:58] 2026-01-08 17:12:48,764 | INFO     | cat /etc/os-release:
[2026-01-08 18:13:58] NAME="CentOS Linux"
[2026-01-08 18:13:58] VERSION="7 (Core)"
[2026-01-08 18:13:58] ID="centos"
[2026-01-08 18:13:58] ID_LIKE="rhel fedora"
[2026-01-08 18:13:58] VERSION_ID="7"
[2026-01-08 18:13:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:13:58] ANSI_COLOR="0;31"
[2026-01-08 18:13:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:13:58] HOME_URL="https://www.centos.org/"
[2026-01-08 18:13:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:13:58] 
[2026-01-08 18:13:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:13:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:13:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:13:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:13:58] 
[2026-01-08 18:13:58] 2026-01-08 17:12:48,764 | INFO     | ***************************************
[2026-01-08 18:13:58] 2026-01-08 17:12:49,268 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-08 18:13:58] 2026-01-08 17:12:49,617 | INFO     | sufficient remaining disk space (496728276992 B)
[2026-01-08 18:13:58] 2026-01-08 17:12:49,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:13:58] 2026-01-08 17:12:49,617 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:13:58] 2026-01-08 17:12:49,618 | INFO     | update_server=False
[2026-01-08 18:13:58] 2026-01-08 17:12:49,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:13:58] 2026-01-08 17:12:49,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:13:58] 2026-01-08 17:12:49,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:13:58] 2026-01-08 17:12:49,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:13:58] 2026-01-08 17:12:49,625 | INFO     | aborting loop
[2026-01-08 18:13:58] 2026-01-08 17:12:49,663 | INFO     | all job control threads have been joined
[2026-01-08 18:13:58] 2026-01-08 17:12:49,957 | INFO     | all data control threads have been joined
[2026-01-08 18:13:58] 2026-01-08 17:12:50,623 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:50,631 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:50,669 | INFO     | [job] control thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:50,676 | INFO     | all payload control threads have been joined
[2026-01-08 18:13:58] 2026-01-08 17:12:50,846 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:50,963 | INFO     | [data] control thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,051 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:13:58] 2026-01-08 17:12:51,138 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,156 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,527 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,625 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,682 | INFO     | [payload] control thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:51,811 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:52,026 | INFO     | [job] validate thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:52,098 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:52,126 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:12:53,626 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:13:58] 2026-01-08 17:13:19,589 | INFO     | PID=4704 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:13:58] 2026-01-08 17:13:19,589 | INFO     | .. there are 2 such processes running
[2026-01-08 18:13:58] 2026-01-08 17:13:19,589 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:13:58] 2026-01-08 17:13:19,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:13:58] 2026-01-08 17:13:19,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:13:58] 2026-01-08 17:13:46,135 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:13:58] 2026-01-08 17:13:48,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538582062912)>', '<ExcThread(monitor, started 140538124670720)>']
[2026-01-08 18:13:58] 2026-01-08 17:13:48,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:13:58] 2026-01-08 17:13:48,764 | INFO     | [monitor] control thread has ended
[2026-01-08 18:13:58] 2026-01-08 17:13:53,117 | INFO     | all workflow threads have been joined
[2026-01-08 18:13:58] 2026-01-08 17:13:53,118 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:13:58] 2026-01-08 17:13:53,118 | INFO     | traces error code: 0
[2026-01-08 18:13:58] 2026-01-08 17:13:53,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:13:58] 2026-01-08 17:13:53,456 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:13:58] 2026-01-08 17:13:53,569 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:13:58] 2026-01-08 17:13:53,682 [wrapper] pilotpid: 4704
[2026-01-08 18:13:58] 2026-01-08 17:13:53,783 [wrapper] Pilot exit status: 0
[2026-01-08 18:13:58] 2026-01-08 17:13:54,254 [wrapper] pandaids: 6962015740
[2026-01-08 18:13:58] 2026-01-08 17:13:55,371 [wrapper] cleanup supervisor_pilot 10491 4705
[2026-01-08 18:13:58] 2026-01-08 17:13:55,476 [wrapper] Test setup, not cleaning
[2026-01-08 18:13:58] 2026-01-08 17:13:55,600 [wrapper] apfmon messages muted
[2026-01-08 18:13:58] 2026-01-08 17:13:55,709 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:13:58] 2026-01-08 17:13:55,847 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:13:58]  *** Error codes and diagnostics ***
[2026-01-08 18:13:58]     "exeErrorCode": 0,
[2026-01-08 18:13:58]     "exeErrorDiag": "",
[2026-01-08 18:13:58]     "pilotErrorCode": 0,
[2026-01-08 18:13:58]     "pilotErrorDiag": "",
[2026-01-08 18:13:58]  *** Listing of results directory ***
[2026-01-08 18:13:58] total 441440
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc    579449 Jan  7 16:25 pilot3.tar.gz
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc      5112 Jan  7 16:27 queuedata.json
[2026-01-08 18:13:58] -rwx------. 1 boinc boinc     36322 Jan  7 16:27 runpilot2-wrapper.sh
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc       100 Jan  8 12:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:13:58] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 12:00 run_atlas
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc       105 Jan  8 12:00 job.xml
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc      6390 Jan  8 12:00 init_data.xml
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc 224351730 Jan  8 12:00 EVNT.47898824._000378.pool.root.1
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:00 start_atlas.sh
[2026-01-08 18:13:58] drwxrwx--x. 2 boinc boinc        68 Jan  8 12:00 shared
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc    592392 Jan  8 12:00 input.tar.gz
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc         0 Jan  8 12:00 boinc_lockfile
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc      2515 Jan  8 12:00 pandaJob.out
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc    989835 Jan  8 12:05 agis_schedconf.cvmfs.json
[2026-01-08 18:13:58] drwx------. 5 boinc boinc      4096 Jan  8 12:05 pilot3
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc 216824899 Jan  8 18:09 HITS.47898826._009007.pool.root.1
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc       531 Jan  8 18:09 boinc_task_state.xml
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc      1012 Jan  8 18:10 memory_monitor_summary.json
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc   1516240 Jan  8 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc    543183 Jan  8 18:10 log.47898826._009007.job.log.tgz.1
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc        95 Jan  8 18:12 pilot_heartbeat.json
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc      7771 Jan  8 18:12 heartbeat.json
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc      8192 Jan  8 18:13 boinc_mmap_file
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc        28 Jan  8 18:13 wrapper_checkpoint.txt
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc      4883 Jan  8 18:13 pilotlog.txt
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc   2936125 Jan  8 18:13 log.47898826._009007.job.log.1
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc       357 Jan  8 18:13 output.list
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc       620 Jan  8 18:13 runtime_log
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc   3502080 Jan  8 18:13 result.tar.gz
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc      8817 Jan  8 18:13 runtime_log.err
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc       657 Jan  8 18:13 4AmLDmtckx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp1cKDmK3ZXWm.diag
[2026-01-08 18:13:58] -rw-r--r--. 1 boinc boinc     20709 Jan  8 18:13 stderr.txt
[2026-01-08 18:13:58] HITS file was successfully produced:
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc 216824899 Jan  8 18:09 shared/HITS.pool.root.1
[2026-01-08 18:13:58]  *** Contents of shared directory: ***
[2026-01-08 18:13:58] total 434856
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc 224351730 Jan  8 12:00 ATLAS.root_0
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:00 start_atlas.sh
[2026-01-08 18:13:58] -rw-r--r--. 2 boinc boinc    592392 Jan  8 12:00 input.tar.gz
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc 216824899 Jan  8 18:09 HITS.pool.root.1
[2026-01-08 18:13:58] -rw-------. 1 boinc boinc   3502080 Jan  8 18:13 result.tar.gz
18:14:00 (949): run_atlas exited; CPU time 80998.570776
18:14:00 (949): called boinc_finish(0)

</stderr_txt>
]]>

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