Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:55:00 (3289549): wrapper (7.7.26015): starting
11:55:00 (3289549): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 11:55:00] Arguments: --nthreads 3
[2026-01-08 11:55:00] Threads: 3
[2026-01-08 11:55:00] Checking for CVMFS
[2026-01-08 11:55:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:55:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:55:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:55:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:55:01] 2.9.2.0 3126343 671 65088 154902 2 56 15562102 36864000 0 130560 0 429358 99.986 28922 19103 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 11:55:01] CVMFS is ok
[2026-01-08 11:55:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 11:55:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 11:55:01] Further information can be found at the LHC@home message board.
[2026-01-08 11:55:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:55:01] Checking for apptainer binary...
[2026-01-08 11:55:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:55:01] Running /usr/bin/apptainer --version
[2026-01-08 11:55:01] apptainer version 1.4.1-1.1
[2026-01-08 11:55:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:55:01] thA373
[2026-01-08 11:55:01] apptainer works
[2026-01-08 11:55:01] Set ATHENA_PROC_NUMBER=3
[2026-01-08 11:55:01] Set ATHENA_CORE_NUMBER=3
[2026-01-08 11:55:01] Starting ATLAS job with PandaID=6962320487
[2026-01-08 11:55:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 13:46:20]  *** The last 200 lines of the pilot log: ***
[2026-01-08 13:46:20] ID="centos"
[2026-01-08 13:46:20] ID_LIKE="rhel fedora"
[2026-01-08 13:46:20] VERSION_ID="7"
[2026-01-08 13:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 13:46:20] ANSI_COLOR="0;31"
[2026-01-08 13:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 13:46:20] HOME_URL="https://www.centos.org/"
[2026-01-08 13:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 13:46:20] 
[2026-01-08 13:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 13:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 13:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 13:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 13:46:20] 
[2026-01-08 13:46:20] 2026-01-08 12:45:38,684 | INFO     | ***************************************
[2026-01-08 13:46:20] 2026-01-08 12:45:39,187 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | INFO     | sufficient remaining disk space (245081571328 B)
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | INFO     | update_server=False
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 13:46:20] 2026-01-08 12:45:39,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 13:46:20] 2026-01-08 12:45:39,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:46:20] 2026-01-08 12:45:39,563 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 13:46:20] 2026-01-08 12:45:39,563 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 13:46:20] 2026-01-08 12:45:39,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 13:46:20] 2026-01-08 12:45:39,563 | INFO     | will abort loop
[2026-01-08 13:46:20] 2026-01-08 12:45:39,965 | INFO     | all payload control threads have been joined
[2026-01-08 13:46:20] 2026-01-08 12:45:40,001 | INFO     | all data control threads have been joined
[2026-01-08 13:46:20] 2026-01-08 12:45:40,102 | INFO     | all job control threads have been joined
[2026-01-08 13:46:20] 2026-01-08 12:45:40,205 | INFO     | [job] retrieve thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,205 | INFO     | [job] queue monitor thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,210 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,217 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 13:46:20] 2026-01-08 12:45:40,568 | INFO     | [job] job monitor thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,600 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,757 | INFO     | [payload] failed_post thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:40,971 | INFO     | [payload] control thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,007 | INFO     | [data] control thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,108 | INFO     | [job] control thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,119 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,142 | INFO     | [data] copytool_in thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,334 | INFO     | [payload] validate_post thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:41,600 | INFO     | [job] validate thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:42,547 | INFO     | [data] copytool_out thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:45:43,206 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 13:46:20] 2026-01-08 12:46:09,123 | INFO     | 6633s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-08 13:46:20] 2026-01-08 12:46:10,178 | INFO     | PID=3293272 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 13:46:20] 2026-01-08 12:46:10,178 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 13:46:20] 2026-01-08 12:46:10,178 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 13:46:20] 2026-01-08 12:46:10,178 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 13:46:20] 2026-01-08 12:46:14,563 | INFO     | [monitor] cgroup control has ended
[2026-01-08 13:46:20] 2026-01-08 12:46:15,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282517309248)>', '<ExcThread(monitor, started 140282236471040)>']
[2026-01-08 13:46:20] 2026-01-08 12:46:16,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 13:46:20] 2026-01-08 12:46:16,210 | INFO     | [monitor] control thread has ended
[2026-01-08 13:46:20] 2026-01-08 12:46:20,404 | INFO     | all workflow threads have been joined
[2026-01-08 13:46:20] 2026-01-08 12:46:20,405 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 13:46:20] 2026-01-08 12:46:20,405 | INFO     | traces error code: 0
[2026-01-08 13:46:20] 2026-01-08 12:46:20,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 13:46:20] 2026-01-08 12:46:20,455 [wrapper] ==== pilot stdout END ====
[2026-01-08 13:46:20] 2026-01-08 12:46:20,457 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 13:46:20] 2026-01-08 12:46:20,460 [wrapper] pilotpid: 3293272
[2026-01-08 13:46:20] 2026-01-08 12:46:20,462 [wrapper] Pilot exit status: 0
[2026-01-08 13:46:20] 2026-01-08 12:46:20,469 [wrapper] pandaids: 6962320487
[2026-01-08 13:46:20] 2026-01-08 12:46:20,485 [wrapper] cleanup supervisor_pilot 3314089 3293273
[2026-01-08 13:46:20] 2026-01-08 12:46:20,487 [wrapper] Test setup, not cleaning
[2026-01-08 13:46:20] 2026-01-08 12:46:20,490 [wrapper] apfmon messages muted
[2026-01-08 13:46:20] 2026-01-08 12:46:20,492 [wrapper] ==== wrapper stdout END ====
[2026-01-08 13:46:20] 2026-01-08 12:46:20,494 [wrapper] ==== wrapper stderr END ====
[2026-01-08 13:46:20]  *** Error codes and diagnostics ***
[2026-01-08 13:46:20]     "exeErrorCode": 0,
[2026-01-08 13:46:20]     "exeErrorDiag": "",
[2026-01-08 13:46:20]     "pilotErrorCode": 0,
[2026-01-08 13:46:20]     "pilotErrorDiag": "",
[2026-01-08 13:46:20]  *** Listing of results directory ***
[2026-01-08 13:46:20] total 438780
[2026-01-08 13:46:20] -rwx------ 1 boinc boinc     36322 Jan  7 22:00 runpilot2-wrapper.sh
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc       100 Jan  8 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 13:46:20] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 11:55 run_atlas
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc       105 Jan  8 11:55 job.xml
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc 224522243 Jan  8 11:55 EVNT.47898824._000669.pool.root.1
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc    592400 Jan  8 11:55 input.tar.gz
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:55 start_atlas.sh
[2026-01-08 13:46:20] drwxrwx--x 2 boinc boinc      4096 Jan  8 11:55 shared
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:55 boinc_setup_complete
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      6439 Jan  8 11:55 init_data.xml
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc         0 Jan  8 11:55 boinc_lockfile
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      2519 Jan  8 11:55 pandaJob.out
[2026-01-08 13:46:20] -rw------- 1 boinc boinc    989835 Jan  8 11:55 agis_schedconf.cvmfs.json
[2026-01-08 13:46:20] -rw------- 1 boinc boinc   1516240 Jan  8 11:55 agis_ddmendpoints.agis.ALL.json
[2026-01-08 13:46:20] drwx------ 5 boinc boinc      4096 Jan  8 11:55 pilot3
[2026-01-08 13:46:20] -rw------- 1 boinc boinc 218419622 Jan  8 13:45 HITS.47898826._014300.pool.root.1
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc       529 Jan  8 13:45 boinc_task_state.xml
[2026-01-08 13:46:20] -rw------- 1 boinc boinc      1022 Jan  8 13:45 memory_monitor_summary.json
[2026-01-08 13:46:20] -rw------- 1 boinc boinc    273521 Jan  8 13:45 log.47898826._014300.job.log.tgz.1
[2026-01-08 13:46:20] -rw------- 1 boinc boinc      7769 Jan  8 13:45 heartbeat.json
[2026-01-08 13:46:20] -rw------- 1 boinc boinc        95 Jan  8 13:45 pilot_heartbeat.json
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc        27 Jan  8 13:46 wrapper_checkpoint.txt
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      8192 Jan  8 13:46 boinc_mmap_file
[2026-01-08 13:46:20] -rw------- 1 boinc boinc      5053 Jan  8 13:46 pilotlog.txt
[2026-01-08 13:46:20] -rw------- 1 boinc boinc    960495 Jan  8 13:46 log.47898826._014300.job.log.1
[2026-01-08 13:46:20] -rw------- 1 boinc boinc       357 Jan  8 13:46 output.list
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc       620 Jan  8 13:46 runtime_log
[2026-01-08 13:46:20] -rw------- 1 boinc boinc   1249280 Jan  8 13:46 result.tar.gz
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      8897 Jan  8 13:46 runtime_log.err
[2026-01-08 13:46:20] -rw------- 1 boinc boinc       659 Jan  8 13:46 aCMMDmhopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGpdKDms60Ubm.diag
[2026-01-08 13:46:20] -rw-r--r-- 1 boinc boinc      8989 Jan  8 13:46 stderr.txt
[2026-01-08 13:46:20] HITS file was successfully produced:
[2026-01-08 13:46:20] -rw------- 1 boinc boinc 218419622 Jan  8 13:45 shared/HITS.pool.root.1
[2026-01-08 13:46:20]  *** Contents of shared directory: ***
[2026-01-08 13:46:20] total 434392
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc 224522243 Jan  8 11:55 ATLAS.root_0
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc    592400 Jan  8 11:55 input.tar.gz
[2026-01-08 13:46:20] -rw-r--r-- 2 boinc boinc     15847 Jan  8 11:55 start_atlas.sh
[2026-01-08 13:46:20] -rw------- 1 boinc boinc 218419622 Jan  8 13:45 HITS.pool.root.1
[2026-01-08 13:46:20] -rw------- 1 boinc boinc   1249280 Jan  8 13:46 result.tar.gz
13:46:42 (3289549): run_atlas exited; CPU time 19181.646304
13:46:42 (3289549): called boinc_finish(0)

</stderr_txt>
]]>

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