Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:48:57 (18851): wrapper (7.7.26015): starting
13:48:57 (18851): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 13:48:57] Arguments: --nthreads 8
[2026-01-08 13:48:57] Threads: 8
[2026-01-08 13:48:57] Checking for CVMFS
[2026-01-08 13:48:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:48:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:49:00] 2.11.2.0 25330 33973 123712 154908 3 60 15774970 25165825 96 130560 0 15639416 99.790 10746252 3562 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 13:49:00] CVMFS is ok
[2026-01-08 13:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:49:00] Checking for apptainer binary...
[2026-01-08 13:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:49:00] Running /usr/bin/apptainer --version
[2026-01-08 13:49:01] apptainer version 1.3.2-1.el7
[2026-01-08 13:49:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:49:15] cg-vwn437.simple-grid.lan
[2026-01-08 13:49:15] apptainer works
[2026-01-08 13:49:15] Set ATHENA_PROC_NUMBER=8
[2026-01-08 13:49:15] Set ATHENA_CORE_NUMBER=8
[2026-01-08 13:49:15] Starting ATLAS job with PandaID=6962318655
[2026-01-08 13:49:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 19:52:56]  *** The last 200 lines of the pilot log: ***
[2026-01-08 19:52:56] 2026-01-08 18:51:52,759 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 19:52:56] 2026-01-08 18:51:52,760 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 19:52:56] 2026-01-08 18:51:52,762 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6962318655/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,763 | INFO     | extracted standard info from prmon json
[2026-01-08 19:52:56] 2026-01-08 18:51:52,763 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 19:52:56] 2026-01-08 18:51:52,763 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 19:52:56] 2026-01-08 18:51:52,764 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 19:52:56] 2026-01-08 18:51:52,764 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 19:52:56] 2026-01-08 18:51:52,771 | INFO     | fitting pss+swap vs Time
[2026-01-08 19:52:56] 2026-01-08 18:51:52,772 | INFO     | sum of square deviations: 12512874612.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,776 | INFO     | sum of deviations: 181990119807.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,776 | INFO     | mean x: 1767887751.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,777 | INFO     | mean y: 2430559.4606413995
[2026-01-08 19:52:56] 2026-01-08 18:51:52,777 | INFO     | intersect: -25710134585.343655
[2026-01-08 19:52:56] 2026-01-08 18:51:52,777 | INFO     | chi2: 8.454443130360044
[2026-01-08 19:52:56] 2026-01-08 18:51:52,778 | INFO     | sum of square deviations: 11973599384.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,782 | INFO     | sum of deviations: 224628149968.00006
[2026-01-08 19:52:56] 2026-01-08 18:51:52,782 | INFO     | mean x: 1767887598.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,782 | INFO     | mean y: 2442502.8579881657
[2026-01-08 19:52:56] 2026-01-08 18:51:52,782 | INFO     | intersect: -33163634618.153732
[2026-01-08 19:52:56] 2026-01-08 18:51:52,783 | INFO     | chi2: 6.963339925455422
[2026-01-08 19:52:56] 2026-01-08 18:51:52,783 | INFO     | current chi2=6.963339925455422 (change=17.63691803130174 %)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,783 | INFO     | right removable region: 337
[2026-01-08 19:52:56] 2026-01-08 18:51:52,784 | INFO     | sum of square deviations: 11973599384.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,788 | INFO     | sum of deviations: 66449363904.50001
[2026-01-08 19:52:56] 2026-01-08 18:51:52,788 | INFO     | mean x: 1767887903.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,788 | INFO     | mean y: 2463214.1272189347
[2026-01-08 19:52:56] 2026-01-08 18:51:52,788 | INFO     | intersect: -9808707417.997675
[2026-01-08 19:52:56] 2026-01-08 18:51:52,789 | INFO     | chi2: 3.976210449710732
[2026-01-08 19:52:56] 2026-01-08 18:51:52,789 | INFO     | current chi2=3.976210449710732 (change=52.96898461080074 %)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,789 | INFO     | sum of square deviations: 11450045382.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,793 | INFO     | sum of deviations: -16759253825.999996
[2026-01-08 19:52:56] 2026-01-08 18:51:52,793 | INFO     | mean x: 1767888056.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,794 | INFO     | mean y: 2487415.2522522523
[2026-01-08 19:52:56] 2026-01-08 18:51:52,794 | INFO     | intersect: 2590117741.419783
[2026-01-08 19:52:56] 2026-01-08 18:51:52,794 | INFO     | chi2: 1.7336835374565527
[2026-01-08 19:52:56] 2026-01-08 18:51:52,794 | INFO     | current chi2=1.7336835374565527 (change=56.39859712197383 %)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,795 | INFO     | sum of square deviations: 10941980042.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,799 | INFO     | sum of deviations: -30917028970.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,799 | INFO     | mean x: 1767888208.5
[2026-01-08 19:52:56] 2026-01-08 18:51:52,799 | INFO     | mean y: 2491656.0274390243
[2026-01-08 19:52:56] 2026-01-08 18:51:52,799 | INFO     | intersect: 4997734815.766319
[2026-01-08 19:52:56] 2026-01-08 18:51:52,800 | INFO     | chi2: 1.6498116959716624
[2026-01-08 19:52:56] 2026-01-08 18:51:52,800 | INFO     | current chi2=1.6498116959716624 (change=4.837782655993648 %)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,800 | INFO     | left removable region: 30
[2026-01-08 19:52:56] 2026-01-08 18:51:52,801 | INFO     | sum of square deviations: 8971993338.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,804 | INFO     | sum of deviations: 1089862661.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,804 | INFO     | mean x: 1767888483.0
[2026-01-08 19:52:56] 2026-01-08 18:51:52,804 | INFO     | mean y: 2508869.1140065147
[2026-01-08 19:52:56] 2026-01-08 18:51:52,804 | INFO     | intersect: -212243368.63822722
[2026-01-08 19:52:56] 2026-01-08 18:51:52,805 | INFO     | chi2: 0.005561136924028036
[2026-01-08 19:52:56] 2026-01-08 18:51:52,805 | INFO     | current memory leak: 0.12 B/s (using 307 data points, chi2=0.01)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,806 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 19:52:56] 2026-01-08 18:51:52,806 | INFO     | ..............................
[2026-01-08 19:52:56] 2026-01-08 18:51:52,806 | INFO     | . Timing measurements:
[2026-01-08 19:52:56] 2026-01-08 18:51:52,806 | INFO     | . get job = 0 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,806 | INFO     | . initial setup = 12 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | . payload setup = 143 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | . stage-in = 0 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | . payload execution = 21033 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | . stage-out = 5 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | . log creation = 1 s
[2026-01-08 19:52:56] 2026-01-08 18:51:52,807 | INFO     | ..............................
[2026-01-08 19:52:56] 2026-01-08 18:51:53,408 | INFO     | 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | job summary report
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | --------------------------------------------------
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | PanDA job id: 6962318655
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | task id: 47898826
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | errors: (none)
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | pilot state: finished 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | transexitcode: 0
[2026-01-08 19:52:56] 2026-01-08 18:51:53,409 | INFO     | exeerrorcode: 0
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | exeerrordiag: 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | exitcode: 0
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | exitmsg: OK
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | cpuconsumptiontime: 78708 s
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | nevents: 400
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | neventsw: 0
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | pid: 29090
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | pgrp: 29090
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | corecount: 8
[2026-01-08 19:52:56] 2026-01-08 18:51:53,410 | INFO     | event service: False
[2026-01-08 19:52:56] 2026-01-08 18:51:53,411 | INFO     | sizes: {0: 2283742, 1: 2283997, 12: 2283997, 23: 2284025, 33: 2284053, 44: 2284109, 55: 2284265, 66: 2284293, 77: 2284321, 87: 2284377, 98: 2284405, 107: 2284975, 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,411 | INFO     | --------------------------------------------------
[2026-01-08 19:52:56] 2026-01-08 18:51:53,411 | INFO     | 
[2026-01-08 19:52:56] 2026-01-08 18:51:53,411 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-08 19:52:56] 2026-01-08 18:51:54,079 | INFO     | time since job start (21526s) is within the limit (174528.0s)
[2026-01-08 19:52:56] 2026-01-08 18:51:54,094 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,094 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,094 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,094 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 19:52:56] 2026-01-08 18:51:54,096 | INFO     | job 6962318655 has completed (purged errors)
[2026-01-08 19:52:56] 2026-01-08 18:51:54,097 | INFO     | overall cleanup function is called
[2026-01-08 19:52:56] 2026-01-08 18:51:55,105 | INFO     | --- collectZombieJob: --- 10, [29090]
[2026-01-08 19:52:56] 2026-01-08 18:51:55,106 | INFO     | zombie collector waiting for pid 29090
[2026-01-08 19:52:56] 2026-01-08 18:51:55,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 19:52:56] 2026-01-08 18:51:55,106 | INFO     | collected zombie processes
[2026-01-08 19:52:56] 2026-01-08 18:51:55,106 | INFO     | will attempt to kill all subprocesses of pid=29090
[2026-01-08 19:52:56] 2026-01-08 18:51:55,206 | INFO     | process IDs to be killed: [29090] (in reverse order)
[2026-01-08 19:52:56] 2026-01-08 18:51:55,998 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 19:52:56] 2026-01-08 18:51:55,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 19:52:56] 2026-01-08 18:51:56,000 | INFO     | did not find any defunct processes belonging to 29090
[2026-01-08 19:52:56] 2026-01-08 18:51:56,002 | INFO     | did not find any defunct processes belonging to 29090
[2026-01-08 19:52:56] 2026-01-08 18:51:56,002 | INFO     | ready for new job
[2026-01-08 19:52:56] 2026-01-08 18:51:56,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 19:52:56] 2026-01-08 18:51:56,005 | INFO     | ***************************************
[2026-01-08 19:52:56] 2026-01-08 18:51:56,005 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 19:52:56] 2026-01-08 18:51:56,005 | INFO     | ***************************************
[2026-01-08 19:52:56] 2026-01-08 18:51:56,005 | INFO     | 
[2026-01-08 19:52:56] 2026-01-08 18:51:56,006 | INFO     | pilot is running in a VM
[2026-01-08 19:52:56] 2026-01-08 18:51:56,006 | INFO     | architecture information:
[2026-01-08 19:52:56] 2026-01-08 18:51:56,025 | INFO     | executing command: cat /etc/os-release
[2026-01-08 19:52:56] 2026-01-08 18:51:56,305 | INFO     | cat /etc/os-release:
[2026-01-08 19:52:56] NAME="CentOS Linux"
[2026-01-08 19:52:56] VERSION="7 (Core)"
[2026-01-08 19:52:56] ID="centos"
[2026-01-08 19:52:56] ID_LIKE="rhel fedora"
[2026-01-08 19:52:56] VERSION_ID="7"
[2026-01-08 19:52:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 19:52:56] ANSI_COLOR="0;31"
[2026-01-08 19:52:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 19:52:56] HOME_URL="https://www.centos.org/"
[2026-01-08 19:52:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 19:52:56] 
[2026-01-08 19:52:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 19:52:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 19:52:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 19:52:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 19:52:56] 
[2026-01-08 19:52:56] 2026-01-08 18:51:56,305 | INFO     | ***************************************
[2026-01-08 19:52:56] 2026-01-08 18:51:56,809 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-08 19:52:56] 2026-01-08 18:51:57,059 | INFO     | sufficient remaining disk space (496238592000 B)
[2026-01-08 19:52:56] 2026-01-08 18:51:57,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 19:52:56] 2026-01-08 18:51:57,060 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 19:52:56] 2026-01-08 18:51:57,060 | INFO     | update_server=False
[2026-01-08 19:52:56] 2026-01-08 18:51:57,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 19:52:56] 2026-01-08 18:51:57,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:52:56] 2026-01-08 18:51:57,061 | INFO     | aborting loop
[2026-01-08 19:52:56] 2026-01-08 18:51:57,086 | INFO     | all payload control threads have been joined
[2026-01-08 19:52:56] 2026-01-08 18:51:57,630 | INFO     | all data control threads have been joined
[2026-01-08 19:52:56] 2026-01-08 18:51:57,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 19:52:56] 2026-01-08 18:51:57,749 | INFO     | all job control threads have been joined
[2026-01-08 19:52:56] 2026-01-08 18:51:58,015 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:52:56] 2026-01-08 18:51:58,066 | INFO     | [job] retrieve thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,067 | INFO     | [job] job monitor thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,093 | INFO     | [payload] control thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 19:52:56] 2026-01-08 18:51:58,402 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,636 | INFO     | [data] control thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,756 | INFO     | [job] control thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:58,763 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,014 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,021 | INFO     | [job] queue monitor thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,132 | INFO     | [job] validate thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,368 | INFO     | [data] copytool_in thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,559 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,608 | INFO     | [payload] failed_post thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:51:59,658 | INFO     | [payload] validate_post thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:52:00,227 | INFO     | [data] copytool_out thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:52:01,756 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 19:52:56] 2026-01-08 18:52:27,245 | INFO     | PID=22589 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 19:52:56] 2026-01-08 18:52:27,245 | INFO     | .. there are 2 such processes running
[2026-01-08 19:52:56] 2026-01-08 18:52:27,246 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 19:52:56] 2026-01-08 18:52:27,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 19:52:56] 2026-01-08 18:52:27,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 19:52:56] 2026-01-08 18:52:45,141 | INFO     | [monitor] cgroup control has ended
[2026-01-08 19:52:56] 2026-01-08 18:52:46,105 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195661748032)>', '<ExcThread(monitor, started 140195198375680)>']
[2026-01-08 19:52:56] 2026-01-08 18:52:46,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 19:52:56] 2026-01-08 18:52:46,360 | INFO     | [monitor] control thread has ended
[2026-01-08 19:52:56] 2026-01-08 18:52:51,131 | INFO     | all workflow threads have been joined
[2026-01-08 19:52:56] 2026-01-08 18:52:51,132 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 19:52:56] 2026-01-08 18:52:51,132 | INFO     | traces error code: 0
[2026-01-08 19:52:56] 2026-01-08 18:52:51,132 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 19:52:56] 2026-01-08 18:52:51,554 [wrapper] ==== pilot stdout END ====
[2026-01-08 19:52:56] 2026-01-08 18:52:51,645 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 19:52:56] 2026-01-08 18:52:51,741 [wrapper] pilotpid: 22589
[2026-01-08 19:52:56] 2026-01-08 18:52:51,837 [wrapper] Pilot exit status: 0
[2026-01-08 19:52:56] 2026-01-08 18:52:52,292 [wrapper] pandaids: 6962318655
[2026-01-08 19:52:56] 2026-01-08 18:52:52,962 [wrapper] cleanup supervisor_pilot 28295 22590
[2026-01-08 19:52:56] 2026-01-08 18:52:53,063 [wrapper] Test setup, not cleaning
[2026-01-08 19:52:56] 2026-01-08 18:52:53,191 [wrapper] apfmon messages muted
[2026-01-08 19:52:56] 2026-01-08 18:52:53,295 [wrapper] ==== wrapper stdout END ====
[2026-01-08 19:52:56] 2026-01-08 18:52:53,396 [wrapper] ==== wrapper stderr END ====
[2026-01-08 19:52:56]  *** Error codes and diagnostics ***
[2026-01-08 19:52:56]     "exeErrorCode": 0,
[2026-01-08 19:52:56]     "exeErrorDiag": "",
[2026-01-08 19:52:56]     "pilotErrorCode": 0,
[2026-01-08 19:52:56]     "pilotErrorDiag": "",
[2026-01-08 19:52:56]  *** Listing of results directory ***
[2026-01-08 19:52:56] total 442124
[2026-01-08 19:52:56] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc       100 Jan  8 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 19:52:56] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 13:48 run_atlas
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc       105 Jan  8 13:48 job.xml
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc      6390 Jan  8 13:48 init_data.xml
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc 226953148 Jan  8 13:48 EVNT.47898824._000557.pool.root.1
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:48 start_atlas.sh
[2026-01-08 19:52:56] drwxrwx--x. 2 boinc boinc        68 Jan  8 13:48 shared
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc    592404 Jan  8 13:48 input.tar.gz
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc         0 Jan  8 13:48 boinc_lockfile
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc      2519 Jan  8 13:49 pandaJob.out
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc    989843 Jan  8 13:52 agis_schedconf.cvmfs.json
[2026-01-08 19:52:56] drwx------. 5 boinc boinc      4096 Jan  8 13:53 pilot3
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc 215048236 Jan  8 19:48 HITS.47898826._012984.pool.root.1
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc       531 Jan  8 19:48 boinc_task_state.xml
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc      1016 Jan  8 19:49 memory_monitor_summary.json
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc   1516240 Jan  8 19:49 agis_ddmendpoints.agis.ALL.json
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc    555922 Jan  8 19:49 log.47898826._012984.job.log.tgz.1
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc      7777 Jan  8 19:51 heartbeat.json
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc        28 Jan  8 19:52 wrapper_checkpoint.txt
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc      8192 Jan  8 19:52 boinc_mmap_file
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc        95 Jan  8 19:52 pilot_heartbeat.json
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc      4884 Jan  8 19:52 pilotlog.txt
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc   2859576 Jan  8 19:52 log.47898826._012984.job.log.1
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc       357 Jan  8 19:52 output.list
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc       620 Jan  8 19:52 runtime_log
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc   3430400 Jan  8 19:52 result.tar.gz
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc      8817 Jan  8 19:52 runtime_log.err
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc       657 Jan  8 19:52 IIBMDmfnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7gdKDmH30bqm.diag
[2026-01-08 19:52:56] -rw-r--r--. 1 boinc boinc     20776 Jan  8 19:52 stderr.txt
[2026-01-08 19:52:56] HITS file was successfully produced:
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc 215048236 Jan  8 19:48 shared/HITS.pool.root.1
[2026-01-08 19:52:56]  *** Contents of shared directory: ***
[2026-01-08 19:52:56] total 435596
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc 226953148 Jan  8 13:48 ATLAS.root_0
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc     15847 Jan  8 13:48 start_atlas.sh
[2026-01-08 19:52:56] -rw-r--r--. 2 boinc boinc    592404 Jan  8 13:48 input.tar.gz
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc 215048236 Jan  8 19:48 HITS.pool.root.1
[2026-01-08 19:52:56] -rw-------. 1 boinc boinc   3430400 Jan  8 19:52 result.tar.gz
19:52:58 (18851): run_atlas exited; CPU time 78932.527619
19:52:58 (18851): called boinc_finish(0)

</stderr_txt>
]]>

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