Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:43 (1255010): wrapper (7.7.26015): starting
23:45:43 (1255010): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 23:45:43] Arguments: --nthreads 8
[2026-01-07 23:45:43] Threads: 8
[2026-01-07 23:45:43] Checking for CVMFS
[2026-01-07 23:45:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 23:45:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 23:45:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 23:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 23:45:46] 2.13.3.0 5955 52166 415536 154891 2 571 17923828 32935936 17602 16776704 0 112350893 99.336 229145196 41506 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 23:45:46] CVMFS is ok
[2026-01-07 23:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 23:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 23:45:46] Further information can be found at the LHC@home message board.
[2026-01-07 23:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 23:45:46] Checking for apptainer binary...
[2026-01-07 23:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 23:45:46] Running /usr/bin/apptainer --version
[2026-01-07 23:45:46] apptainer version 1.4.5-2.el9
[2026-01-07 23:45:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 23:45:48] c6-1-24-4.aglt2.org
[2026-01-07 23:45:48] apptainer works
[2026-01-07 23:45:48] Set ATHENA_PROC_NUMBER=8
[2026-01-07 23:45:48] Set ATHENA_CORE_NUMBER=8
[2026-01-07 23:45:48] Starting ATLAS job with PandaID=6962318817
[2026-01-07 23:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 05:50:11]  *** The last 200 lines of the pilot log: ***
[2026-01-08 05:50:11] 2026-01-08 10:49:03,803 | INFO     | PID=1261073 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-08 05:50:11] 2026-01-08 10:49:03,803 | INFO     | .. there are 16 such processes running
[2026-01-08 05:50:11] 2026-01-08 10:49:04,804 | INFO     | time since job start (21698s) is within the limit (174528.0s)
[2026-01-08 05:50:11] 2026-01-08 10:49:05,020 | INFO     | monitor loop #1338: job 0:6962318817 is in state 'finished'
[2026-01-08 05:50:11] 2026-01-08 10:49:05,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 05:50:11] 2026-01-08 10:49:06,811 | INFO     | time since job start (21700s) is within the limit (174528.0s)
[2026-01-08 05:50:11] 2026-01-08 10:49:07,565 | INFO     | monitor loop #1339: job 0:6962318817 is in state 'finished'
[2026-01-08 05:50:11] 2026-01-08 10:49:07,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 05:50:11] 2026-01-08 10:49:08,818 | INFO     | time since job start (21702s) is within the limit (174528.0s)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,077 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 05:50:11] 2026-01-08 10:49:09,081 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2813.190857142858
[2026-01-08 05:50:11] 2026-01-08 10:49:09,094 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962318817/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,094 | INFO     | extracted standard info from prmon json
[2026-01-08 05:50:11] 2026-01-08 10:49:09,094 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 05:50:11] 2026-01-08 10:49:09,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 05:50:11] 2026-01-08 10:49:09,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 05:50:11] 2026-01-08 10:49:09,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 05:50:11] 2026-01-08 10:49:09,100 | INFO     | fitting pss+swap vs Time
[2026-01-08 05:50:11] 2026-01-08 10:49:09,101 | INFO     | sum of square deviations: 13640092077.467392
[2026-01-08 05:50:11] 2026-01-08 10:49:09,104 | INFO     | sum of deviations: 99590431500.15881
[2026-01-08 05:50:11] 2026-01-08 10:49:09,104 | INFO     | mean x: 1767858572.1133144
[2026-01-08 05:50:11] 2026-01-08 10:49:09,104 | INFO     | mean y: 2478216.7960339943
[2026-01-08 05:50:11] 2026-01-08 10:49:09,104 | INFO     | intersect: -12905191103.036716
[2026-01-08 05:50:11] 2026-01-08 10:49:09,104 | INFO     | chi2: 3.3758988614122445
[2026-01-08 05:50:11] 2026-01-08 10:49:09,105 | INFO     | sum of square deviations: 13068667862.629301
[2026-01-08 05:50:11] 2026-01-08 10:49:09,107 | INFO     | sum of deviations: 120252673779.362
[2026-01-08 05:50:11] 2026-01-08 10:49:09,107 | INFO     | mean x: 1767858419.612069
[2026-01-08 05:50:11] 2026-01-08 10:49:09,108 | INFO     | mean y: 2483662.5804597703
[2026-01-08 05:50:11] 2026-01-08 10:49:09,108 | INFO     | intersect: -16264645019.266489
[2026-01-08 05:50:11] 2026-01-08 10:49:09,108 | INFO     | chi2: 2.672631475763146
[2026-01-08 05:50:11] 2026-01-08 10:49:09,108 | INFO     | current chi2=2.672631475763146 (change=20.832003994186586 %)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,108 | INFO     | right removable region: 347
[2026-01-08 05:50:11] 2026-01-08 10:49:09,109 | INFO     | sum of square deviations: 13068556841.181053
[2026-01-08 05:50:11] 2026-01-08 10:49:09,111 | INFO     | sum of deviations: 10450124280.9138
[2026-01-08 05:50:11] 2026-01-08 10:49:09,111 | INFO     | mean x: 1767858724.6293104
[2026-01-08 05:50:11] 2026-01-08 10:49:09,111 | INFO     | mean y: 2501948.557471264
[2026-01-08 05:50:11] 2026-01-08 10:49:09,111 | INFO     | intersect: -1411146368.390467
[2026-01-08 05:50:11] 2026-01-08 10:49:09,112 | INFO     | chi2: 0.8969915428938283
[2026-01-08 05:50:11] 2026-01-08 10:49:09,112 | INFO     | current chi2=0.8969915428938283 (change=73.42954929287814 %)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,112 | INFO     | sum of square deviations: 12513271520.559717
[2026-01-08 05:50:11] 2026-01-08 10:49:09,115 | INFO     | sum of deviations: -9647659160.183678
[2026-01-08 05:50:11] 2026-01-08 10:49:09,115 | INFO     | mean x: 1767858877.1370263
[2026-01-08 05:50:11] 2026-01-08 10:49:09,115 | INFO     | mean y: 2507457.4081632653
[2026-01-08 05:50:11] 2026-01-08 10:49:09,115 | INFO     | intersect: 1365516312.5984294
[2026-01-08 05:50:11] 2026-01-08 10:49:09,116 | INFO     | chi2: 0.7782361610822806
[2026-01-08 05:50:11] 2026-01-08 10:49:09,116 | INFO     | current chi2=0.7782361610822806 (change=13.23929782307927 %)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,116 | INFO     | left removable region: 20
[2026-01-08 05:50:11] 2026-01-08 10:49:09,116 | INFO     | sum of square deviations: 10842486262.354746
[2026-01-08 05:50:11] 2026-01-08 10:49:09,118 | INFO     | sum of deviations: 15856642719.00612
[2026-01-08 05:50:11] 2026-01-08 10:49:09,118 | INFO     | mean x: 1767858999.1529052
[2026-01-08 05:50:11] 2026-01-08 10:49:09,118 | INFO     | mean y: 2512200.519877676
[2026-01-08 05:50:11] 2026-01-08 10:49:09,119 | INFO     | intersect: -2582901130.7818093
[2026-01-08 05:50:11] 2026-01-08 10:49:09,119 | INFO     | chi2: 0.026225836620652893
[2026-01-08 05:50:11] 2026-01-08 10:49:09,119 | INFO     | current memory leak: 1.46 B/s (using 327 data points, chi2=0.03)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | could have reported an average CPU frequency of 2755 MHz (15 samples)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | ..............................
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . Timing measurements:
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . get job = 1 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . initial setup = 7 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . payload setup = 49 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . stage-in = 0 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . payload execution = 21528 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . stage-out = 3 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | . log creation = 0 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,120 | INFO     | ..............................
[2026-01-08 05:50:11] 2026-01-08 10:49:09,201 | INFO     | 
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | job summary report
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | --------------------------------------------------
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | PanDA job id: 6962318817
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | task id: 47898826
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | errors: (none)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | pilot state: finished 
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | transexitcode: 0
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | exeerrorcode: 0
[2026-01-08 05:50:11] 2026-01-08 10:49:09,202 | INFO     | exeerrordiag: 
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | exitcode: 0
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | exitmsg: OK
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | cpuconsumptiontime: 63038 s
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | nevents: 400
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | neventsw: 0
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | pid: 1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | pgrp: 1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | corecount: 8
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | event service: False
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | sizes: {0: 2283141, 1: 2283742, 2: 2283854, 3: 2283854, 4: 2284053, 5: 2284081, 16: 2284265, 27: 2284293, 39: 2284321, 50: 2284349, 51: 2284639, 61: 2284947, 21582
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | --------------------------------------------------
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | 
[2026-01-08 05:50:11] 2026-01-08 10:49:09,203 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 05:50:11] 2026-01-08 10:49:09,353 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,353 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,353 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,353 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,354 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,355 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,355 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 05:50:11] 2026-01-08 10:49:09,355 | INFO     | job 6962318817 has completed (purged errors)
[2026-01-08 05:50:11] 2026-01-08 10:49:09,355 | INFO     | overall cleanup function is called
[2026-01-08 05:50:11] 2026-01-08 10:49:10,368 | INFO     | --- collectZombieJob: --- 10, [1270821]
[2026-01-08 05:50:11] 2026-01-08 10:49:10,368 | INFO     | zombie collector waiting for pid 1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:10,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 05:50:11] 2026-01-08 10:49:10,369 | INFO     | collected zombie processes
[2026-01-08 05:50:11] 2026-01-08 10:49:10,369 | INFO     | will attempt to kill all subprocesses of pid=1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:10,972 | INFO     | process IDs to be killed: [1270821] (in reverse order)
[2026-01-08 05:50:11] 2026-01-08 10:49:11,069 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 05:50:11] 2026-01-08 10:49:11,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 05:50:11] 2026-01-08 10:49:11,091 | INFO     | did not find any defunct processes belonging to 1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:11,102 | INFO     | did not find any defunct processes belonging to 1270821
[2026-01-08 05:50:11] 2026-01-08 10:49:11,103 | INFO     | ready for new job
[2026-01-08 05:50:11] 2026-01-08 10:49:11,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 05:50:11] 2026-01-08 10:49:11,105 | INFO     | ***************************************
[2026-01-08 05:50:11] 2026-01-08 10:49:11,105 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 05:50:11] 2026-01-08 10:49:11,106 | INFO     | ***************************************
[2026-01-08 05:50:11] 2026-01-08 10:49:11,106 | INFO     | 
[2026-01-08 05:50:11] 2026-01-08 10:49:11,109 | INFO     | architecture information:
[2026-01-08 05:50:11] 2026-01-08 10:49:11,109 | INFO     | executing command: cat /etc/os-release
[2026-01-08 05:50:11] 2026-01-08 10:49:11,129 | INFO     | cat /etc/os-release:
[2026-01-08 05:50:11] NAME="CentOS Linux"
[2026-01-08 05:50:11] VERSION="7 (Core)"
[2026-01-08 05:50:11] ID="centos"
[2026-01-08 05:50:11] ID_LIKE="rhel fedora"
[2026-01-08 05:50:11] VERSION_ID="7"
[2026-01-08 05:50:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 05:50:11] ANSI_COLOR="0;31"
[2026-01-08 05:50:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 05:50:11] HOME_URL="https://www.centos.org/"
[2026-01-08 05:50:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 05:50:11] 
[2026-01-08 05:50:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 05:50:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 05:50:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 05:50:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 05:50:11] 
[2026-01-08 05:50:11] 2026-01-08 10:49:11,130 | INFO     | ***************************************
[2026-01-08 05:50:11] 2026-01-08 10:49:11,634 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 05:50:11] 2026-01-08 10:49:11,761 | INFO     | sufficient remaining disk space (75973525504 B)
[2026-01-08 05:50:11] 2026-01-08 10:49:11,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 05:50:11] 2026-01-08 10:49:11,761 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 05:50:11] 2026-01-08 10:49:11,761 | INFO     | update_server=False
[2026-01-08 05:50:11] 2026-01-08 10:49:11,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 05:50:11] 2026-01-08 10:49:11,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:50:11] 2026-01-08 10:49:11,762 | INFO     | aborting loop
[2026-01-08 05:50:11] 2026-01-08 10:49:11,763 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 05:50:11] 2026-01-08 10:49:11,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 05:50:11] 2026-01-08 10:49:12,261 | INFO     | all data control threads have been joined
[2026-01-08 05:50:11] 2026-01-08 10:49:12,274 | INFO     | all job control threads have been joined
[2026-01-08 05:50:11] 2026-01-08 10:49:12,353 | INFO     | all payload control threads have been joined
[2026-01-08 05:50:11] 2026-01-08 10:49:12,767 | INFO     | [job] retrieve thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:12,769 | INFO     | [job] job monitor thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,041 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,241 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,245 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,267 | INFO     | [data] control thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,280 | INFO     | [job] control thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,359 | INFO     | [payload] control thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,771 | INFO     | [data] copytool_out thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:13,978 | INFO     | [data] copytool_in thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:14,005 | INFO     | [payload] validate_post thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:14,099 | INFO     | [job] validate thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:14,215 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 05:50:11] 2026-01-08 10:49:14,343 | INFO     | [payload] failed_post thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:15,221 | INFO     | [job] queue monitor thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:15,806 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 05:50:11] 2026-01-08 10:49:42,897 | INFO     | PID=1261073 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 05:50:11] 2026-01-08 10:49:42,897 | INFO     | .. there are 16 such processes running
[2026-01-08 05:50:11] 2026-01-08 10:49:42,898 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 05:50:11] 2026-01-08 10:49:42,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 05:50:11] 2026-01-08 10:49:42,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 05:50:11] 2026-01-08 10:50:04,471 | INFO     | [monitor] cgroup control has ended
[2026-01-08 05:50:11] 2026-01-08 10:50:04,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930355111744)>', '<ExcThread(monitor, started 139929422128896)>']
[2026-01-08 05:50:11] 2026-01-08 10:50:05,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 05:50:11] 2026-01-08 10:50:05,029 | INFO     | [monitor] control thread has ended
[2026-01-08 05:50:11] 2026-01-08 10:50:09,535 | INFO     | all workflow threads have been joined
[2026-01-08 05:50:11] 2026-01-08 10:50:09,535 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 05:50:11] 2026-01-08 10:50:09,535 | INFO     | traces error code: 0
[2026-01-08 05:50:11] 2026-01-08 10:50:09,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 05:50:11] 2026-01-08 10:50:09,756 [wrapper] ==== pilot stdout END ====
[2026-01-08 05:50:11] 2026-01-08 10:50:09,760 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 05:50:11] 2026-01-08 10:50:09,763 [wrapper] pilotpid: 1261073
[2026-01-08 05:50:11] 2026-01-08 10:50:09,766 [wrapper] Pilot exit status: 0
[2026-01-08 05:50:11] 2026-01-08 10:50:09,936 [wrapper] pandaids: 6962318817
[2026-01-08 05:50:11] 2026-01-08 10:50:10,354 [wrapper] cleanup supervisor_pilot 2355694 1261074
[2026-01-08 05:50:11] 2026-01-08 10:50:10,378 [wrapper] Test setup, not cleaning
[2026-01-08 05:50:11] 2026-01-08 10:50:10,434 [wrapper] apfmon messages muted
[2026-01-08 05:50:11] 2026-01-08 10:50:10,500 [wrapper] ==== wrapper stdout END ====
[2026-01-08 05:50:11] 2026-01-08 10:50:10,540 [wrapper] ==== wrapper stderr END ====
[2026-01-08 05:50:11]  *** Error codes and diagnostics ***
[2026-01-08 05:50:11]     "exeErrorCode": 0,
[2026-01-08 05:50:11]     "exeErrorDiag": "",
[2026-01-08 05:50:11]     "pilotErrorCode": 0,
[2026-01-08 05:50:11]     "pilotErrorDiag": "",
[2026-01-08 05:50:11]  *** Listing of results directory ***
[2026-01-08 05:50:11] total 450772
[2026-01-08 05:50:11] -rwx------. 1 boincer umatlas     36322 Jan  7 15:59 runpilot2-wrapper.sh
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:02 queuedata.json
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas       100 Jan  7 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 05:50:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 23:45 run_atlas
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas       105 Jan  7 23:45 job.xml
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas 224703009 Jan  7 23:45 EVNT.47898824._000564.pool.root.1
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 23:45 start_atlas.sh
[2026-01-08 05:50:11] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 23:45 shared
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 23:45 input.tar.gz
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas         0 Jan  7 23:45 boinc_lockfile
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas      2519 Jan  7 23:45 pandaJob.out
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas        57 Jan  7 23:45 setup.sh.local
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas    989835 Jan  7 23:47 agis_schedconf.cvmfs.json
[2026-01-08 05:50:11] drwx------. 5 boincer umatlas      4096 Jan  7 23:47 pilot3
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas      6843 Jan  8 05:47 init_data.xml
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas 226431631 Jan  8 05:48 HITS.47898826._013146.pool.root.1
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas       530 Jan  8 05:48 boinc_task_state.xml
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas      1043 Jan  8 05:48 memory_monitor_summary.json
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas   1516240 Jan  8 05:48 agis_ddmendpoints.agis.ALL.json
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas    539993 Jan  8 05:48 log.47898826._013146.job.log.tgz.1
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas      7824 Jan  8 05:49 heartbeat.json
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas        95 Jan  8 05:49 pilot_heartbeat.json
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 05:50 boinc_mmap_file
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas        28 Jan  8 05:50 wrapper_checkpoint.txt
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas      4824 Jan  8 05:50 pilotlog.txt
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas   2727602 Jan  8 05:50 log.47898826._013146.job.log.1
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas       357 Jan  8 05:50 output.list
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas       620 Jan  8 05:50 runtime_log
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas   3287040 Jan  8 05:50 result.tar.gz
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas      9348 Jan  8 05:50 runtime_log.err
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas       658 Jan  8 05:50 f9PNDmhnpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnpiKDmw5ot2n.diag
[2026-01-08 05:50:11] -rw-r--r--. 1 boincer umatlas     21525 Jan  8 05:50 stderr.txt
[2026-01-08 05:50:11] HITS file was successfully produced:
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas 226431631 Jan  8 05:48 shared/HITS.pool.root.1
[2026-01-08 05:50:11]  *** Contents of shared directory: ***
[2026-01-08 05:50:11] total 444384
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas 224703009 Jan  7 23:45 ATLAS.root_0
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 23:45 start_atlas.sh
[2026-01-08 05:50:11] -rw-r--r--. 2 boincer umatlas    592398 Jan  7 23:45 input.tar.gz
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas 226431631 Jan  8 05:48 HITS.pool.root.1
[2026-01-08 05:50:11] -rw-------. 1 boincer umatlas   3287040 Jan  8 05:50 result.tar.gz
05:50:12 (1255010): run_atlas exited; CPU time 63763.177770
05:50:12 (1255010): called boinc_finish(0)

</stderr_txt>
]]>

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