Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:43 (5985): wrapper (7.7.26015): starting
14:22:43 (5985): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 14:22:43] Arguments: --nthreads 8
[2026-01-08 14:22:43] Threads: 8
[2026-01-08 14:22:43] Checking for CVMFS
[2026-01-08 14:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 14:22:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 14:22:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 14:22:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 14:22:46] 2.11.2.0 23641 34028 99420 154909 3 60 15817689 25165824 96 130560 0 15497763 99.803 8431625 3291 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 14:22:46] CVMFS is ok
[2026-01-08 14:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 14:22:46] Checking for apptainer binary...
[2026-01-08 14:22:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 14:22:46] Running /usr/bin/apptainer --version
[2026-01-08 14:22:46] apptainer version 1.3.2-1.el7
[2026-01-08 14:22:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 14:23:02] cg-vwn478.simple-grid.lan
[2026-01-08 14:23:02] apptainer works
[2026-01-08 14:23:02] Set ATHENA_PROC_NUMBER=8
[2026-01-08 14:23:02] Set ATHENA_CORE_NUMBER=8
[2026-01-08 14:23:02] Starting ATLAS job with PandaID=6962324102
[2026-01-08 14:23:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 19:00:34]  *** The last 200 lines of the pilot log: ***
[2026-01-08 19:00:34] 2026-01-08 17:59:55,952 | INFO     | extracted standard info from prmon json
[2026-01-08 19:00:34] 2026-01-08 17:59:55,953 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 19:00:34] 2026-01-08 17:59:55,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 19:00:34] 2026-01-08 17:59:55,953 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 19:00:34] 2026-01-08 17:59:55,953 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 19:00:34] 2026-01-08 17:59:55,959 | INFO     | fitting pss+swap vs Time
[2026-01-08 19:00:34] 2026-01-08 17:59:55,959 | INFO     | sum of square deviations: 5263458688.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,962 | INFO     | sum of deviations: 108824168604.00003
[2026-01-08 19:00:34] 2026-01-08 17:59:55,962 | INFO     | mean x: 1767887213.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,962 | INFO     | mean y: 2433316.1284046695
[2026-01-08 19:00:34] 2026-01-08 17:59:55,962 | INFO     | intersect: -36549360389.21391
[2026-01-08 19:00:34] 2026-01-08 17:59:55,962 | INFO     | chi2: 8.268338097416326
[2026-01-08 19:00:34] 2026-01-08 17:59:55,963 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,965 | INFO     | sum of deviations: 123409063003.50002
[2026-01-08 19:00:34] 2026-01-08 17:59:55,965 | INFO     | mean x: 1767887060.5
[2026-01-08 19:00:34] 2026-01-08 17:59:55,965 | INFO     | mean y: 2440562.630952381
[2026-01-08 19:00:34] 2026-01-08 17:59:55,965 | INFO     | intersect: -43964714454.02458
[2026-01-08 19:00:34] 2026-01-08 17:59:55,966 | INFO     | chi2: 7.570285734272525
[2026-01-08 19:00:34] 2026-01-08 17:59:55,966 | INFO     | current chi2=7.570285734272525 (change=8.442474834960208 %)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,966 | INFO     | right removable region: 251
[2026-01-08 19:00:34] 2026-01-08 17:59:55,967 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,969 | INFO     | sum of deviations: 20016205445.500004
[2026-01-08 19:00:34] 2026-01-08 17:59:55,969 | INFO     | mean x: 1767887365.5
[2026-01-08 19:00:34] 2026-01-08 17:59:55,969 | INFO     | mean y: 2478237.7023809524
[2026-01-08 19:00:34] 2026-01-08 17:59:55,969 | INFO     | intersect: -7128730265.77528
[2026-01-08 19:00:34] 2026-01-08 17:59:55,969 | INFO     | chi2: 3.3227522497562
[2026-01-08 19:00:34] 2026-01-08 17:59:55,970 | INFO     | current chi2=3.3227522497562 (change=59.81354160161294 %)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,970 | INFO     | sum of square deviations: 4672638308.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,988 | INFO     | sum of deviations: -40943163216.99999
[2026-01-08 19:00:34] 2026-01-08 17:59:55,989 | INFO     | mean x: 1767887518.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,989 | INFO     | mean y: 2510259.376518219
[2026-01-08 19:00:34] 2026-01-08 17:59:55,989 | INFO     | intersect: 15493310622.598427
[2026-01-08 19:00:34] 2026-01-08 17:59:55,989 | INFO     | chi2: 1.019492276321025
[2026-01-08 19:00:34] 2026-01-08 17:59:55,989 | INFO     | current chi2=1.019492276321025 (change=69.31783654963056 %)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,990 | INFO     | sum of square deviations: 4394577280.5
[2026-01-08 19:00:34] 2026-01-08 17:59:55,992 | INFO     | sum of deviations: -46574537976.000015
[2026-01-08 19:00:34] 2026-01-08 17:59:55,992 | INFO     | mean x: 1767887670.5
[2026-01-08 19:00:34] 2026-01-08 17:59:55,992 | INFO     | mean y: 2513300.5867768596
[2026-01-08 19:00:34] 2026-01-08 17:59:55,992 | INFO     | intersect: 18738911864.417755
[2026-01-08 19:00:34] 2026-01-08 17:59:55,993 | INFO     | chi2: 0.9545173976259929
[2026-01-08 19:00:34] 2026-01-08 17:59:55,993 | INFO     | current chi2=0.9545173976259929 (change=6.373258552728103 %)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,993 | INFO     | left removable region: 30
[2026-01-08 19:00:34] 2026-01-08 17:59:55,993 | INFO     | sum of square deviations: 3346927870.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,995 | INFO     | sum of deviations: -6806118248.999999
[2026-01-08 19:00:34] 2026-01-08 17:59:55,995 | INFO     | mean x: 1767887945.0
[2026-01-08 19:00:34] 2026-01-08 17:59:55,995 | INFO     | mean y: 2508241.0950226244
[2026-01-08 19:00:34] 2026-01-08 17:59:55,996 | INFO     | intersect: 3597582551.6303153
[2026-01-08 19:00:34] 2026-01-08 17:59:55,996 | INFO     | chi2: 0.08721191192815929
[2026-01-08 19:00:34] 2026-01-08 17:59:55,996 | INFO     | current memory leak: -2.03 B/s (using 221 data points, chi2=0.09)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,997 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-01-08 19:00:34] 2026-01-08 17:59:55,997 | INFO     | ..............................
[2026-01-08 19:00:34] 2026-01-08 17:59:55,997 | INFO     | . Timing measurements:
[2026-01-08 19:00:34] 2026-01-08 17:59:55,997 | INFO     | . get job = 0 s
[2026-01-08 19:00:34] 2026-01-08 17:59:55,997 | INFO     | . initial setup = 7 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | . payload setup = 141 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | . stage-in = 0 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | . payload execution = 15849 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | . stage-out = 3 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | . log creation = 1 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,004 | INFO     | ..............................
[2026-01-08 19:00:34] 2026-01-08 17:59:56,488 | INFO     | 
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | job summary report
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | --------------------------------------------------
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | PanDA job id: 6962324102
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | task id: 47898826
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | errors: (none)
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 19:00:34] 2026-01-08 17:59:56,489 | INFO     | pilot state: finished 
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | transexitcode: 0
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | exeerrorcode: 0
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | exeerrordiag: 
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | exitcode: 0
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | exitmsg: OK
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | cpuconsumptiontime: 73422 s
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | nevents: 400
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | neventsw: 0
[2026-01-08 19:00:34] 2026-01-08 17:59:56,490 | INFO     | pid: 16208
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | pgrp: 16208
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | corecount: 8
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | event service: False
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | sizes: {0: 2283742, 1: 2283997, 2: 2284025, 12: 2284025, 23: 2284053, 34: 2284081, 45: 2284237, 55: 2284265, 66: 2284293, 77: 2284321, 87: 2284377, 98: 2284685, 10
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | --------------------------------------------------
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | 
[2026-01-08 19:00:34] 2026-01-08 17:59:56,491 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-08 19:00:34] 2026-01-08 17:59:56,499 | INFO     | time since job start (16336s) is within the limit (174528.0s)
[2026-01-08 19:00:34] 2026-01-08 17:59:57,101 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,101 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,101 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,101 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | job 6962324102 has completed (purged errors)
[2026-01-08 19:00:34] 2026-01-08 17:59:57,103 | INFO     | overall cleanup function is called
[2026-01-08 19:00:34] 2026-01-08 17:59:58,112 | INFO     | --- collectZombieJob: --- 10, [16208]
[2026-01-08 19:00:34] 2026-01-08 17:59:58,113 | INFO     | zombie collector waiting for pid 16208
[2026-01-08 19:00:34] 2026-01-08 17:59:58,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 19:00:34] 2026-01-08 17:59:58,113 | INFO     | collected zombie processes
[2026-01-08 19:00:34] 2026-01-08 17:59:58,113 | INFO     | will attempt to kill all subprocesses of pid=16208
[2026-01-08 19:00:34] 2026-01-08 17:59:58,186 | INFO     | process IDs to be killed: [16208] (in reverse order)
[2026-01-08 19:00:34] 2026-01-08 17:59:59,251 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 19:00:34] 2026-01-08 17:59:59,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 19:00:34] 2026-01-08 17:59:59,254 | INFO     | did not find any defunct processes belonging to 16208
[2026-01-08 19:00:34] 2026-01-08 17:59:59,255 | INFO     | did not find any defunct processes belonging to 16208
[2026-01-08 19:00:34] 2026-01-08 17:59:59,256 | INFO     | ready for new job
[2026-01-08 19:00:34] 2026-01-08 17:59:59,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 19:00:34] 2026-01-08 17:59:59,258 | INFO     | ***************************************
[2026-01-08 19:00:34] 2026-01-08 17:59:59,258 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 19:00:34] 2026-01-08 17:59:59,258 | INFO     | ***************************************
[2026-01-08 19:00:34] 2026-01-08 17:59:59,258 | INFO     | 
[2026-01-08 19:00:34] 2026-01-08 17:59:59,259 | INFO     | pilot is running in a VM
[2026-01-08 19:00:34] 2026-01-08 17:59:59,259 | INFO     | architecture information:
[2026-01-08 19:00:34] 2026-01-08 17:59:59,267 | INFO     | executing command: cat /etc/os-release
[2026-01-08 19:00:34] 2026-01-08 17:59:59,626 | INFO     | cat /etc/os-release:
[2026-01-08 19:00:34] NAME="CentOS Linux"
[2026-01-08 19:00:34] VERSION="7 (Core)"
[2026-01-08 19:00:34] ID="centos"
[2026-01-08 19:00:34] ID_LIKE="rhel fedora"
[2026-01-08 19:00:34] VERSION_ID="7"
[2026-01-08 19:00:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 19:00:34] ANSI_COLOR="0;31"
[2026-01-08 19:00:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 19:00:34] HOME_URL="https://www.centos.org/"
[2026-01-08 19:00:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 19:00:34] 
[2026-01-08 19:00:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 19:00:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 19:00:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 19:00:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 19:00:34] 
[2026-01-08 19:00:34] 2026-01-08 17:59:59,626 | INFO     | ***************************************
[2026-01-08 19:00:34] 2026-01-08 18:00:00,129 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-08 19:00:34] 2026-01-08 18:00:00,166 | INFO     | sufficient remaining disk space (497398317056 B)
[2026-01-08 19:00:34] 2026-01-08 18:00:00,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 19:00:34] 2026-01-08 18:00:00,166 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 19:00:34] 2026-01-08 18:00:00,167 | INFO     | update_server=False
[2026-01-08 19:00:34] 2026-01-08 18:00:00,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 19:00:34] 2026-01-08 18:00:00,385 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 19:00:34] 2026-01-08 18:00:00,386 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 19:00:34] 2026-01-08 18:00:00,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:00:34] 2026-01-08 18:00:00,386 | INFO     | will abort loop
[2026-01-08 19:00:34] 2026-01-08 18:00:00,510 | INFO     | all data control threads have been joined
[2026-01-08 19:00:34] 2026-01-08 18:00:00,908 | INFO     | all job control threads have been joined
[2026-01-08 19:00:34] 2026-01-08 18:00:01,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 19:00:34] 2026-01-08 18:00:01,174 | INFO     | [job] retrieve thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,222 | INFO     | [payload] validate_post thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,253 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,392 | INFO     | [job] job monitor thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,517 | INFO     | [data] control thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,589 | INFO     | all payload control threads have been joined
[2026-01-08 19:00:34] 2026-01-08 18:00:01,619 | INFO     | [data] copytool_in thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 19:00:34] 2026-01-08 18:00:01,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 19:00:34] 2026-01-08 18:00:01,915 | INFO     | [job] control thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:01,953 | INFO     | [payload] failed_post thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,126 | INFO     | [job] validate thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,178 | INFO     | [job] queue monitor thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,192 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,290 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,340 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:02,596 | INFO     | [payload] control thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:03,672 | INFO     | [data] copytool_out thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:05,642 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 19:00:34] 2026-01-08 18:00:07,733 | INFO     | [monitor] cgroup control has ended
[2026-01-08 19:00:34] 2026-01-08 18:00:09,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692015454016)>', '<ExcThread(monitor, started 139691412133632)>']
[2026-01-08 19:00:34] 2026-01-08 18:00:14,275 | INFO     | all workflow threads have been joined
[2026-01-08 19:00:34] 2026-01-08 18:00:14,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 19:00:34] 2026-01-08 18:00:14,276 | INFO     | traces error code: 0
[2026-01-08 19:00:34] 2026-01-08 18:00:14,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 19:00:34] 2026-01-08 18:00:29,622 | INFO     | PID=9737 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 19:00:34] 2026-01-08 18:00:29,622 | INFO     | .. there are 2 such processes running
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | CRITICAL | thread 'MainThread' is not alive
[2026-01-08 19:00:34] 2026-01-08 18:00:29,623 | INFO     | [monitor] control thread has ended
[2026-01-08 19:00:34] 2026-01-08 18:00:30,006 [wrapper] ==== pilot stdout END ====
[2026-01-08 19:00:34] 2026-01-08 18:00:30,094 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 19:00:34] 2026-01-08 18:00:30,151 [wrapper] pilotpid: 9737
[2026-01-08 19:00:34] 2026-01-08 18:00:30,227 [wrapper] Pilot exit status: 0
[2026-01-08 19:00:34] 2026-01-08 18:00:30,761 [wrapper] pandaids: 6962324102
[2026-01-08 19:00:34] 2026-01-08 18:00:31,166 [wrapper] cleanup supervisor_pilot 26218 9738
[2026-01-08 19:00:34] 2026-01-08 18:00:31,230 [wrapper] Test setup, not cleaning
[2026-01-08 19:00:34] 2026-01-08 18:00:31,340 [wrapper] apfmon messages muted
[2026-01-08 19:00:34] 2026-01-08 18:00:31,460 [wrapper] ==== wrapper stdout END ====
[2026-01-08 19:00:34] 2026-01-08 18:00:31,568 [wrapper] ==== wrapper stderr END ====
[2026-01-08 19:00:34]  *** Error codes and diagnostics ***
[2026-01-08 19:00:34]     "exeErrorCode": 0,
[2026-01-08 19:00:34]     "exeErrorDiag": "",
[2026-01-08 19:00:34]     "pilotErrorCode": 0,
[2026-01-08 19:00:34]     "pilotErrorDiag": "",
[2026-01-08 19:00:34]  *** Listing of results directory ***
[2026-01-08 19:00:34] total 447572
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 19:00:34] -rwx------. 1 boinc boinc     36322 Jan  7 22:09 runpilot2-wrapper.sh
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:16 queuedata.json
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc       100 Jan  8 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 19:00:34] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 14:22 run_atlas
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc       105 Jan  8 14:22 job.xml
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc      6390 Jan  8 14:22 init_data.xml
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc 224744281 Jan  8 14:22 EVNT.47898824._000768.pool.root.1
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 14:22 start_atlas.sh
[2026-01-08 19:00:34] drwxrwx--x. 2 boinc boinc        68 Jan  8 14:22 shared
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc    592410 Jan  8 14:22 input.tar.gz
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc         0 Jan  8 14:22 boinc_lockfile
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc      2519 Jan  8 14:23 pandaJob.out
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc    989835 Jan  8 14:27 agis_schedconf.cvmfs.json
[2026-01-08 19:00:34] drwx------. 5 boinc boinc      4096 Jan  8 14:27 pilot3
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc 224325034 Jan  8 18:56 HITS.47898826._016614.pool.root.1
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc       531 Jan  8 18:56 boinc_task_state.xml
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc      1023 Jan  8 18:57 memory_monitor_summary.json
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc   1516240 Jan  8 18:57 agis_ddmendpoints.agis.ALL.json
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc    495265 Jan  8 18:57 log.47898826._016614.job.log.tgz.1
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc      7786 Jan  8 18:59 heartbeat.json
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc      8192 Jan  8 19:00 boinc_mmap_file
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc        28 Jan  8 19:00 wrapper_checkpoint.txt
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc        95 Jan  8 19:00 pilot_heartbeat.json
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc       889 Jan  8 19:00 pilotlog.txt
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc   2182803 Jan  8 19:00 log.47898826._016614.job.log.1
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc       357 Jan  8 19:00 output.list
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc       620 Jan  8 19:00 runtime_log
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc   2693120 Jan  8 19:00 result.tar.gz
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc      8817 Jan  8 19:00 runtime_log.err
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc       656 Jan  8 19:00 6zMODm0xpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUFjKDm4f6KXo.diag
[2026-01-08 19:00:34] -rw-r--r--. 1 boinc boinc     20710 Jan  8 19:00 stderr.txt
[2026-01-08 19:00:34] HITS file was successfully produced:
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc 224325034 Jan  8 18:56 shared/HITS.pool.root.1
[2026-01-08 19:00:34]  *** Contents of shared directory: ***
[2026-01-08 19:00:34] total 441776
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc 224744281 Jan  8 14:22 ATLAS.root_0
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc     15847 Jan  8 14:22 start_atlas.sh
[2026-01-08 19:00:34] -rw-r--r--. 2 boinc boinc    592410 Jan  8 14:22 input.tar.gz
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc 224325034 Jan  8 18:56 HITS.pool.root.1
[2026-01-08 19:00:34] -rw-------. 1 boinc boinc   2693120 Jan  8 19:00 result.tar.gz
19:00:35 (5985): run_atlas exited; CPU time 73573.029892
19:00:35 (5985): called boinc_finish(0)

</stderr_txt>
]]>

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