Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:10:23 (20404): wrapper (7.7.26015): starting
05:10:23 (20404): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:10:23] Arguments: --nthreads 8
[2026-01-08 05:10:23] Threads: 8
[2026-01-08 05:10:23] Checking for CVMFS
[2026-01-08 05:10:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:10:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:10:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:10:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:10:29] 2.11.2.0 30657 33476 99416 154889 2 11 21006630 25165824 96 130560 0 14468894 99.834 9280217 3244 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 05:10:29] CVMFS is ok
[2026-01-08 05:10:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:10:29] Checking for apptainer binary...
[2026-01-08 05:10:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:10:29] Running /usr/bin/apptainer --version
[2026-01-08 05:10:29] apptainer version 1.3.2-1.el7
[2026-01-08 05:10:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:12:02] cg-vwn434.simple-grid.lan
[2026-01-08 05:12:02] apptainer works
[2026-01-08 05:12:02] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:12:02] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:12:02] Starting ATLAS job with PandaID=6962319253
[2026-01-08 05:12:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 11:40:45]  *** The last 200 lines of the pilot log: ***
[2026-01-08 11:40:45] 2026-01-08 10:39:49,358 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 11:40:45] 2026-01-08 10:39:49,360 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6962319253/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,360 | INFO     | extracted standard info from prmon json
[2026-01-08 11:40:45] 2026-01-08 10:39:49,361 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 11:40:45] 2026-01-08 10:39:49,361 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 11:40:45] 2026-01-08 10:39:49,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 11:40:45] 2026-01-08 10:39:49,361 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 11:40:45] 2026-01-08 10:39:49,369 | INFO     | fitting pss+swap vs Time
[2026-01-08 11:40:45] 2026-01-08 10:39:49,386 | INFO     | sum of square deviations: 14954754815.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,391 | INFO     | sum of deviations: 185584516045.49997
[2026-01-08 11:40:45] 2026-01-08 10:39:49,391 | INFO     | mean x: 1767857561.5
[2026-01-08 11:40:45] 2026-01-08 10:39:49,391 | INFO     | mean y: 2452411.7554945056
[2026-01-08 11:40:45] 2026-01-08 10:39:49,391 | INFO     | intersect: -21936188110.740776
[2026-01-08 11:40:45] 2026-01-08 10:39:49,392 | INFO     | chi2: 9.455334774427868
[2026-01-08 11:40:45] 2026-01-08 10:39:49,393 | INFO     | sum of square deviations: 14346910860.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,397 | INFO     | sum of deviations: 206957374789.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,397 | INFO     | mean x: 1767857409.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,398 | INFO     | mean y: 2457706.4038997213
[2026-01-08 11:40:45] 2026-01-08 10:39:49,398 | INFO     | intersect: -25499277959.07604
[2026-01-08 11:40:45] 2026-01-08 10:39:49,398 | INFO     | chi2: 8.74848486091428
[2026-01-08 11:40:45] 2026-01-08 10:39:49,399 | INFO     | current chi2=8.74848486091428 (change=7.475673049940837 %)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,399 | INFO     | right removable region: 358
[2026-01-08 11:40:45] 2026-01-08 10:39:49,399 | INFO     | sum of square deviations: 14346910860.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,404 | INFO     | sum of deviations: 53549328545.00003
[2026-01-08 11:40:45] 2026-01-08 10:39:49,404 | INFO     | mean x: 1767857714.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,404 | INFO     | mean y: 2485530.562674095
[2026-01-08 11:40:45] 2026-01-08 10:39:49,404 | INFO     | intersect: -6595979774.727352
[2026-01-08 11:40:45] 2026-01-08 10:39:49,405 | INFO     | chi2: 4.197581105192639
[2026-01-08 11:40:45] 2026-01-08 10:39:49,410 | INFO     | current chi2=4.197581105192639 (change=55.60621379007038 %)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,411 | INFO     | sum of square deviations: 13755764892.5
[2026-01-08 11:40:45] 2026-01-08 10:39:49,415 | INFO     | sum of deviations: -48257974160.5
[2026-01-08 11:40:45] 2026-01-08 10:39:49,416 | INFO     | mean x: 1767857866.5
[2026-01-08 11:40:45] 2026-01-08 10:39:49,416 | INFO     | mean y: 2511772.1158192093
[2026-01-08 11:40:45] 2026-01-08 10:39:49,416 | INFO     | intersect: 6204510709.122125
[2026-01-08 11:40:45] 2026-01-08 10:39:49,417 | INFO     | chi2: 1.2336151396097443
[2026-01-08 11:40:45] 2026-01-08 10:39:49,417 | INFO     | current chi2=1.2336151396097443 (change=70.61128519747493 %)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,418 | INFO     | sum of square deviations: 13181084350.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,431 | INFO     | sum of deviations: -71267865809.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,431 | INFO     | mean x: 1767858019.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,432 | INFO     | mean y: 2517839.1203438397
[2026-01-08 11:40:45] 2026-01-08 10:39:49,432 | INFO     | intersect: 9561023400.725113
[2026-01-08 11:40:45] 2026-01-08 10:39:49,432 | INFO     | chi2: 0.9608074013790637
[2026-01-08 11:40:45] 2026-01-08 10:39:49,433 | INFO     | current chi2=0.9608074013790637 (change=22.11449336759791 %)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,433 | INFO     | left removable region: 30
[2026-01-08 11:40:45] 2026-01-08 10:39:49,433 | INFO     | sum of square deviations: 10941980042.0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,437 | INFO     | sum of deviations: -15947250739.999998
[2026-01-08 11:40:45] 2026-01-08 10:39:49,438 | INFO     | mean x: 1767858293.5
[2026-01-08 11:40:45] 2026-01-08 10:39:49,438 | INFO     | mean y: 2515205.451219512
[2026-01-08 11:40:45] 2026-01-08 10:39:49,438 | INFO     | intersect: 2579057967.4575667
[2026-01-08 11:40:45] 2026-01-08 10:39:49,439 | INFO     | chi2: 0.10690664669888858
[2026-01-08 11:40:45] 2026-01-08 10:39:49,439 | INFO     | current memory leak: -1.46 B/s (using 328 data points, chi2=0.11)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,440 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,440 | INFO     | ..............................
[2026-01-08 11:40:45] 2026-01-08 10:39:49,440 | INFO     | . Timing measurements:
[2026-01-08 11:40:45] 2026-01-08 10:39:49,440 | INFO     | . get job = 0 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,440 | INFO     | . initial setup = 13 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | . payload setup = 165 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | . stage-in = 0 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | . payload execution = 22349 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | . stage-out = 4 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | . log creation = 1 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,441 | INFO     | ..............................
[2026-01-08 11:40:45] 2026-01-08 10:39:49,650 | INFO     | time since job start (22856s) is within the limit (174528.0s)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,650 | INFO     | 22869s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-08 11:40:45] 2026-01-08 10:39:49,967 | INFO     | 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,967 | INFO     | job summary report
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | --------------------------------------------------
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | PanDA job id: 6962319253
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | task id: 47898826
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | errors: (none)
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | pilot state: finished 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | transexitcode: 0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | exeerrorcode: 0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,968 | INFO     | exeerrordiag: 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | exitcode: 0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | exitmsg: OK
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | cpuconsumptiontime: 83895 s
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | nevents: 400
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | neventsw: 0
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | pid: 30945
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | pgrp: 30945
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | corecount: 8
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | event service: False
[2026-01-08 11:40:45] 2026-01-08 10:39:49,969 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 22: 2284025, 33: 2284053, 44: 2284109, 54: 2284265, 65: 2284293, 76: 2284321, 87: 2284377, 97: 2284405, 101: 2284975, 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,970 | INFO     | --------------------------------------------------
[2026-01-08 11:40:45] 2026-01-08 10:39:49,970 | INFO     | 
[2026-01-08 11:40:45] 2026-01-08 10:39:49,970 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 11:40:45] 2026-01-08 10:39:50,564 | INFO     | job 6962319253 has completed (purged errors)
[2026-01-08 11:40:45] 2026-01-08 10:39:50,565 | INFO     | overall cleanup function is called
[2026-01-08 11:40:45] 2026-01-08 10:39:51,573 | INFO     | --- collectZombieJob: --- 10, [30945]
[2026-01-08 11:40:45] 2026-01-08 10:39:51,573 | INFO     | zombie collector waiting for pid 30945
[2026-01-08 11:40:45] 2026-01-08 10:39:51,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 11:40:45] 2026-01-08 10:39:51,574 | INFO     | collected zombie processes
[2026-01-08 11:40:45] 2026-01-08 10:39:51,574 | INFO     | will attempt to kill all subprocesses of pid=30945
[2026-01-08 11:40:45] 2026-01-08 10:39:51,666 | INFO     | process IDs to be killed: [30945] (in reverse order)
[2026-01-08 11:40:45] 2026-01-08 10:39:52,382 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 11:40:45] 2026-01-08 10:39:52,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 11:40:45] 2026-01-08 10:39:52,384 | INFO     | did not find any defunct processes belonging to 30945
[2026-01-08 11:40:45] 2026-01-08 10:39:52,386 | INFO     | did not find any defunct processes belonging to 30945
[2026-01-08 11:40:45] 2026-01-08 10:39:52,386 | INFO     | ready for new job
[2026-01-08 11:40:45] 2026-01-08 10:39:52,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 11:40:45] 2026-01-08 10:39:52,389 | INFO     | ***************************************
[2026-01-08 11:40:45] 2026-01-08 10:39:52,389 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 11:40:45] 2026-01-08 10:39:52,389 | INFO     | ***************************************
[2026-01-08 11:40:45] 2026-01-08 10:39:52,389 | INFO     | 
[2026-01-08 11:40:45] 2026-01-08 10:39:52,390 | INFO     | pilot is running in a VM
[2026-01-08 11:40:45] 2026-01-08 10:39:52,390 | INFO     | architecture information:
[2026-01-08 11:40:45] 2026-01-08 10:39:52,411 | INFO     | executing command: cat /etc/os-release
[2026-01-08 11:40:45] 2026-01-08 10:39:52,704 | INFO     | cat /etc/os-release:
[2026-01-08 11:40:45] NAME="CentOS Linux"
[2026-01-08 11:40:45] VERSION="7 (Core)"
[2026-01-08 11:40:45] ID="centos"
[2026-01-08 11:40:45] ID_LIKE="rhel fedora"
[2026-01-08 11:40:45] VERSION_ID="7"
[2026-01-08 11:40:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 11:40:45] ANSI_COLOR="0;31"
[2026-01-08 11:40:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 11:40:45] HOME_URL="https://www.centos.org/"
[2026-01-08 11:40:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 11:40:45] 
[2026-01-08 11:40:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 11:40:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 11:40:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 11:40:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 11:40:45] 
[2026-01-08 11:40:45] 2026-01-08 10:39:52,704 | INFO     | ***************************************
[2026-01-08 11:40:45] 2026-01-08 10:39:53,208 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-08 11:40:45] 2026-01-08 10:39:53,483 | INFO     | sufficient remaining disk space (496326672384 B)
[2026-01-08 11:40:45] 2026-01-08 10:39:53,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 11:40:45] 2026-01-08 10:39:53,483 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 11:40:45] 2026-01-08 10:39:53,483 | INFO     | update_server=False
[2026-01-08 11:40:45] 2026-01-08 10:39:53,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 11:40:45] 2026-01-08 10:39:53,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:40:45] 2026-01-08 10:39:53,484 | INFO     | aborting loop
[2026-01-08 11:40:45] 2026-01-08 10:39:53,519 | INFO     | all payload control threads have been joined
[2026-01-08 11:40:45] 2026-01-08 10:39:53,630 | INFO     | all job control threads have been joined
[2026-01-08 11:40:45] 2026-01-08 10:39:54,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 11:40:45] 2026-01-08 10:39:54,212 | INFO     | all data control threads have been joined
[2026-01-08 11:40:45] 2026-01-08 10:39:54,489 | INFO     | [job] job monitor thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,490 | INFO     | [job] retrieve thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,525 | INFO     | [payload] control thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,596 | INFO     | [payload] validate_post thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,612 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,636 | INFO     | [job] control thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,647 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 11:40:45] 2026-01-08 10:39:54,860 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:54,898 | INFO     | [job] validate thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,166 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,218 | INFO     | [data] control thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,600 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,647 | INFO     | [payload] failed_post thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,653 | INFO     | [job] queue monitor thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:55,734 | INFO     | [data] copytool_in thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:56,194 | INFO     | [data] copytool_out thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:39:56,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 11:40:45] 2026-01-08 10:40:00,265 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 11:40:45] 2026-01-08 10:40:22,840 | INFO     | PID=24454 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 11:40:45] 2026-01-08 10:40:22,840 | INFO     | .. there are 2 such processes running
[2026-01-08 11:40:45] 2026-01-08 10:40:22,840 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 11:40:45] 2026-01-08 10:40:22,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 11:40:45] 2026-01-08 10:40:22,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 11:40:45] 2026-01-08 10:40:32,705 | INFO     | [monitor] cgroup control has ended
[2026-01-08 11:40:45] 2026-01-08 10:40:34,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139710807021376)>', '<ExcThread(monitor, started 139709841925888)>']
[2026-01-08 11:40:45] 2026-01-08 10:40:34,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 11:40:45] 2026-01-08 10:40:34,913 | INFO     | [monitor] control thread has ended
[2026-01-08 11:40:45] 2026-01-08 10:40:39,643 | INFO     | all workflow threads have been joined
[2026-01-08 11:40:45] 2026-01-08 10:40:39,643 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 11:40:45] 2026-01-08 10:40:39,644 | INFO     | traces error code: 0
[2026-01-08 11:40:45] 2026-01-08 10:40:39,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 11:40:45] 2026-01-08 10:40:40,103 [wrapper] ==== pilot stdout END ====
[2026-01-08 11:40:45] 2026-01-08 10:40:40,200 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 11:40:45] 2026-01-08 10:40:40,309 [wrapper] pilotpid: 24454
[2026-01-08 11:40:45] 2026-01-08 10:40:40,368 [wrapper] Pilot exit status: 0
[2026-01-08 11:40:45] 2026-01-08 10:40:40,898 [wrapper] pandaids: 6962319253
[2026-01-08 11:40:45] 2026-01-08 10:40:42,113 [wrapper] cleanup supervisor_pilot 32654 24455
[2026-01-08 11:40:45] 2026-01-08 10:40:42,179 [wrapper] Test setup, not cleaning
[2026-01-08 11:40:45] 2026-01-08 10:40:42,236 [wrapper] apfmon messages muted
[2026-01-08 11:40:45] 2026-01-08 10:40:42,333 [wrapper] ==== wrapper stdout END ====
[2026-01-08 11:40:45] 2026-01-08 10:40:42,420 [wrapper] ==== wrapper stderr END ====
[2026-01-08 11:40:45]  *** Error codes and diagnostics ***
[2026-01-08 11:40:45]     "exeErrorCode": 0,
[2026-01-08 11:40:45]     "exeErrorDiag": "",
[2026-01-08 11:40:45]     "pilotErrorCode": 0,
[2026-01-08 11:40:45]     "pilotErrorDiag": "",
[2026-01-08 11:40:45]  *** Listing of results directory ***
[2026-01-08 11:40:45] total 447232
[2026-01-08 11:40:45] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc       100 Jan  8 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 11:40:45] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 05:10 run_atlas
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc       105 Jan  8 05:10 job.xml
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc      6390 Jan  8 05:10 init_data.xml
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc 224703009 Jan  8 05:10 EVNT.47898824._000564.pool.root.1
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:10 start_atlas.sh
[2026-01-08 11:40:45] drwxrwx--x. 2 boinc boinc        68 Jan  8 05:10 shared
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc    592401 Jan  8 05:10 input.tar.gz
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc         0 Jan  8 05:10 boinc_lockfile
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc      2519 Jan  8 05:12 pandaJob.out
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc    989835 Jan  8 05:18 agis_schedconf.cvmfs.json
[2026-01-08 11:40:45] drwx------. 5 boinc boinc      4096 Jan  8 05:18 pilot3
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc 222169373 Jan  8 11:36 HITS.47898826._013161.pool.root.1
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc       531 Jan  8 11:36 boinc_task_state.xml
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc      1015 Jan  8 11:37 memory_monitor_summary.json
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc   1516240 Jan  8 11:37 agis_ddmendpoints.agis.ALL.json
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc    577174 Jan  8 11:37 log.47898826._013161.job.log.tgz.1
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc        95 Jan  8 11:39 pilot_heartbeat.json
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc      7781 Jan  8 11:39 heartbeat.json
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc        28 Jan  8 11:40 wrapper_checkpoint.txt
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc      8192 Jan  8 11:40 boinc_mmap_file
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc      4884 Jan  8 11:40 pilotlog.txt
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc   3021313 Jan  8 11:40 log.47898826._013161.job.log.1
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc       357 Jan  8 11:40 output.list
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc       620 Jan  8 11:40 runtime_log
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc   3614720 Jan  8 11:40 result.tar.gz
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc      8817 Jan  8 11:40 runtime_log.err
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc       657 Jan  8 11:40 oWIODmhnpx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2piKDmiHEGEo.diag
[2026-01-08 11:40:45] -rw-r--r--. 1 boinc boinc     20814 Jan  8 11:40 stderr.txt
[2026-01-08 11:40:45] HITS file was successfully produced:
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc 222169373 Jan  8 11:36 shared/HITS.pool.root.1
[2026-01-08 11:40:45]  *** Contents of shared directory: ***
[2026-01-08 11:40:45] total 440532
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc 224703009 Jan  8 05:10 ATLAS.root_0
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc     15847 Jan  8 05:10 start_atlas.sh
[2026-01-08 11:40:45] -rw-r--r--. 2 boinc boinc    592401 Jan  8 05:10 input.tar.gz
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc 222169373 Jan  8 11:36 HITS.pool.root.1
[2026-01-08 11:40:45] -rw-------. 1 boinc boinc   3614720 Jan  8 11:40 result.tar.gz
11:40:46 (20404): run_atlas exited; CPU time 84133.349090
11:40:46 (20404): called boinc_finish(0)

</stderr_txt>
]]>

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