Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:44:31 (289257): wrapper (7.7.26015): starting
22:44:31 (289257): wrapper: running run_atlas (--nthreads 8)
[2026-01-07 22:44:31] Arguments: --nthreads 8
[2026-01-07 22:44:31] Threads: 8
[2026-01-07 22:44:31] Checking for CVMFS
[2026-01-07 22:44:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 22:44:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 22:44:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 22:44:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 22:44:35] 2.13.3.0 9955 91401 338716 154889 3 244 29063389 32935936 19617 16776704 0 420980730 99.711 314687046 33249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-07 22:44:35] CVMFS is ok
[2026-01-07 22:44:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 22:44:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 22:44:35] Further information can be found at the LHC@home message board.
[2026-01-07 22:44:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 22:44:35] Checking for apptainer binary...
[2026-01-07 22:44:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 22:44:35] Running /usr/bin/apptainer --version
[2026-01-07 22:44:35] apptainer version 1.4.5-2.el9
[2026-01-07 22:44:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 22:44:56] c-5-1.aglt2.org
[2026-01-07 22:44:56] apptainer works
[2026-01-07 22:44:56] Set ATHENA_PROC_NUMBER=8
[2026-01-07 22:44:56] Set ATHENA_CORE_NUMBER=8
[2026-01-07 22:44:56] Starting ATLAS job with PandaID=6962323422
[2026-01-07 22:44:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:13:31 (3778207): wrapper (7.7.26015): starting
09:13:31 (3778207): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:13:31] Arguments: --nthreads 8
[2026-01-08 09:13:31] Threads: 8
[2026-01-08 09:13:31] This job has been restarted, cleaning up previous attempt
[2026-01-08 09:13:31] Checking for CVMFS
[2026-01-08 09:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:13:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:13:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:13:33] 2.13.3.0 9955 92030 334228 154909 3 220 21763672 32935937 23006 16776704 0 424676437 99.712 316673651 33210 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 09:13:33] CVMFS is ok
[2026-01-08 09:13:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:13:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:13:33] Further information can be found at the LHC@home message board.
[2026-01-08 09:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:13:33] Checking for apptainer binary...
[2026-01-08 09:13:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:13:33] Running /usr/bin/apptainer --version
[2026-01-08 09:13:33] apptainer version 1.4.5-2.el9
[2026-01-08 09:13:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:13:34] c-5-1.aglt2.org
[2026-01-08 09:13:34] apptainer works
[2026-01-08 09:13:34] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:13:34] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:13:34] Starting ATLAS job with PandaID=6962323422
[2026-01-08 09:13:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 22:49:48]  *** The last 200 lines of the pilot log: ***
[2026-01-08 22:49:49] 2026-01-09 03:49:03,126 | INFO     | time since job start (48892s) is within the limit (174528.0s)
[2026-01-08 22:49:49] 2026-01-09 03:49:03,500 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 22:49:49] 2026-01-09 03:49:03,544 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0407999999998
[2026-01-08 22:49:49] 2026-01-09 03:49:03,643 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962323422/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 22:49:49] 2026-01-09 03:49:03,701 | INFO     | extracted standard info from prmon json
[2026-01-08 22:49:49] 2026-01-09 03:49:03,701 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 22:49:49] 2026-01-09 03:49:03,701 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 22:49:49] 2026-01-09 03:49:03,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 22:49:49] 2026-01-09 03:49:03,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 22:49:49] 2026-01-09 03:49:03,889 | INFO     | fitting pss+swap vs Time
[2026-01-08 22:49:49] 2026-01-09 03:49:03,911 | INFO     | sum of square deviations: 158162888251.46707
[2026-01-08 22:49:49] 2026-01-09 03:49:04,060 | INFO     | sum of deviations: 143664554454.2965
[2026-01-08 22:49:49] 2026-01-09 03:49:04,060 | INFO     | mean x: 1767906094.0438046
[2026-01-08 22:49:49] 2026-01-09 03:49:04,061 | INFO     | mean y: 2508504.362953692
[2026-01-08 22:49:49] 2026-01-09 03:49:04,061 | INFO     | intersect: -1603338759.3391426
[2026-01-08 22:49:49] 2026-01-09 03:49:04,062 | INFO     | chi2: 4.232497740659077
[2026-01-08 22:49:49] 2026-01-09 03:49:04,120 | INFO     | sum of square deviations: 155212275882.58453
[2026-01-08 22:49:49] 2026-01-09 03:49:04,270 | INFO     | sum of deviations: 298345519190.0276
[2026-01-08 22:49:49] 2026-01-09 03:49:04,270 | INFO     | mean x: 1767905941.5491183
[2026-01-08 22:49:49] 2026-01-09 03:49:04,270 | INFO     | mean y: 2516478.896725441
[2026-01-08 22:49:49] 2026-01-09 03:49:04,270 | INFO     | intersect: -3395712256.6293926
[2026-01-08 22:49:49] 2026-01-09 03:49:04,271 | INFO     | chi2: 2.051362277115805
[2026-01-08 22:49:49] 2026-01-09 03:49:04,272 | INFO     | current chi2=2.051362277115805 (change=51.53305677142852 %)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,273 | INFO     | sum of square deviations: 152298497572.8691
[2026-01-08 22:49:49] 2026-01-09 03:49:04,493 | INFO     | sum of deviations: 295717816875.82666
[2026-01-08 22:49:49] 2026-01-09 03:49:04,493 | INFO     | mean x: 1767905789.0519645
[2026-01-08 22:49:49] 2026-01-09 03:49:04,493 | INFO     | mean y: 2516341.3700887198
[2026-01-08 22:49:49] 2026-01-09 03:49:04,493 | INFO     | intersect: -3430224287.8041544
[2026-01-08 22:49:49] 2026-01-09 03:49:04,494 | INFO     | chi2: 2.051365456872551
[2026-01-08 22:49:49] 2026-01-09 03:49:04,495 | INFO     | current chi2=2.051365456872551 (change=-0.0001550070790215898 %)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,495 | INFO     | right removable region: 788
[2026-01-08 22:49:49] 2026-01-09 03:49:04,507 | INFO     | sum of square deviations: 155211815758.48547
[2026-01-08 22:49:49] 2026-01-09 03:49:04,657 | INFO     | sum of deviations: -22051904176.886604
[2026-01-08 22:49:49] 2026-01-09 03:49:04,658 | INFO     | mean x: 1767906246.5503778
[2026-01-08 22:49:49] 2026-01-09 03:49:04,658 | INFO     | mean y: 2517051.6221662466
[2026-01-08 22:49:49] 2026-01-09 03:49:04,658 | INFO     | intersect: 253694443.96265134
[2026-01-08 22:49:49] 2026-01-09 03:49:04,659 | INFO     | chi2: 2.304810675679024
[2026-01-08 22:49:49] 2026-01-09 03:49:04,659 | INFO     | current chi2=2.304810675679024 (change=45.54490476065504 %)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,660 | INFO     | sum of square deviations: 152297674190.4334
[2026-01-08 22:49:49] 2026-01-09 03:49:04,771 | INFO     | sum of deviations: -61185919197.8707
[2026-01-08 22:49:49] 2026-01-09 03:49:04,771 | INFO     | mean x: 1767906399.0570343
[2026-01-08 22:49:49] 2026-01-09 03:49:04,771 | INFO     | mean y: 2519098.8415716095
[2026-01-08 22:49:49] 2026-01-09 03:49:04,772 | INFO     | intersect: 712779309.0326016
[2026-01-08 22:49:49] 2026-01-09 03:49:04,773 | INFO     | chi2: 2.223847598840383
[2026-01-08 22:49:49] 2026-01-09 03:49:04,773 | INFO     | current chi2=2.223847598840383 (change=3.5127864380786176 %)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,773 | INFO     | left removable region: 20
[2026-01-08 22:49:49] 2026-01-09 03:49:04,791 | INFO     | sum of square deviations: 140457719230.47894
[2026-01-08 22:49:49] 2026-01-09 03:49:04,861 | INFO     | sum of deviations: 81210278601.23431
[2026-01-08 22:49:49] 2026-01-09 03:49:04,861 | INFO     | mean x: 1767906368.5677083
[2026-01-08 22:49:49] 2026-01-09 03:49:04,862 | INFO     | mean y: 2527705.08203125
[2026-01-08 22:49:49] 2026-01-09 03:49:04,862 | INFO     | intersect: -1019645867.9965017
[2026-01-08 22:49:49] 2026-01-09 03:49:04,880 | INFO     | chi2: 0.010664253432520032
[2026-01-08 22:49:49] 2026-01-09 03:49:04,886 | INFO     | current memory leak: 0.58 B/s (using 768 data points, chi2=0.01)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,887 | INFO     | could have reported an average CPU frequency of 2600 MHz (30 samples)
[2026-01-08 22:49:49] 2026-01-09 03:49:04,888 | INFO     | ..............................
[2026-01-08 22:49:49] 2026-01-09 03:49:04,888 | INFO     | . Timing measurements:
[2026-01-08 22:49:49] 2026-01-09 03:49:04,888 | INFO     | . get job = 0 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,888 | INFO     | . initial setup = 4 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,888 | INFO     | . payload setup = 28 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,889 | INFO     | . stage-in = 0 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,889 | INFO     | . payload execution = 48755 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,889 | INFO     | . stage-out = 10 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,889 | INFO     | . log creation = 2 s
[2026-01-08 22:49:49] 2026-01-09 03:49:04,889 | INFO     | ..............................
[2026-01-08 22:49:49] 2026-01-09 03:49:05,237 | INFO     | time since job start (48894s) is within the limit (174528.0s)
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | 
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | job summary report
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | --------------------------------------------------
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | PanDA job id: 6962323422
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | task id: 47898826
[2026-01-08 22:49:49] 2026-01-09 03:49:06,046 | INFO     | errors: (none)
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | pilot state: finished 
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | transexitcode: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | exeerrorcode: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | exeerrordiag: 
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | exitcode: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | exitmsg: OK
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | cpuconsumptiontime: 69191 s
[2026-01-08 22:49:49] 2026-01-09 03:49:06,047 | INFO     | nevents: 400
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | neventsw: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | pid: 3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | pgrp: 3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | corecount: 8
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | event service: False
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | sizes: {0: 2283792, 1: 2283991, 2: 2283991, 12: 2284019, 18: 2284309, 24: 2284337, 48789: 2330470, 48790: 2330469, 48801: 2339523, 48802: 2339579, 48849: 2339773}
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | --------------------------------------------------
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | 
[2026-01-08 22:49:49] 2026-01-09 03:49:06,048 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 22:49:49] 2026-01-09 03:49:06,299 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,299 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,299 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 22:49:49] 2026-01-09 03:49:06,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,302 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 22:49:49] 2026-01-09 03:49:06,302 | INFO     | job 6962323422 has completed (purged errors)
[2026-01-08 22:49:49] 2026-01-09 03:49:06,302 | INFO     | overall cleanup function is called
[2026-01-08 22:49:49] 2026-01-09 03:49:07,336 | INFO     | --- collectZombieJob: --- 10, [3819781]
[2026-01-08 22:49:49] 2026-01-09 03:49:07,336 | INFO     | zombie collector waiting for pid 3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:07,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 22:49:49] 2026-01-09 03:49:07,336 | INFO     | collected zombie processes
[2026-01-08 22:49:49] 2026-01-09 03:49:07,336 | INFO     | will attempt to kill all subprocesses of pid=3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:11,421 | INFO     | process IDs to be killed: [3819781] (in reverse order)
[2026-01-08 22:49:49] 2026-01-09 03:49:12,684 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 22:49:49] 2026-01-09 03:49:12,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 22:49:49] 2026-01-09 03:49:12,812 | INFO     | did not find any defunct processes belonging to 3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:12,888 | INFO     | did not find any defunct processes belonging to 3819781
[2026-01-08 22:49:49] 2026-01-09 03:49:12,888 | INFO     | ready for new job
[2026-01-08 22:49:49] 2026-01-09 03:49:12,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 22:49:49] 2026-01-09 03:49:12,892 | INFO     | ***************************************
[2026-01-08 22:49:49] 2026-01-09 03:49:12,892 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 22:49:49] 2026-01-09 03:49:12,892 | INFO     | ***************************************
[2026-01-08 22:49:49] 2026-01-09 03:49:12,892 | INFO     | 
[2026-01-08 22:49:49] 2026-01-09 03:49:12,894 | INFO     | architecture information:
[2026-01-08 22:49:49] 2026-01-09 03:49:12,895 | INFO     | executing command: cat /etc/os-release
[2026-01-08 22:49:49] 2026-01-09 03:49:12,914 | INFO     | cat /etc/os-release:
[2026-01-08 22:49:49] NAME="CentOS Linux"
[2026-01-08 22:49:49] VERSION="7 (Core)"
[2026-01-08 22:49:49] ID="centos"
[2026-01-08 22:49:49] ID_LIKE="rhel fedora"
[2026-01-08 22:49:49] VERSION_ID="7"
[2026-01-08 22:49:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 22:49:49] ANSI_COLOR="0;31"
[2026-01-08 22:49:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 22:49:49] HOME_URL="https://www.centos.org/"
[2026-01-08 22:49:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 22:49:49] 
[2026-01-08 22:49:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 22:49:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 22:49:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 22:49:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 22:49:49] 
[2026-01-08 22:49:49] 2026-01-09 03:49:12,914 | INFO     | ***************************************
[2026-01-08 22:49:49] 2026-01-09 03:49:13,418 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 22:49:49] 2026-01-09 03:49:13,671 | INFO     | sufficient remaining disk space (75581358080 B)
[2026-01-08 22:49:49] 2026-01-09 03:49:13,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 22:49:49] 2026-01-09 03:49:13,672 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 22:49:49] 2026-01-09 03:49:13,672 | INFO     | update_server=False
[2026-01-08 22:49:49] 2026-01-09 03:49:13,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 22:49:49] 2026-01-09 03:49:13,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:49:49] 2026-01-09 03:49:13,789 | INFO     | aborting loop
[2026-01-08 22:49:49] 2026-01-09 03:49:13,836 | INFO     | all payload control threads have been joined
[2026-01-08 22:49:49] 2026-01-09 03:49:13,885 | INFO     | all data control threads have been joined
[2026-01-08 22:49:49] 2026-01-09 03:49:14,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 22:49:49] 2026-01-09 03:49:14,678 | INFO     | [job] retrieve thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:14,795 | INFO     | [job] job monitor thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:14,843 | INFO     | [payload] control thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:14,847 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:14,891 | INFO     | [data] control thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:14,919 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:15,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:49:49] 2026-01-09 03:49:15,195 | INFO     | [payload] failed_post thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:15,230 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 22:49:49] 2026-01-09 03:49:15,365 | INFO     | all job control threads have been joined
[2026-01-08 22:49:49] 2026-01-09 03:49:15,660 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:15,680 | INFO     | [payload] validate_post thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:15,800 | INFO     | [job] validate thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:16,001 | INFO     | [data] copytool_in thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:16,115 | INFO     | [job] queue monitor thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:16,141 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:16,379 | INFO     | [job] control thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:16,434 | INFO     | [data] copytool_out thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:19,251 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 22:49:49] 2026-01-09 03:49:40,383 | INFO     | PID=3789508 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 22:49:49] 2026-01-09 03:49:40,383 | INFO     | .. there are 34 such processes running
[2026-01-08 22:49:49] 2026-01-09 03:49:40,384 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 22:49:49] 2026-01-09 03:49:40,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 22:49:49] 2026-01-09 03:49:40,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 22:49:49] 2026-01-09 03:49:40,650 | INFO     | [monitor] cgroup control has ended
[2026-01-08 22:49:49] 2026-01-09 03:49:41,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140270351767360)>', '<ExcThread(monitor, started 140269823432448)>']
[2026-01-08 22:49:49] 2026-01-09 03:49:42,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 22:49:49] 2026-01-09 03:49:42,397 | INFO     | [monitor] control thread has ended
[2026-01-08 22:49:49] 2026-01-09 03:49:46,573 | INFO     | all workflow threads have been joined
[2026-01-08 22:49:49] 2026-01-09 03:49:46,573 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 22:49:49] 2026-01-09 03:49:46,573 | INFO     | traces error code: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:46,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 22:49:49] 2026-01-09 03:49:47,631 [wrapper] ==== pilot stdout END ====
[2026-01-08 22:49:49] 2026-01-09 03:49:47,634 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 22:49:49] 2026-01-09 03:49:47,637 [wrapper] pilotpid: 3789508
[2026-01-08 22:49:49] 2026-01-09 03:49:47,640 [wrapper] Pilot exit status: 0
[2026-01-08 22:49:49] 2026-01-09 03:49:47,777 [wrapper] pandaids: 6962323422 6962323422
[2026-01-08 22:49:49] 2026-01-09 03:49:48,037 [wrapper] cleanup supervisor_pilot 3627201 3789509
[2026-01-08 22:49:49] 2026-01-09 03:49:48,055 [wrapper] Test setup, not cleaning
[2026-01-08 22:49:49] 2026-01-09 03:49:48,080 [wrapper] apfmon messages muted
[2026-01-08 22:49:49] 2026-01-09 03:49:48,116 [wrapper] ==== wrapper stdout END ====
[2026-01-08 22:49:49] 2026-01-09 03:49:48,170 [wrapper] ==== wrapper stderr END ====
[2026-01-08 22:49:49]  *** Error codes and diagnostics ***
[2026-01-08 22:49:49]     "exeErrorCode": 0,
[2026-01-08 22:49:49]     "exeErrorDiag": "",
[2026-01-08 22:49:49]     "pilotErrorCode": 0,
[2026-01-08 22:49:49]     "pilotErrorDiag": "",
[2026-01-08 22:49:49]  *** Listing of results directory ***
[2026-01-08 22:49:49] total 673324
[2026-01-08 22:49:49] drwx------. 7 boincer umatlas      4096 Dec  3 10:35 pilot3
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas    597923 Jan  7 08:01 pilot3.tar.gz
[2026-01-08 22:49:49] -rwx------. 1 boincer umatlas     36322 Jan  7 16:07 runpilot2-wrapper.sh
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:16 queuedata.json
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas       100 Jan  7 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 22:49:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 22:44 run_atlas
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas       105 Jan  7 22:44 job.xml
[2026-01-08 22:49:49] -rw-r--r--. 3 boincer umatlas 226481239 Jan  7 22:44 EVNT.47898824._000747.pool.root.1
[2026-01-08 22:49:49] -rw-r--r--. 3 boincer umatlas 226481239 Jan  7 22:44 ATLAS.root_0
[2026-01-08 22:49:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 22:44 start_atlas.sh
[2026-01-08 22:49:49] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 22:44 shared
[2026-01-08 22:49:49] -rw-r--r--. 2 boincer umatlas    610546 Jan  7 22:44 input.tar.gz
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas         0 Jan  7 22:44 boinc_lockfile
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas      2516 Jan  8 09:13 pandaJob.out
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas        57 Jan  8 09:13 setup.sh.local
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas    989835 Jan  8 09:14 agis_schedconf.cvmfs.json
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas 219205424 Jan  8 22:44 HITS.47898826._016066.pool.root.1
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas       532 Jan  8 22:45 boinc_task_state.xml
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas      6660 Jan  8 22:47 init_data.xml
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas      1058 Jan  8 22:48 memory_monitor_summary.json
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas   1516240 Jan  8 22:48 agis_ddmendpoints.agis.ALL.json
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas    864592 Jan  8 22:48 log.47898826._016066.job.log.tgz.1
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas      7843 Jan  8 22:49 heartbeat.json
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 22:49 boinc_mmap_file
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas        29 Jan  8 22:49 wrapper_checkpoint.txt
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas        96 Jan  8 22:49 pilot_heartbeat.json
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas      4824 Jan  8 22:49 pilotlog.txt
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas   5810531 Jan  8 22:49 log.47898826._016066.job.log.1
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas       357 Jan  8 22:49 output.list
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas       620 Jan  8 22:49 runtime_log
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas   6696960 Jan  8 22:49 result.tar.gz
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas      9413 Jan  8 22:49 runtime_log.err
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas       786 Jan  8 22:49 4TuLDmVvpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnzdKDmjLJj7n.diag
[2026-01-08 22:49:49] -rw-r--r--. 1 boincer umatlas     23389 Jan  8 22:49 stderr.txt
[2026-01-08 22:49:49] HITS file was successfully produced:
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas 219205424 Jan  8 22:44 shared/HITS.pool.root.1
[2026-01-08 22:49:49]  *** Contents of shared directory: ***
[2026-01-08 22:49:49] total 442408
[2026-01-08 22:49:49] -rw-r--r--. 3 boincer umatlas 226481239 Jan  7 22:44 ATLAS.root_0
[2026-01-08 22:49:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 22:44 start_atlas.sh
[2026-01-08 22:49:49] -rw-r--r--. 2 boincer umatlas    610546 Jan  7 22:44 input.tar.gz
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas 219205424 Jan  8 22:44 HITS.pool.root.1
[2026-01-08 22:49:49] -rw-------. 1 boincer umatlas   6696960 Jan  8 22:49 result.tar.gz
22:49:51 (3778207): run_atlas exited; CPU time 71229.811351
22:49:51 (3778207): called boinc_finish(0)

</stderr_txt>
]]>

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