Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:47:16 (29891): wrapper (7.7.26015): starting
09:47:16 (29891): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:47:16] Arguments: --nthreads 8
[2026-01-08 09:47:16] Threads: 8
[2026-01-08 09:47:16] Checking for CVMFS
[2026-01-08 09:47:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:47:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:47:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:47:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:47:19] 2.11.2.0 28634 33753 97924 154897 3 61 15893937 25165824 96 130560 0 6765892 99.620 10268081 2658 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 09:47:19] CVMFS is ok
[2026-01-08 09:47:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:47:19] Checking for apptainer binary...
[2026-01-08 09:47:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:47:19] Running /usr/bin/apptainer --version
[2026-01-08 09:47:19] apptainer version 1.3.2-1.el7
[2026-01-08 09:47:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:47:34] cg-vwn465.simple-grid.lan
[2026-01-08 09:47:34] apptainer works
[2026-01-08 09:47:34] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:47:34] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:47:34] Starting ATLAS job with PandaID=6962322593
[2026-01-08 09:47:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 15:41:36]  *** The last 200 lines of the pilot log: ***
[2026-01-08 15:41:36] 2026-01-08 14:40:46,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,435 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 15:41:36] 2026-01-08 14:40:47,436 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,438 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6962322593/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,439 | INFO     | extracted standard info from prmon json
[2026-01-08 15:41:36] 2026-01-08 14:40:47,439 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 15:41:36] 2026-01-08 14:40:47,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 15:41:36] 2026-01-08 14:40:47,439 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 15:41:36] 2026-01-08 14:40:47,439 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 15:41:36] 2026-01-08 14:40:47,446 | INFO     | fitting pss+swap vs Time
[2026-01-08 15:41:36] 2026-01-08 14:40:47,447 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,450 | INFO     | sum of deviations: 189431444903.00006
[2026-01-08 15:41:36] 2026-01-08 14:40:47,450 | INFO     | mean x: 1767872980.5
[2026-01-08 15:41:36] 2026-01-08 14:40:47,450 | INFO     | mean y: 2443129.174698795
[2026-01-08 15:41:36] 2026-01-08 14:40:47,451 | INFO     | intersect: -29510627366.976116
[2026-01-08 15:41:36] 2026-01-08 14:40:47,451 | INFO     | chi2: 7.7985775001482605
[2026-01-08 15:41:36] 2026-01-08 14:40:47,452 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,455 | INFO     | sum of deviations: 208301478862.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,455 | INFO     | mean x: 1767872828.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,456 | INFO     | mean y: 2448746.0642201835
[2026-01-08 15:41:36] 2026-01-08 14:40:47,456 | INFO     | intersect: -33962092552.093678
[2026-01-08 15:41:36] 2026-01-08 14:40:47,456 | INFO     | chi2: 7.069852202858771
[2026-01-08 15:41:36] 2026-01-08 14:40:47,456 | INFO     | current chi2=7.069852202858771 (change=9.344336159711638 %)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,456 | INFO     | right removable region: 326
[2026-01-08 15:41:36] 2026-01-08 14:40:47,457 | INFO     | sum of square deviations: 10842205148.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,460 | INFO     | sum of deviations: 72699118325.00002
[2026-01-08 15:41:36] 2026-01-08 14:40:47,460 | INFO     | mean x: 1767873133.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,461 | INFO     | mean y: 2478364.5565749235
[2026-01-08 15:41:36] 2026-01-08 14:40:47,461 | INFO     | intersect: -11851458756.644583
[2026-01-08 15:41:36] 2026-01-08 14:40:47,461 | INFO     | chi2: 2.9330197105215157
[2026-01-08 15:41:36] 2026-01-08 14:40:47,461 | INFO     | current chi2=2.9330197105215157 (change=62.39032425508684 %)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,462 | INFO     | sum of square deviations: 10352419220.5
[2026-01-08 15:41:36] 2026-01-08 14:40:47,465 | INFO     | sum of deviations: -1962566877.4999962
[2026-01-08 15:41:36] 2026-01-08 14:40:47,465 | INFO     | mean x: 1767873285.5
[2026-01-08 15:41:36] 2026-01-08 14:40:47,466 | INFO     | mean y: 2501547.798136646
[2026-01-08 15:41:36] 2026-01-08 14:40:47,466 | INFO     | intersect: 337647321.92491335
[2026-01-08 15:41:36] 2026-01-08 14:40:47,466 | INFO     | chi2: 0.8551435184044002
[2026-01-08 15:41:36] 2026-01-08 14:40:47,466 | INFO     | current chi2=0.8551435184044002 (change=70.84426281430109 %)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,467 | INFO     | sum of square deviations: 9877610318.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,470 | INFO     | sum of deviations: -13675996076.999996
[2026-01-08 15:41:36] 2026-01-08 14:40:47,470 | INFO     | mean x: 1767873438.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,470 | INFO     | mean y: 2505306.810725552
[2026-01-08 15:41:36] 2026-01-08 14:40:47,470 | INFO     | intersect: 2450205653.7926154
[2026-01-08 15:41:36] 2026-01-08 14:40:47,471 | INFO     | chi2: 0.7963006144188908
[2026-01-08 15:41:36] 2026-01-08 14:40:47,471 | INFO     | current chi2=0.7963006144188908 (change=6.881055953660681 %)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,471 | INFO     | left removable region: 30
[2026-01-08 15:41:36] 2026-01-08 14:40:47,472 | INFO     | sum of square deviations: 8041713570.0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,474 | INFO     | sum of deviations: 2867193583.500001
[2026-01-08 15:41:36] 2026-01-08 14:40:47,475 | INFO     | mean x: 1767873712.5
[2026-01-08 15:41:36] 2026-01-08 14:40:47,475 | INFO     | mean y: 2513713.253378378
[2026-01-08 15:41:36] 2026-01-08 14:40:47,475 | INFO     | intersect: -627804206.0303751
[2026-01-08 15:41:36] 2026-01-08 14:40:47,475 | INFO     | chi2: 0.005353076301700564
[2026-01-08 15:41:36] 2026-01-08 14:40:47,476 | INFO     | current memory leak: 0.36 B/s (using 296 data points, chi2=0.01)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,476 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,476 | INFO     | ..............................
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . Timing measurements:
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . get job = 0 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . initial setup = 16 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . payload setup = 166 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . stage-in = 0 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . payload execution = 20427 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . stage-out = 4 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | . log creation = 1 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,477 | INFO     | ..............................
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | 
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | job summary report
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | --------------------------------------------------
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | PanDA job id: 6962322593
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | task id: 47898826
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | errors: (none)
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | pilot state: finished 
[2026-01-08 15:41:36] 2026-01-08 14:40:47,697 | INFO     | transexitcode: 0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | exeerrorcode: 0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | exeerrordiag: 
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | exitcode: 0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | exitmsg: OK
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | cpuconsumptiontime: 76383 s
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | nevents: 400
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | neventsw: 0
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | pid: 7700
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | pgrp: 7700
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | corecount: 8
[2026-01-08 15:41:36] 2026-01-08 14:40:47,698 | INFO     | event service: False
[2026-01-08 15:41:36] 2026-01-08 14:40:47,699 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 13: 2284025, 23: 2284081, 34: 2284109, 45: 2284265, 55: 2284293, 66: 2284321, 77: 2284349, 88: 2284405, 98: 2284713, 10
[2026-01-08 15:41:36] 2026-01-08 14:40:47,699 | INFO     | --------------------------------------------------
[2026-01-08 15:41:36] 2026-01-08 14:40:47,699 | INFO     | 
[2026-01-08 15:41:36] 2026-01-08 14:40:47,699 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-08 15:41:36] 2026-01-08 14:40:48,198 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 15:41:36] 2026-01-08 14:40:48,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,201 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 15:41:36] 2026-01-08 14:40:48,201 | INFO     | job 6962322593 has completed (purged errors)
[2026-01-08 15:41:36] 2026-01-08 14:40:48,201 | INFO     | overall cleanup function is called
[2026-01-08 15:41:36] 2026-01-08 14:40:49,212 | INFO     | --- collectZombieJob: --- 10, [7700]
[2026-01-08 15:41:36] 2026-01-08 14:40:49,212 | INFO     | zombie collector waiting for pid 7700
[2026-01-08 15:41:36] 2026-01-08 14:40:49,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 15:41:36] 2026-01-08 14:40:49,212 | INFO     | collected zombie processes
[2026-01-08 15:41:36] 2026-01-08 14:40:49,212 | INFO     | will attempt to kill all subprocesses of pid=7700
[2026-01-08 15:41:36] 2026-01-08 14:40:49,283 | INFO     | process IDs to be killed: [7700] (in reverse order)
[2026-01-08 15:41:36] 2026-01-08 14:40:50,185 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 15:41:36] 2026-01-08 14:40:50,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 15:41:36] 2026-01-08 14:40:50,187 | INFO     | did not find any defunct processes belonging to 7700
[2026-01-08 15:41:36] 2026-01-08 14:40:50,189 | INFO     | did not find any defunct processes belonging to 7700
[2026-01-08 15:41:36] 2026-01-08 14:40:50,189 | INFO     | ready for new job
[2026-01-08 15:41:36] 2026-01-08 14:40:50,189 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 15:41:36] 2026-01-08 14:40:50,192 | INFO     | ***************************************
[2026-01-08 15:41:36] 2026-01-08 14:40:50,192 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 15:41:36] 2026-01-08 14:40:50,192 | INFO     | ***************************************
[2026-01-08 15:41:36] 2026-01-08 14:40:50,192 | INFO     | 
[2026-01-08 15:41:36] 2026-01-08 14:40:50,193 | INFO     | pilot is running in a VM
[2026-01-08 15:41:36] 2026-01-08 14:40:50,193 | INFO     | architecture information:
[2026-01-08 15:41:36] 2026-01-08 14:40:50,199 | INFO     | executing command: cat /etc/os-release
[2026-01-08 15:41:36] 2026-01-08 14:40:50,379 | INFO     | cat /etc/os-release:
[2026-01-08 15:41:36] NAME="CentOS Linux"
[2026-01-08 15:41:36] VERSION="7 (Core)"
[2026-01-08 15:41:36] ID="centos"
[2026-01-08 15:41:36] ID_LIKE="rhel fedora"
[2026-01-08 15:41:36] VERSION_ID="7"
[2026-01-08 15:41:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 15:41:36] ANSI_COLOR="0;31"
[2026-01-08 15:41:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 15:41:36] HOME_URL="https://www.centos.org/"
[2026-01-08 15:41:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 15:41:36] 
[2026-01-08 15:41:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 15:41:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 15:41:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 15:41:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 15:41:36] 
[2026-01-08 15:41:36] 2026-01-08 14:40:50,379 | INFO     | ***************************************
[2026-01-08 15:41:36] 2026-01-08 14:40:50,883 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-08 15:41:36] 2026-01-08 14:40:51,125 | INFO     | sufficient remaining disk space (496201891840 B)
[2026-01-08 15:41:36] 2026-01-08 14:40:51,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 15:41:36] 2026-01-08 14:40:51,126 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 15:41:36] 2026-01-08 14:40:51,126 | INFO     | update_server=False
[2026-01-08 15:41:36] 2026-01-08 14:40:51,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 15:41:36] 2026-01-08 14:40:51,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 15:41:36] 2026-01-08 14:40:51,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:41:36] 2026-01-08 14:40:51,134 | INFO     | aborting loop
[2026-01-08 15:41:36] 2026-01-08 14:40:51,178 | INFO     | all data control threads have been joined
[2026-01-08 15:41:36] 2026-01-08 14:40:51,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 15:41:36] 2026-01-08 14:40:52,132 | INFO     | [job] retrieve thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,134 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,140 | INFO     | [job] job monitor thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,184 | INFO     | [data] control thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,217 | INFO     | all payload control threads have been joined
[2026-01-08 15:41:36] 2026-01-08 14:40:52,226 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,434 | INFO     | all job control threads have been joined
[2026-01-08 15:41:36] 2026-01-08 14:40:52,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:41:36] 2026-01-08 14:40:52,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,741 | INFO     | [payload] validate_post thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:52,997 | INFO     | [job] validate thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,212 | INFO     | [payload] failed_post thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,219 | INFO     | [data] copytool_in thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,223 | INFO     | [payload] control thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,250 | INFO     | [data] copytool_out thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,261 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,440 | INFO     | [job] control thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:53,608 | INFO     | [job] queue monitor thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:40:55,136 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 15:41:36] 2026-01-08 14:41:19,786 | INFO     | PID=1234 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 15:41:36] 2026-01-08 14:41:19,786 | INFO     | .. there are 2 such processes running
[2026-01-08 15:41:36] 2026-01-08 14:41:19,786 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 15:41:36] 2026-01-08 14:41:19,787 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 15:41:36] 2026-01-08 14:41:19,787 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 15:41:36] 2026-01-08 14:41:24,656 | INFO     | [monitor] cgroup control has ended
[2026-01-08 15:41:36] 2026-01-08 14:41:26,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492857030464)>', '<ExcThread(monitor, started 140492557752064)>']
[2026-01-08 15:41:36] 2026-01-08 14:41:26,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 15:41:36] 2026-01-08 14:41:26,829 | INFO     | [monitor] control thread has ended
[2026-01-08 15:41:36] 2026-01-08 14:41:31,392 | INFO     | all workflow threads have been joined
[2026-01-08 15:41:36] 2026-01-08 14:41:31,392 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 15:41:36] 2026-01-08 14:41:31,392 | INFO     | traces error code: 0
[2026-01-08 15:41:36] 2026-01-08 14:41:31,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 15:41:36] 2026-01-08 14:41:31,870 [wrapper] ==== pilot stdout END ====
[2026-01-08 15:41:36] 2026-01-08 14:41:31,968 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 15:41:36] 2026-01-08 14:41:32,059 [wrapper] pilotpid: 1234
[2026-01-08 15:41:36] 2026-01-08 14:41:32,208 [wrapper] Pilot exit status: 0
[2026-01-08 15:41:36] 2026-01-08 14:41:32,468 [wrapper] pandaids: 6962322593
[2026-01-08 15:41:36] 2026-01-08 14:41:33,329 [wrapper] cleanup supervisor_pilot  6901 1235
[2026-01-08 15:41:36] 2026-01-08 14:41:33,439 [wrapper] Test setup, not cleaning
[2026-01-08 15:41:36] 2026-01-08 14:41:33,571 [wrapper] apfmon messages muted
[2026-01-08 15:41:36] 2026-01-08 14:41:33,722 [wrapper] ==== wrapper stdout END ====
[2026-01-08 15:41:36] 2026-01-08 14:41:33,865 [wrapper] ==== wrapper stderr END ====
[2026-01-08 15:41:36]  *** Error codes and diagnostics ***
[2026-01-08 15:41:36]     "exeErrorCode": 0,
[2026-01-08 15:41:36]     "exeErrorDiag": "",
[2026-01-08 15:41:36]     "pilotErrorCode": 0,
[2026-01-08 15:41:36]     "pilotErrorDiag": "",
[2026-01-08 15:41:36]  *** Listing of results directory ***
[2026-01-08 15:41:36] total 447800
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 15:41:36] -rwx------. 1 boinc boinc     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:16 queuedata.json
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc       100 Jan  8 09:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 15:41:36] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 09:47 run_atlas
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc       105 Jan  8 09:47 job.xml
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc      6390 Jan  8 09:47 init_data.xml
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc 221740652 Jan  8 09:47 EVNT.47898824._000722.pool.root.1
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:47 start_atlas.sh
[2026-01-08 15:41:36] drwxrwx--x. 2 boinc boinc        68 Jan  8 09:47 shared
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc    592402 Jan  8 09:47 input.tar.gz
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc         0 Jan  8 09:47 boinc_lockfile
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc      2519 Jan  8 09:47 pandaJob.out
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc    989819 Jan  8 09:51 agis_schedconf.cvmfs.json
[2026-01-08 15:41:36] drwx------. 5 boinc boinc      4096 Jan  8 09:51 pilot3
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc 226248187 Jan  8 15:37 HITS.47898826._015462.pool.root.1
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc       531 Jan  8 15:37 boinc_task_state.xml
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc      1015 Jan  8 15:38 memory_monitor_summary.json
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc   1516240 Jan  8 15:38 agis_ddmendpoints.agis.ALL.json
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc    553273 Jan  8 15:38 log.47898826._015462.job.log.tgz.1
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc        95 Jan  8 15:40 pilot_heartbeat.json
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc      7783 Jan  8 15:40 heartbeat.json
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc        28 Jan  8 15:41 wrapper_checkpoint.txt
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc      8192 Jan  8 15:41 boinc_mmap_file
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc      4883 Jan  8 15:41 pilotlog.txt
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc   2777066 Jan  8 15:41 log.47898826._015462.job.log.1
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc       357 Jan  8 15:41 output.list
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc       620 Jan  8 15:41 runtime_log
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc   3348480 Jan  8 15:41 result.tar.gz
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc      8817 Jan  8 15:41 runtime_log.err
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc       657 Jan  8 15:41 bfHODm8upx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1xdKDmtt03Lo.diag
[2026-01-08 15:41:36] -rw-r--r--. 1 boinc boinc     20730 Jan  8 15:41 stderr.txt
[2026-01-08 15:41:36] HITS file was successfully produced:
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc 226248187 Jan  8 15:37 shared/HITS.pool.root.1
[2026-01-08 15:41:36]  *** Contents of shared directory: ***
[2026-01-08 15:41:36] total 441360
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc 221740652 Jan  8 09:47 ATLAS.root_0
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:47 start_atlas.sh
[2026-01-08 15:41:36] -rw-r--r--. 2 boinc boinc    592402 Jan  8 09:47 input.tar.gz
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc 226248187 Jan  8 15:37 HITS.pool.root.1
[2026-01-08 15:41:36] -rw-------. 1 boinc boinc   3348480 Jan  8 15:41 result.tar.gz
15:41:38 (29891): run_atlas exited; CPU time 76585.453938
15:41:38 (29891): called boinc_finish(0)

</stderr_txt>
]]>

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