Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:26:26 (6966): wrapper (7.7.26015): starting
05:26:26 (6966): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 05:26:26] Arguments: --nthreads 8
[2026-01-08 05:26:26] Threads: 8
[2026-01-08 05:26:26] Checking for CVMFS
[2026-01-08 05:26:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:26:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:26:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:26:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:26:26] 2.11.0.0 4215 126936 89044 154891 3 188 2396247 4096000 873 130560 6 3032130 98.921 9551044 566 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-08 05:26:26] CVMFS is ok
[2026-01-08 05:26:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 05:26:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 05:26:26] Further information can be found at the LHC@home message board.
[2026-01-08 05:26:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:26:26] Checking for apptainer binary...
[2026-01-08 05:26:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-08 05:26:26] apptainer is not installed, using version from CVMFS
[2026-01-08 05:26:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:26:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_11004047/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node276
[2026-01-08 05:26:26] apptainer works
[2026-01-08 05:26:26] Set ATHENA_PROC_NUMBER=8
[2026-01-08 05:26:26] Set ATHENA_CORE_NUMBER=8
[2026-01-08 05:26:26] Starting ATLAS job with PandaID=6962322454
[2026-01-08 05:26:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11004047/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 06:32:44]  *** The last 200 lines of the pilot log: ***
[2026-01-08 06:32:44]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-08 06:32:44]  is_altstaged=None
[2026-01-08 06:32:44]  is_tar=False
[2026-01-08 06:32:44]  lfn=log.47898826._015323.job.log.tgz.1
[2026-01-08 06:32:44]  mtime=0
[2026-01-08 06:32:44]  protocol_id=None
[2026-01-08 06:32:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 06:32:44]  replicas=None
[2026-01-08 06:32:44]  scope=mc23_13p6TeV
[2026-01-08 06:32:44]  status=None
[2026-01-08 06:32:44]  status_code=0
[2026-01-08 06:32:44]  storage_token=
[2026-01-08 06:32:44]  surl=/tmp/job_11004047/atlas/pilot/slots/0/PanDA_Pilot-6962322454/log.47898826._015323.job.log.tgz.1
[2026-01-08 06:32:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/cc/log.47898826._015323.job.log.tgz.1
[2026-01-08 06:32:44]  workdir=None
[2026-01-08 06:32:44] ]
[2026-01-08 06:32:44] 2026-01-08 05:31:36,729 | INFO     | transferring file log.47898826._015323.job.log.tgz.1 from /tmp/job_11004047/atlas/pilot/slots/0/PanDA_Pilot-6962322454/log.47898826._015323.job.log.tgz.1 to /tmp/j
[2026-01-08 06:32:44] 2026-01-08 05:31:36,729 | INFO     | executing command: /usr/bin/env mv /tmp/job_11004047/atlas/pilot/slots/0/PanDA_Pilot-6962322454/log.47898826._015323.job.log.tgz.1 /tmp/job_11004047/atlas/pilot/sl
[2026-01-08 06:32:44] 2026-01-08 05:31:36,737 | INFO     | adding to output.list: log.47898826._015323.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/cc/log.47898826._015323.job.log.tg
[2026-01-08 06:32:44] 2026-01-08 05:31:36,737 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 06:32:44] 2026-01-08 05:31:36,737 | INFO     | summary of transferred files:
[2026-01-08 06:32:44] 2026-01-08 05:31:36,737 | INFO     |  -- lfn=log.47898826._015323.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 06:32:44] 2026-01-08 05:31:36,737 | INFO     | stage-out finished correctly
[2026-01-08 06:32:44] 2026-01-08 05:31:37,041 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 06:32:44] 2026-01-08 05:31:37,732 | INFO     | time since job start (3905s) is within the limit (174528.0s)
[2026-01-08 06:32:44] 2026-01-08 05:31:38,644 | INFO     | monitor loop #289: job 0:6962322454 is in state 'finished'
[2026-01-08 06:32:44] 2026-01-08 05:31:38,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 06:32:44] 2026-01-08 05:31:39,094 | INFO     | job 6962322454 has state=finished
[2026-01-08 06:32:44] 2026-01-08 05:31:39,094 | INFO     | preparing for final server update for job 6962322454 in state='finished'
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | this job has now completed (state=finished)
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | log transfer has been attempted: DONE
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | job 6962322454 has finished - writing final server update
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | total number of processed events: 400 (read)
[2026-01-08 06:32:44] 2026-01-08 05:31:39,095 | INFO     | executing command: lscpu
[2026-01-08 06:32:44] 2026-01-08 05:31:39,125 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 06:32:44] 2026-01-08 05:31:39,738 | INFO     | time since job start (3907s) is within the limit (174528.0s)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,601 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 06:32:44] 2026-01-08 05:31:40,618 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2518.5550000000003
[2026-01-08 06:32:44] 2026-01-08 05:31:40,623 | INFO     | using path: /tmp/job_11004047/atlas/pilot/slots/0/PanDA_Pilot-6962322454/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,624 | INFO     | extracted standard info from prmon json
[2026-01-08 06:32:44] 2026-01-08 05:31:40,624 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 06:32:44] 2026-01-08 05:31:40,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 06:32:44] 2026-01-08 05:31:40,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 06:32:44] 2026-01-08 05:31:40,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | fitting pss+swap vs Time
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | sum of square deviations: 57407588.0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | sum of deviations: -2587824472.0000005
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | mean x: 1767848423.0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | mean y: 2618060.035087719
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | intersect: 79693850024.4578
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | chi2: 0.01389546166975944
[2026-01-08 06:32:44] 2026-01-08 05:31:40,625 | INFO     | current memory leak: -45.08 B/s (using 57 data points, chi2=0.01)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | could have reported an average CPU frequency of 2512 MHz (6 samples)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | ..............................
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . Timing measurements:
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . get job = 0 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . initial setup = 1 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . payload setup = 2 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . stage-in = 0 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . payload execution = 3885 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . stage-out = 0 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | . log creation = 0 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,626 | INFO     | ..............................
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | 
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | job summary report
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | --------------------------------------------------
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | PanDA job id: 6962322454
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | task id: 47898826
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | errors: (none)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | pilot state: finished 
[2026-01-08 06:32:44] 2026-01-08 05:31:40,674 | INFO     | transexitcode: 0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | exeerrorcode: 0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | exeerrordiag: 
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | exitcode: 0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | exitmsg: OK
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | cpuconsumptiontime: 28029 s
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | nevents: 400
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | neventsw: 0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | pid: 17593
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | pgrp: 17593
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | corecount: 8
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | event service: False
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | sizes: {0: 2284095, 2: 2284357, 11: 2284385, 3892: 2319388, 3893: 2319388, 3896: 2319582}
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | --------------------------------------------------
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | 
[2026-01-08 06:32:44] 2026-01-08 05:31:40,675 | INFO     | executing command: ls -lF /tmp/job_11004047/atlas/pilot/slots/0
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | job 6962322454 has completed (purged errors)
[2026-01-08 06:32:44] 2026-01-08 05:31:40,684 | INFO     | overall cleanup function is called
[2026-01-08 06:32:44] 2026-01-08 05:31:41,690 | INFO     | --- collectZombieJob: --- 10, [17593]
[2026-01-08 06:32:44] 2026-01-08 05:31:41,690 | INFO     | zombie collector waiting for pid 17593
[2026-01-08 06:32:44] 2026-01-08 05:31:41,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 06:32:44] 2026-01-08 05:31:41,690 | INFO     | collected zombie processes
[2026-01-08 06:32:44] 2026-01-08 05:31:41,690 | INFO     | will attempt to kill all subprocesses of pid=17593
[2026-01-08 06:32:44] 2026-01-08 05:31:41,780 | INFO     | process IDs to be killed: [17593] (in reverse order)
[2026-01-08 06:32:44] 2026-01-08 05:31:41,810 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 06:32:44] 2026-01-08 05:31:41,811 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 06:32:44] 2026-01-08 05:31:41,814 | INFO     | did not find any defunct processes belonging to 17593
[2026-01-08 06:32:44] 2026-01-08 05:31:41,817 | INFO     | did not find any defunct processes belonging to 17593
[2026-01-08 06:32:44] 2026-01-08 05:31:41,817 | INFO     | ready for new job
[2026-01-08 06:32:44] 2026-01-08 05:31:41,817 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 06:32:44] 2026-01-08 05:31:41,817 | INFO     | ***************************************
[2026-01-08 06:32:44] 2026-01-08 05:31:41,818 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 06:32:44] 2026-01-08 05:31:41,818 | INFO     | ***************************************
[2026-01-08 06:32:44] 2026-01-08 05:31:41,818 | INFO     | 
[2026-01-08 06:32:44] 2026-01-08 05:31:41,832 | INFO     | architecture information:
[2026-01-08 06:32:44] 2026-01-08 05:31:41,832 | INFO     | executing command: cat /etc/os-release
[2026-01-08 06:32:44] 2026-01-08 05:31:41,837 | INFO     | cat /etc/os-release:
[2026-01-08 06:32:44] NAME="CentOS Linux"
[2026-01-08 06:32:44] VERSION="7 (Core)"
[2026-01-08 06:32:44] ID="centos"
[2026-01-08 06:32:44] ID_LIKE="rhel fedora"
[2026-01-08 06:32:44] VERSION_ID="7"
[2026-01-08 06:32:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 06:32:44] ANSI_COLOR="0;31"
[2026-01-08 06:32:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 06:32:44] HOME_URL="https://www.centos.org/"
[2026-01-08 06:32:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 06:32:44] 
[2026-01-08 06:32:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 06:32:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 06:32:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 06:32:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 06:32:44] 
[2026-01-08 06:32:44] 2026-01-08 05:31:41,837 | INFO     | ***************************************
[2026-01-08 06:32:44] 2026-01-08 05:31:42,340 | INFO     | executing command: df -mP /tmp/job_11004047/atlas/pilot/slots/0
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | INFO     | sufficient remaining disk space (227137290240 B)
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | INFO     | update_server=False
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | INFO     | aborting loop
[2026-01-08 06:32:44] 2026-01-08 05:31:42,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 06:32:44] 2026-01-08 05:31:42,541 | INFO     | all data control threads have been joined
[2026-01-08 06:32:44] 2026-01-08 05:31:42,755 | INFO     | all payload control threads have been joined
[2026-01-08 06:32:44] 2026-01-08 05:31:43,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 06:32:44] 2026-01-08 05:31:43,346 | INFO     | [job] queue monitor thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,346 | INFO     | [job] job monitor thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,346 | INFO     | [job] retrieve thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,546 | INFO     | [data] control thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,628 | INFO     | all job control threads have been joined
[2026-01-08 06:32:44] 2026-01-08 05:31:43,700 | INFO     | [payload] validate_post thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,760 | INFO     | [payload] control thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:43,831 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,172 | INFO     | [job] validate thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,244 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,351 | INFO     | [data] copytool_out thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,597 | INFO     | [data] copytool_in thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,633 | INFO     | [job] control thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,751 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:44,764 | INFO     | [payload] failed_post thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:47,100 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:31:52,961 | INFO     | job.realtimelogging is not enabled
[2026-01-08 06:32:44] 2026-01-08 05:31:53,966 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 06:32:44] 2026-01-08 05:32:12,920 | INFO     | PID=10914 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 06:32:44] 2026-01-08 05:32:12,920 | INFO     | .. there are 2 such processes running
[2026-01-08 06:32:44] 2026-01-08 05:32:12,920 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 06:32:44] 2026-01-08 05:32:12,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 06:32:44] 2026-01-08 05:32:12,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 06:32:44] 2026-01-08 05:32:38,102 | INFO     | [monitor] cgroup control has ended
[2026-01-08 06:32:44] 2026-01-08 05:32:39,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062990080)>']
[2026-01-08 06:32:44] 2026-01-08 05:32:40,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 06:32:44] 2026-01-08 05:32:40,056 | INFO     | [monitor] control thread has ended
[2026-01-08 06:32:44] 2026-01-08 05:32:44,304 | INFO     | all workflow threads have been joined
[2026-01-08 06:32:44] 2026-01-08 05:32:44,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 06:32:44] 2026-01-08 05:32:44,304 | INFO     | traces error code: 0
[2026-01-08 06:32:44] 2026-01-08 05:32:44,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 06:32:44] 2026-01-08 05:32:44,354 [wrapper] ==== pilot stdout END ====
[2026-01-08 06:32:44] 2026-01-08 05:32:44,355 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 06:32:44] 2026-01-08 05:32:44,356 [wrapper] pilotpid: 10914
[2026-01-08 06:32:44] 2026-01-08 05:32:44,357 [wrapper] Pilot exit status: 0
[2026-01-08 06:32:44] 2026-01-08 05:32:44,361 [wrapper] pandaids: 6962322454
[2026-01-08 06:32:44] 2026-01-08 05:32:44,383 [wrapper] cleanup supervisor_pilot 29855 10915
[2026-01-08 06:32:44] 2026-01-08 05:32:44,384 [wrapper] Test setup, not cleaning
[2026-01-08 06:32:44] 2026-01-08 05:32:44,385 [wrapper] apfmon messages muted
[2026-01-08 06:32:44] 2026-01-08 05:32:44,386 [wrapper] ==== wrapper stdout END ====
[2026-01-08 06:32:44] 2026-01-08 05:32:44,387 [wrapper] ==== wrapper stderr END ====
[2026-01-08 06:32:44]  *** Error codes and diagnostics ***
[2026-01-08 06:32:44]     "exeErrorCode": 0,
[2026-01-08 06:32:44]     "exeErrorDiag": "",
[2026-01-08 06:32:44]     "pilotErrorCode": 0,
[2026-01-08 06:32:44]     "pilotErrorDiag": "",
[2026-01-08 06:32:44]  *** Listing of results directory ***
[2026-01-08 06:32:44] total 439104
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 06:32:44] -rwx------ 1 mf493845 unix-user     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      5112 Jan  7 22:16 queuedata.json
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user       100 Jan  8 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 06:32:44] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  8 04:28 run_atlas
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user       105 Jan  8 04:28 job.xml
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user 225967530 Jan  8 05:26 EVNT.47898824._000717.pool.root.1
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 05:26 start_atlas.sh
[2026-01-08 06:32:44] drwxrwx--x 2 mf493845 unix-user       100 Jan  8 05:26 shared
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user    592403 Jan  8 05:26 input.tar.gz
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      6390 Jan  8 05:26 init_data.xml
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user         0 Jan  8 05:26 boinc_setup_complete
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      8192 Jan  8 05:26 boinc_mmap_file
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user         0 Jan  8 05:26 boinc_lockfile
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      2519 Jan  8 05:26 pandaJob.out
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    989835 Jan  8 05:26 agis_schedconf.cvmfs.json
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user   1516240 Jan  8 05:26 agis_ddmendpoints.agis.ALL.json
[2026-01-08 06:32:44] drwx------ 5 mf493845 unix-user       440 Jan  8 05:26 pilot3
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user 217966032 Jan  8 06:31 HITS.47898826._015323.pool.root.1
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user        95 Jan  8 06:31 pilot_heartbeat.json
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      1011 Jan  8 06:31 memory_monitor_summary.json
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    308247 Jan  8 06:31 log.47898826._015323.job.log.tgz.1
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      7764 Jan  8 06:31 heartbeat.json
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      4907 Jan  8 06:32 pilotlog.txt
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    599777 Jan  8 06:32 log.47898826._015323.job.log.1
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user       357 Jan  8 06:32 output.list
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user       620 Jan  8 06:32 runtime_log
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    931840 Jan  8 06:32 result.tar.gz
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user      9220 Jan  8 06:32 runtime_log.err
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user       641 Jan  8 06:32 5zLKDm9upx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz5iKDmXqOJ1n.diag
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user     21900 Jan  8 06:32 stderr.txt
[2026-01-08 06:32:44] HITS file was successfully produced:
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user 217966032 Jan  8 06:31 shared/HITS.pool.root.1
[2026-01-08 06:32:44]  *** Contents of shared directory: ***
[2026-01-08 06:32:44] total 435040
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user 225967530 Jan  8 05:26 ATLAS.root_0
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 05:26 start_atlas.sh
[2026-01-08 06:32:44] -rw-r--r-- 2 mf493845 unix-user    592403 Jan  8 05:26 input.tar.gz
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user 217966032 Jan  8 06:31 HITS.pool.root.1
[2026-01-08 06:32:44] -rw------- 1 mf493845 unix-user    931840 Jan  8 06:32 result.tar.gz
06:32:46 (6966): run_atlas exited; CPU time 28076.178824
06:32:46 (6966): called boinc_finish(0)

</stderr_txt>
]]>

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