Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:38 (3891): wrapper (7.7.26015): starting
12:06:38 (3891): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:06:38] Arguments: --nthreads 8
[2026-01-08 12:06:38] Threads: 8
[2026-01-08 12:06:38] Checking for CVMFS
[2026-01-08 12:06:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:06:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:06:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:06:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:06:41] 2.11.2.0 12981 33892 100916 154902 1 60 15141399 25165825 96 130560 0 14888979 99.805 10918732 3990 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 12:06:41] CVMFS is ok
[2026-01-08 12:06:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:06:41] Checking for apptainer binary...
[2026-01-08 12:06:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:06:41] Running /usr/bin/apptainer --version
[2026-01-08 12:06:42] apptainer version 1.3.2-1.el7
[2026-01-08 12:06:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:06:55] cg-vwn366.simple-grid.lan
[2026-01-08 12:06:55] apptainer works
[2026-01-08 12:06:55] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:06:55] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:06:55] Starting ATLAS job with PandaID=6962322662
[2026-01-08 12:06:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:18:03]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:18:04] 2026-01-08 17:17:05,189 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 18:18:04] 2026-01-08 17:17:05,191 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 18:18:04] 2026-01-08 17:17:05,192 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6962322662/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,193 | INFO     | extracted standard info from prmon json
[2026-01-08 18:18:04] 2026-01-08 17:17:05,193 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 18:18:04] 2026-01-08 17:17:05,193 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 18:18:04] 2026-01-08 17:17:05,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 18:18:04] 2026-01-08 17:17:05,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 18:18:04] 2026-01-08 17:17:05,201 | INFO     | fitting pss+swap vs Time
[2026-01-08 18:18:04] 2026-01-08 17:17:05,202 | INFO     | sum of square deviations: 12955770358.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,206 | INFO     | sum of deviations: 218039540090.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,207 | INFO     | mean x: 1767881795.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,207 | INFO     | mean y: 2433974.8299711817
[2026-01-08 18:18:04] 2026-01-08 17:17:05,207 | INFO     | intersect: -29750187665.09148
[2026-01-08 18:18:04] 2026-01-08 17:17:05,207 | INFO     | chi2: 8.47339091830212
[2026-01-08 18:18:04] 2026-01-08 17:17:05,208 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,217 | INFO     | sum of deviations: 237618446966.49997
[2026-01-08 18:18:04] 2026-01-08 17:17:05,218 | INFO     | mean x: 1767881642.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,218 | INFO     | mean y: 2439309.2134502926
[2026-01-08 18:18:04] 2026-01-08 17:17:05,218 | INFO     | intersect: -33864840055.33916
[2026-01-08 18:18:04] 2026-01-08 17:17:05,218 | INFO     | chi2: 7.7485330362441465
[2026-01-08 18:18:04] 2026-01-08 17:17:05,219 | INFO     | current chi2=7.7485330362441465 (change=8.554519542964975 %)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,219 | INFO     | right removable region: 341
[2026-01-08 18:18:04] 2026-01-08 17:17:05,219 | INFO     | sum of square deviations: 12403750705.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,224 | INFO     | sum of deviations: 95269105850.50002
[2026-01-08 18:18:04] 2026-01-08 17:17:05,224 | INFO     | mean x: 1767881947.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,224 | INFO     | mean y: 2467878.7046783627
[2026-01-08 18:18:04] 2026-01-08 17:17:05,224 | INFO     | intersect: -13576048522.216196
[2026-01-08 18:18:04] 2026-01-08 17:17:05,225 | INFO     | chi2: 3.477504868970644
[2026-01-08 18:18:04] 2026-01-08 17:17:05,225 | INFO     | current chi2=3.477504868970644 (change=58.9597021723688 %)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,225 | INFO     | sum of square deviations: 11867638328.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,229 | INFO     | sum of deviations: 4622549927.000004
[2026-01-08 18:18:04] 2026-01-08 17:17:05,229 | INFO     | mean x: 1767882100.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,230 | INFO     | mean y: 2493636.8635014836
[2026-01-08 18:18:04] 2026-01-08 17:17:05,230 | INFO     | intersect: -686112052.5278456
[2026-01-08 18:18:04] 2026-01-08 17:17:05,230 | INFO     | chi2: 0.9028831951880776
[2026-01-08 18:18:04] 2026-01-08 17:17:05,230 | INFO     | current chi2=0.9028831951880776 (change=74.03646495956352 %)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,231 | INFO     | sum of square deviations: 11347200663.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,239 | INFO     | sum of deviations: -8043524568.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,239 | INFO     | mean x: 1767882252.5
[2026-01-08 18:18:04] 2026-01-08 17:17:05,240 | INFO     | mean y: 2497327.4668674697
[2026-01-08 18:18:04] 2026-01-08 17:17:05,240 | INFO     | intersect: 1255670224.8640437
[2026-01-08 18:18:04] 2026-01-08 17:17:05,240 | INFO     | chi2: 0.832734578530148
[2026-01-08 18:18:04] 2026-01-08 17:17:05,240 | INFO     | current chi2=0.832734578530148 (change=7.769401073337852 %)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,241 | INFO     | left removable region: 30
[2026-01-08 18:18:04] 2026-01-08 17:17:05,241 | INFO     | sum of square deviations: 9327281860.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,245 | INFO     | sum of deviations: 17220691010.000004
[2026-01-08 18:18:04] 2026-01-08 17:17:05,245 | INFO     | mean x: 1767882527.0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,245 | INFO     | mean y: 2502872.3633440514
[2026-01-08 18:18:04] 2026-01-08 17:17:05,245 | INFO     | intersect: -3261487558.7615695
[2026-01-08 18:18:04] 2026-01-08 17:17:05,246 | INFO     | chi2: 0.0034017455166013852
[2026-01-08 18:18:04] 2026-01-08 17:17:05,246 | INFO     | current memory leak: 1.85 B/s (using 311 data points, chi2=0.00)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | ..............................
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | . Timing measurements:
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | . get job = 0 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | . initial setup = 16 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | . payload setup = 154 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,254 | INFO     | . stage-in = 0 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,255 | INFO     | . payload execution = 21334 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,255 | INFO     | . stage-out = 120 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,255 | INFO     | . log creation = 1 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,255 | INFO     | ..............................
[2026-01-08 18:18:04] 2026-01-08 17:17:05,434 | INFO     | 
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | job summary report
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | --------------------------------------------------
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | PanDA job id: 6962322662
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | task id: 47898826
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | errors: (none)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,435 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | pilot state: finished 
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | transexitcode: 0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | exeerrorcode: 0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | exeerrordiag: 
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | exitcode: 0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | exitmsg: OK
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | cpuconsumptiontime: 80012 s
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | nevents: 400
[2026-01-08 18:18:04] 2026-01-08 17:17:05,436 | INFO     | neventsw: 0
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | pid: 14135
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | pgrp: 14135
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | corecount: 8
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | event service: False
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | sizes: {0: 2283742, 1: 2283997, 2: 2283997, 12: 2284025, 23: 2284053, 34: 2284081, 44: 2284237, 55: 2284265, 66: 2284293, 77: 2284321, 88: 2284377, 98: 2284685, 10
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | --------------------------------------------------
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | 
[2026-01-08 18:18:04] 2026-01-08 17:17:05,437 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-08 18:18:04] 2026-01-08 17:17:05,540 | INFO     | time since job start (21950s) is within the limit (174528.0s)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,755 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,755 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,755 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,757 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:18:04] 2026-01-08 17:17:05,758 | INFO     | job 6962322662 has completed (purged errors)
[2026-01-08 18:18:04] 2026-01-08 17:17:05,758 | INFO     | overall cleanup function is called
[2026-01-08 18:18:04] 2026-01-08 17:17:06,767 | INFO     | --- collectZombieJob: --- 10, [14135]
[2026-01-08 18:18:04] 2026-01-08 17:17:06,768 | INFO     | zombie collector waiting for pid 14135
[2026-01-08 18:18:04] 2026-01-08 17:17:06,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:18:04] 2026-01-08 17:17:06,768 | INFO     | collected zombie processes
[2026-01-08 18:18:04] 2026-01-08 17:17:06,768 | INFO     | will attempt to kill all subprocesses of pid=14135
[2026-01-08 18:18:04] 2026-01-08 17:17:06,856 | INFO     | process IDs to be killed: [14135] (in reverse order)
[2026-01-08 18:18:04] 2026-01-08 17:17:07,047 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:18:04] 2026-01-08 17:17:07,048 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:18:04] 2026-01-08 17:17:07,050 | INFO     | did not find any defunct processes belonging to 14135
[2026-01-08 18:18:04] 2026-01-08 17:17:07,052 | INFO     | did not find any defunct processes belonging to 14135
[2026-01-08 18:18:04] 2026-01-08 17:17:07,052 | INFO     | ready for new job
[2026-01-08 18:18:04] 2026-01-08 17:17:07,052 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:18:04] 2026-01-08 17:17:07,054 | INFO     | ***************************************
[2026-01-08 18:18:04] 2026-01-08 17:17:07,055 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:18:04] 2026-01-08 17:17:07,055 | INFO     | ***************************************
[2026-01-08 18:18:04] 2026-01-08 17:17:07,055 | INFO     | 
[2026-01-08 18:18:04] 2026-01-08 17:17:07,056 | INFO     | pilot is running in a VM
[2026-01-08 18:18:04] 2026-01-08 17:17:07,056 | INFO     | architecture information:
[2026-01-08 18:18:04] 2026-01-08 17:17:07,064 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:18:04] 2026-01-08 17:17:07,262 | INFO     | cat /etc/os-release:
[2026-01-08 18:18:04] NAME="CentOS Linux"
[2026-01-08 18:18:04] VERSION="7 (Core)"
[2026-01-08 18:18:04] ID="centos"
[2026-01-08 18:18:04] ID_LIKE="rhel fedora"
[2026-01-08 18:18:04] VERSION_ID="7"
[2026-01-08 18:18:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:18:04] ANSI_COLOR="0;31"
[2026-01-08 18:18:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:18:04] HOME_URL="https://www.centos.org/"
[2026-01-08 18:18:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:18:04] 
[2026-01-08 18:18:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:18:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:18:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:18:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:18:04] 
[2026-01-08 18:18:04] 2026-01-08 17:17:07,262 | INFO     | ***************************************
[2026-01-08 18:18:04] 2026-01-08 17:17:07,766 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-08 18:18:04] 2026-01-08 17:17:07,961 | INFO     | sufficient remaining disk space (496649633792 B)
[2026-01-08 18:18:04] 2026-01-08 17:17:07,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:18:04] 2026-01-08 17:17:07,962 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:18:04] 2026-01-08 17:17:07,962 | INFO     | update_server=False
[2026-01-08 18:18:04] 2026-01-08 17:17:07,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:18:04] 2026-01-08 17:17:07,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:18:04] 2026-01-08 17:17:07,964 | INFO     | aborting loop
[2026-01-08 18:18:04] 2026-01-08 17:17:07,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:18:04] 2026-01-08 17:17:08,194 | INFO     | all job control threads have been joined
[2026-01-08 18:18:04] 2026-01-08 17:17:08,332 | INFO     | all data control threads have been joined
[2026-01-08 18:18:04] 2026-01-08 17:17:08,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:18:04] 2026-01-08 17:17:08,969 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:08,970 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,134 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,201 | INFO     | [job] control thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,247 | INFO     | all payload control threads have been joined
[2026-01-08 18:18:04] 2026-01-08 17:17:09,303 | INFO     | [job] validate thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,338 | INFO     | [data] control thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,347 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,375 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,434 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,870 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,965 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:09,973 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:10,049 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:10,254 | INFO     | [payload] control thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:10,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:18:04] 2026-01-08 17:17:11,458 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:12,762 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:18:04] 2026-01-08 17:17:38,669 | INFO     | PID=7631 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:18:04] 2026-01-08 17:17:38,669 | INFO     | .. there are 2 such processes running
[2026-01-08 18:18:04] 2026-01-08 17:17:38,669 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:18:04] 2026-01-08 17:17:38,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:18:04] 2026-01-08 17:17:38,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:18:04] 2026-01-08 17:17:52,772 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:18:04] 2026-01-08 17:17:54,330 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846875727680)>', '<ExcThread(monitor, started 139846567827200)>']
[2026-01-08 18:18:04] 2026-01-08 17:17:54,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:18:04] 2026-01-08 17:17:54,767 | INFO     | [monitor] control thread has ended
[2026-01-08 18:18:04] 2026-01-08 17:17:59,355 | INFO     | all workflow threads have been joined
[2026-01-08 18:18:04] 2026-01-08 17:17:59,356 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:18:04] 2026-01-08 17:17:59,356 | INFO     | traces error code: 0
[2026-01-08 18:18:04] 2026-01-08 17:17:59,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:18:04] 2026-01-08 17:17:59,917 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:18:04] 2026-01-08 17:17:59,993 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:18:04] 2026-01-08 17:18:00,090 [wrapper] pilotpid: 7631
[2026-01-08 18:18:04] 2026-01-08 17:18:00,157 [wrapper] Pilot exit status: 0
[2026-01-08 18:18:04] 2026-01-08 17:18:00,706 [wrapper] pandaids: 6962322662
[2026-01-08 18:18:04] 2026-01-08 17:18:01,667 [wrapper] cleanup supervisor_pilot 13420 7632
[2026-01-08 18:18:04] 2026-01-08 17:18:01,767 [wrapper] Test setup, not cleaning
[2026-01-08 18:18:04] 2026-01-08 17:18:01,883 [wrapper] apfmon messages muted
[2026-01-08 18:18:04] 2026-01-08 17:18:01,981 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:18:04] 2026-01-08 17:18:02,092 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:18:04]  *** Error codes and diagnostics ***
[2026-01-08 18:18:04]     "exeErrorCode": 0,
[2026-01-08 18:18:04]     "exeErrorDiag": "",
[2026-01-08 18:18:04]     "pilotErrorCode": 0,
[2026-01-08 18:18:04]     "pilotErrorDiag": "",
[2026-01-08 18:18:04]  *** Listing of results directory ***
[2026-01-08 18:18:04] total 448452
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 18:18:04] -rwx------. 1 boinc boinc     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:12 queuedata.json
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc       100 Jan  8 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:18:04] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 12:06 run_atlas
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc       105 Jan  8 12:06 job.xml
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc      6389 Jan  8 12:06 init_data.xml
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc 225676616 Jan  8 12:06 EVNT.47898824._000724.pool.root.1
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:06 start_atlas.sh
[2026-01-08 18:18:04] drwxrwx--x. 2 boinc boinc        68 Jan  8 12:06 shared
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc    592405 Jan  8 12:06 input.tar.gz
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc         0 Jan  8 12:06 boinc_lockfile
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc      2519 Jan  8 12:06 pandaJob.out
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc    989835 Jan  8 12:11 agis_schedconf.cvmfs.json
[2026-01-08 18:18:04] drwx------. 5 boinc boinc      4096 Jan  8 12:11 pilot3
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc 222712705 Jan  8 18:11 HITS.47898826._015497.pool.root.1
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc       531 Jan  8 18:11 boinc_task_state.xml
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc      1016 Jan  8 18:13 memory_monitor_summary.json
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc   1516240 Jan  8 18:13 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc    548783 Jan  8 18:15 log.47898826._015497.job.log.tgz.1
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc        95 Jan  8 18:16 pilot_heartbeat.json
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc      7784 Jan  8 18:17 heartbeat.json
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc      8192 Jan  8 18:17 boinc_mmap_file
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc        28 Jan  8 18:17 wrapper_checkpoint.txt
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc      4883 Jan  8 18:17 pilotlog.txt
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc   2917470 Jan  8 18:18 log.47898826._015497.job.log.1
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc       357 Jan  8 18:18 output.list
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc       620 Jan  8 18:18 runtime_log
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc   3481600 Jan  8 18:18 result.tar.gz
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc      8817 Jan  8 18:18 runtime_log.err
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc       657 Jan  8 18:18 B6vMDmXupx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ2iKDmK2IMXo.diag
[2026-01-08 18:18:04] -rw-r--r--. 1 boinc boinc     20777 Jan  8 18:18 stderr.txt
[2026-01-08 18:18:04] HITS file was successfully produced:
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc 222712705 Jan  8 18:11 shared/HITS.pool.root.1
[2026-01-08 18:18:04]  *** Contents of shared directory: ***
[2026-01-08 18:18:04] total 441880
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc 225676616 Jan  8 12:06 ATLAS.root_0
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc     15847 Jan  8 12:06 start_atlas.sh
[2026-01-08 18:18:04] -rw-r--r--. 2 boinc boinc    592405 Jan  8 12:06 input.tar.gz
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc 222712705 Jan  8 18:11 HITS.pool.root.1
[2026-01-08 18:18:04] -rw-------. 1 boinc boinc   3481600 Jan  8 18:18 result.tar.gz
18:18:05 (3891): run_atlas exited; CPU time 80249.277044
18:18:05 (3891): called boinc_finish(0)

</stderr_txt>
]]>

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