Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:26:19 (31068): wrapper (7.7.26015): starting
11:26:19 (31068): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 11:26:19] Arguments: --nthreads 8
[2026-01-08 11:26:19] Threads: 8
[2026-01-08 11:26:19] Checking for CVMFS
[2026-01-08 11:26:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:26:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:26:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:26:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:26:22] 2.11.2.0 24551 33852 118616 154900 3 60 24548674 25165825 96 130560 0 14717530 99.792 10791713 3531 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 11:26:22] CVMFS is ok
[2026-01-08 11:26:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:26:22] Checking for apptainer binary...
[2026-01-08 11:26:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:26:22] Running /usr/bin/apptainer --version
[2026-01-08 11:26:22] apptainer version 1.3.2-1.el7
[2026-01-08 11:26:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:26:45] cg-vwn415.simple-grid.lan
[2026-01-08 11:26:45] apptainer works
[2026-01-08 11:26:45] Set ATHENA_PROC_NUMBER=8
[2026-01-08 11:26:45] Set ATHENA_CORE_NUMBER=8
[2026-01-08 11:26:45] Starting ATLAS job with PandaID=6962323254
[2026-01-08 11:26:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:32:10]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:32:10] 2026-01-08 16:31:10,234 | INFO     | extracted standard info from prmon json
[2026-01-08 17:32:10] 2026-01-08 16:31:10,234 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:32:10] 2026-01-08 16:31:10,234 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:32:10] 2026-01-08 16:31:10,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:32:10] 2026-01-08 16:31:10,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:32:10] 2026-01-08 16:31:10,242 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:32:10] 2026-01-08 16:31:10,243 | INFO     | sum of square deviations: 12512874612.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,247 | INFO     | sum of deviations: 226192742140.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,247 | INFO     | mean x: 1767879267.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,248 | INFO     | mean y: 2426722.256559767
[2026-01-08 17:32:10] 2026-01-08 16:31:10,248 | INFO     | intersect: -31955174674.28361
[2026-01-08 17:32:10] 2026-01-08 16:31:10,248 | INFO     | chi2: 8.033015673571327
[2026-01-08 17:32:10] 2026-01-08 16:31:10,249 | INFO     | sum of square deviations: 11973599384.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,253 | INFO     | sum of deviations: 245072706502.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,253 | INFO     | mean x: 1767879114.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,253 | INFO     | mean y: 2431985.0384615385
[2026-01-08 17:32:10] 2026-01-08 16:31:10,253 | INFO     | intersect: -36182085756.60388
[2026-01-08 17:32:10] 2026-01-08 16:31:10,254 | INFO     | chi2: 7.30331207790352
[2026-01-08 17:32:10] 2026-01-08 16:31:10,254 | INFO     | current chi2=7.30331207790352 (change=9.08380644729148 %)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,254 | INFO     | right removable region: 337
[2026-01-08 17:32:10] 2026-01-08 16:31:10,255 | INFO     | sum of square deviations: 11973599384.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,259 | INFO     | sum of deviations: 107192049737.00002
[2026-01-08 17:32:10] 2026-01-08 16:31:10,259 | INFO     | mean x: 1767879419.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,259 | INFO     | mean y: 2460358.3846153845
[2026-01-08 17:32:10] 2026-01-08 16:31:10,259 | INFO     | intersect: -15824244091.855856
[2026-01-08 17:32:10] 2026-01-08 16:31:10,260 | INFO     | chi2: 3.231705287219476
[2026-01-08 17:32:10] 2026-01-08 16:31:10,260 | INFO     | current chi2=3.231705287219476 (change=59.769712664052086 %)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,261 | INFO     | sum of square deviations: 11450045382.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,264 | INFO     | sum of deviations: 22154255902.99999
[2026-01-08 17:32:10] 2026-01-08 16:31:10,264 | INFO     | mean x: 1767879572.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,265 | INFO     | mean y: 2485090.5315315314
[2026-01-08 17:32:10] 2026-01-08 16:31:10,265 | INFO     | intersect: -3418117635.231018
[2026-01-08 17:32:10] 2026-01-08 16:31:10,265 | INFO     | chi2: 0.8815948263230454
[2026-01-08 17:32:10] 2026-01-08 16:31:10,265 | INFO     | current chi2=0.8815948263230454 (change=72.7204448434851 %)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,266 | INFO     | sum of square deviations: 10941980042.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,270 | INFO     | sum of deviations: 8741410806.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,270 | INFO     | mean x: 1767879724.5
[2026-01-08 17:32:10] 2026-01-08 16:31:10,270 | INFO     | mean y: 2489107.125
[2026-01-08 17:32:10] 2026-01-08 16:31:10,270 | INFO     | intersect: -1409847861.9627147
[2026-01-08 17:32:10] 2026-01-08 16:31:10,271 | INFO     | chi2: 0.8089970780351593
[2026-01-08 17:32:10] 2026-01-08 16:31:10,271 | INFO     | current chi2=0.8089970780351593 (change=8.234820137350026 %)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,271 | INFO     | left removable region: 30
[2026-01-08 17:32:10] 2026-01-08 16:31:10,272 | INFO     | sum of square deviations: 8971993338.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,275 | INFO     | sum of deviations: 21497129742.999996
[2026-01-08 17:32:10] 2026-01-08 16:31:10,275 | INFO     | mean x: 1767879999.0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,275 | INFO     | mean y: 2498202.306188925
[2026-01-08 17:32:10] 2026-01-08 16:31:10,275 | INFO     | intersect: -4233388325.5620403
[2026-01-08 17:32:10] 2026-01-08 16:31:10,276 | INFO     | chi2: 0.0006229860704684909
[2026-01-08 17:32:10] 2026-01-08 16:31:10,276 | INFO     | current memory leak: 2.40 B/s (using 307 data points, chi2=0.00)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,277 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,277 | INFO     | ..............................
[2026-01-08 17:32:10] 2026-01-08 16:31:10,277 | INFO     | . Timing measurements:
[2026-01-08 17:32:10] 2026-01-08 16:31:10,277 | INFO     | . get job = 0 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . initial setup = 8 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . payload setup = 153 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . stage-in = 0 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . payload execution = 21082 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . stage-out = 5 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | . log creation = 1 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,278 | INFO     | ..............................
[2026-01-08 17:32:10] 2026-01-08 16:31:10,673 | INFO     | 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | job summary report
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | --------------------------------------------------
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | PanDA job id: 6962323254
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | task id: 47898826
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | errors: (none)
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,674 | INFO     | pilot state: finished 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | transexitcode: 0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | exeerrorcode: 0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | exeerrordiag: 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | exitcode: 0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | exitmsg: OK
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | cpuconsumptiontime: 78980 s
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | nevents: 400
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | neventsw: 0
[2026-01-08 17:32:10] 2026-01-08 16:31:10,675 | INFO     | pid: 8854
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | pgrp: 8854
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | corecount: 8
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | event service: False
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | sizes: {0: 2283742, 1: 2283997, 12: 2283997, 23: 2284025, 34: 2284053, 44: 2284081, 55: 2284237, 66: 2284265, 76: 2284293, 87: 2284349, 98: 2284377, 109: 2284975, 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | --------------------------------------------------
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | 
[2026-01-08 17:32:10] 2026-01-08 16:31:10,676 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-08 17:32:10] 2026-01-08 16:31:10,826 | INFO     | time since job start (21587s) is within the limit (174528.0s)
[2026-01-08 17:32:10] 2026-01-08 16:31:11,102 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,102 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,104 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:32:10] 2026-01-08 16:31:11,105 | INFO     | job 6962323254 has completed (purged errors)
[2026-01-08 17:32:10] 2026-01-08 16:31:11,105 | INFO     | overall cleanup function is called
[2026-01-08 17:32:10] 2026-01-08 16:31:12,113 | INFO     | --- collectZombieJob: --- 10, [8854]
[2026-01-08 17:32:10] 2026-01-08 16:31:12,114 | INFO     | zombie collector waiting for pid 8854
[2026-01-08 17:32:10] 2026-01-08 16:31:12,114 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:32:10] 2026-01-08 16:31:12,114 | INFO     | collected zombie processes
[2026-01-08 17:32:10] 2026-01-08 16:31:12,114 | INFO     | will attempt to kill all subprocesses of pid=8854
[2026-01-08 17:32:10] 2026-01-08 16:31:12,201 | INFO     | process IDs to be killed: [8854] (in reverse order)
[2026-01-08 17:32:10] 2026-01-08 16:31:13,081 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:32:10] 2026-01-08 16:31:13,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:32:10] 2026-01-08 16:31:13,083 | INFO     | did not find any defunct processes belonging to 8854
[2026-01-08 17:32:10] 2026-01-08 16:31:13,085 | INFO     | did not find any defunct processes belonging to 8854
[2026-01-08 17:32:10] 2026-01-08 16:31:13,085 | INFO     | ready for new job
[2026-01-08 17:32:10] 2026-01-08 16:31:13,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:32:10] 2026-01-08 16:31:13,088 | INFO     | ***************************************
[2026-01-08 17:32:10] 2026-01-08 16:31:13,088 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:32:10] 2026-01-08 16:31:13,088 | INFO     | ***************************************
[2026-01-08 17:32:10] 2026-01-08 16:31:13,088 | INFO     | 
[2026-01-08 17:32:10] 2026-01-08 16:31:13,089 | INFO     | pilot is running in a VM
[2026-01-08 17:32:10] 2026-01-08 16:31:13,089 | INFO     | architecture information:
[2026-01-08 17:32:10] 2026-01-08 16:31:13,102 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:32:10] 2026-01-08 16:31:13,409 | INFO     | cat /etc/os-release:
[2026-01-08 17:32:10] NAME="CentOS Linux"
[2026-01-08 17:32:10] VERSION="7 (Core)"
[2026-01-08 17:32:10] ID="centos"
[2026-01-08 17:32:10] ID_LIKE="rhel fedora"
[2026-01-08 17:32:10] VERSION_ID="7"
[2026-01-08 17:32:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:32:10] ANSI_COLOR="0;31"
[2026-01-08 17:32:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:32:10] HOME_URL="https://www.centos.org/"
[2026-01-08 17:32:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:32:10] 
[2026-01-08 17:32:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:32:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:32:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:32:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:32:10] 
[2026-01-08 17:32:10] 2026-01-08 16:31:13,409 | INFO     | ***************************************
[2026-01-08 17:32:10] 2026-01-08 16:31:13,913 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-08 17:32:10] 2026-01-08 16:31:14,163 | INFO     | sufficient remaining disk space (496579379200 B)
[2026-01-08 17:32:10] 2026-01-08 16:31:14,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:32:10] 2026-01-08 16:31:14,164 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:32:10] 2026-01-08 16:31:14,164 | INFO     | update_server=False
[2026-01-08 17:32:10] 2026-01-08 16:31:14,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:32:10] 2026-01-08 16:31:14,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:32:10] 2026-01-08 16:31:14,280 | INFO     | all data control threads have been joined
[2026-01-08 17:32:10] 2026-01-08 16:31:14,291 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 17:32:10] 2026-01-08 16:31:14,292 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 17:32:10] 2026-01-08 16:31:14,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:32:10] 2026-01-08 16:31:14,292 | INFO     | will abort loop
[2026-01-08 17:32:10] 2026-01-08 16:31:14,886 | INFO     | all payload control threads have been joined
[2026-01-08 17:32:10] 2026-01-08 16:31:15,084 | INFO     | all job control threads have been joined
[2026-01-08 17:32:10] 2026-01-08 16:31:15,173 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,287 | INFO     | [data] control thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,298 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:32:10] 2026-01-08 16:31:15,620 | INFO     | [job] validate thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,724 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,893 | INFO     | [payload] control thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:15,929 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,041 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,091 | INFO     | [job] control thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,172 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,305 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,394 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,448 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:32:10] 2026-01-08 16:31:16,500 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,549 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:16,564 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:20,457 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:32:10] 2026-01-08 16:31:23,060 [wrapper] supervise_pilot (15 min periods counter: 25)
[2026-01-08 17:32:10] 2026-01-08 16:31:43,972 | INFO     | PID=2403 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 17:32:10] 2026-01-08 16:31:43,972 | INFO     | .. there are 2 such processes running
[2026-01-08 17:32:10] 2026-01-08 16:31:43,973 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:32:10] 2026-01-08 16:31:43,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:32:10] 2026-01-08 16:31:43,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:32:10] 2026-01-08 16:32:00,060 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:32:10] 2026-01-08 16:32:00,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681254418240)>', '<ExcThread(monitor, started 140680437425920)>']
[2026-01-08 17:32:10] 2026-01-08 16:32:01,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:32:10] 2026-01-08 16:32:01,074 | INFO     | [monitor] control thread has ended
[2026-01-08 17:32:10] 2026-01-08 16:32:05,160 | INFO     | all workflow threads have been joined
[2026-01-08 17:32:10] 2026-01-08 16:32:05,161 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:32:10] 2026-01-08 16:32:05,161 | INFO     | traces error code: 0
[2026-01-08 17:32:10] 2026-01-08 16:32:05,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:32:10] 2026-01-08 16:32:05,575 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:32:10] 2026-01-08 16:32:05,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:32:10] 2026-01-08 16:32:05,785 [wrapper] pilotpid: 2403
[2026-01-08 17:32:10] 2026-01-08 16:32:05,908 [wrapper] Pilot exit status: 0
[2026-01-08 17:32:10] 2026-01-08 16:32:06,377 [wrapper] pandaids: 6962323254
[2026-01-08 17:32:10] 2026-01-08 16:32:07,442 [wrapper] cleanup supervisor_pilot 10465 2404
[2026-01-08 17:32:10] 2026-01-08 16:32:07,504 [wrapper] Test setup, not cleaning
[2026-01-08 17:32:10] 2026-01-08 16:32:07,569 [wrapper] apfmon messages muted
[2026-01-08 17:32:10] 2026-01-08 16:32:07,665 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:32:10] 2026-01-08 16:32:07,775 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:32:10]  *** Error codes and diagnostics ***
[2026-01-08 17:32:10]     "exeErrorCode": 0,
[2026-01-08 17:32:10]     "exeErrorDiag": "",
[2026-01-08 17:32:10]     "pilotErrorCode": 0,
[2026-01-08 17:32:10]     "pilotErrorDiag": "",
[2026-01-08 17:32:10]  *** Listing of results directory ***
[2026-01-08 17:32:10] total 438084
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 17:32:10] -rwx------. 1 boinc boinc     36322 Jan  7 22:06 runpilot2-wrapper.sh
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:16 queuedata.json
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc       100 Jan  8 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:32:10] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 11:26 run_atlas
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc       105 Jan  8 11:26 job.xml
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc      6390 Jan  8 11:26 init_data.xml
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc 224261699 Jan  8 11:26 EVNT.47898824._000743.pool.root.1
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc     15847 Jan  8 11:26 start_atlas.sh
[2026-01-08 17:32:10] drwxrwx--x. 2 boinc boinc        68 Jan  8 11:26 shared
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc    592403 Jan  8 11:26 input.tar.gz
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc         0 Jan  8 11:26 boinc_lockfile
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc      2519 Jan  8 11:26 pandaJob.out
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc    989835 Jan  8 11:31 agis_schedconf.cvmfs.json
[2026-01-08 17:32:10] drwx------. 5 boinc boinc      4096 Jan  8 11:31 pilot3
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc 213586956 Jan  8 17:27 HITS.47898826._015984.pool.root.1
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc       531 Jan  8 17:28 boinc_task_state.xml
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc      1018 Jan  8 17:29 memory_monitor_summary.json
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc   1516240 Jan  8 17:29 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc    557399 Jan  8 17:29 log.47898826._015984.job.log.tgz.1
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc        95 Jan  8 17:30 pilot_heartbeat.json
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc      7779 Jan  8 17:31 heartbeat.json
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc      8192 Jan  8 17:31 boinc_mmap_file
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc        28 Jan  8 17:31 wrapper_checkpoint.txt
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc      5069 Jan  8 17:32 pilotlog.txt
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc   2866460 Jan  8 17:32 log.47898826._015984.job.log.1
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc       357 Jan  8 17:32 output.list
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc       620 Jan  8 17:32 runtime_log
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc   3440640 Jan  8 17:32 result.tar.gz
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc       657 Jan  8 17:32 YaIMDmjupx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY4iKDm3HEBhm.diag
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc      8817 Jan  8 17:32 runtime_log.err
[2026-01-08 17:32:10] -rw-r--r--. 1 boinc boinc     20705 Jan  8 17:32 stderr.txt
[2026-01-08 17:32:10] HITS file was successfully produced:
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc 213586956 Jan  8 17:27 shared/HITS.pool.root.1
[2026-01-08 17:32:10]  *** Contents of shared directory: ***
[2026-01-08 17:32:10] total 431548
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc 224261699 Jan  8 11:26 ATLAS.root_0
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc     15847 Jan  8 11:26 start_atlas.sh
[2026-01-08 17:32:10] -rw-r--r--. 2 boinc boinc    592403 Jan  8 11:26 input.tar.gz
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc 213586956 Jan  8 17:27 HITS.pool.root.1
[2026-01-08 17:32:10] -rw-------. 1 boinc boinc   3440640 Jan  8 17:32 result.tar.gz
17:32:12 (31068): run_atlas exited; CPU time 79202.639433
17:32:12 (31068): called boinc_finish(0)

</stderr_txt>
]]>

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