Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:12:19 (3635346): wrapper (7.7.26015): starting
21:12:19 (3635346): wrapper: running run_atlas (--nthreads 11)
[2026-01-07 21:12:19] Arguments: --nthreads 11
[2026-01-07 21:12:19] Threads: 11
[2026-01-07 21:12:19] Checking for CVMFS
[2026-01-07 21:12:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 21:12:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 21:12:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 21:12:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 21:12:20] 2.13.3.0 9943 18707 168844 154886 2 153 22009227 39288833 4423 16776704 0 8303361 99.471 13007922 38909 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-07 21:12:20] CVMFS is ok
[2026-01-07 21:12:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 21:12:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 21:12:20] Further information can be found at the LHC@home message board.
[2026-01-07 21:12:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 21:12:20] Checking for apptainer binary...
[2026-01-07 21:12:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 21:12:20] Running /usr/bin/apptainer --version
[2026-01-07 21:12:20] apptainer version 1.4.5-2.el9
[2026-01-07 21:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 21:12:20] c-210-6.aglt2.org
[2026-01-07 21:12:20] apptainer works
[2026-01-07 21:12:20] Set ATHENA_PROC_NUMBER=11
[2026-01-07 21:12:20] Set ATHENA_CORE_NUMBER=11
[2026-01-07 21:12:20] Starting ATLAS job with PandaID=6962319961
[2026-01-07 21:12:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 09:28:21]  *** The last 200 lines of the pilot log: ***
[2026-01-08 09:28:22] 2026-01-08 14:27:14,859 | INFO     | time since job start (44067s) is within the limit (174528.0s)
[2026-01-08 09:28:22] 2026-01-08 14:27:14,968 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 09:28:22] 2026-01-08 14:27:14,981 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1892749999997
[2026-01-08 09:28:22] 2026-01-08 14:27:14,991 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962319961/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 09:28:22] 2026-01-08 14:27:14,992 | INFO     | extracted standard info from prmon json
[2026-01-08 09:28:22] 2026-01-08 14:27:14,992 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 09:28:22] 2026-01-08 14:27:14,992 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 09:28:22] 2026-01-08 14:27:14,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 09:28:22] 2026-01-08 14:27:14,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 09:28:22] 2026-01-08 14:27:15,024 | INFO     | fitting pss+swap vs Time
[2026-01-08 09:28:22] 2026-01-08 14:27:15,031 | INFO     | sum of square deviations: 115255447783.86377
[2026-01-08 09:28:22] 2026-01-08 14:27:15,060 | INFO     | sum of deviations: 209463972379.6176
[2026-01-08 09:28:22] 2026-01-08 14:27:15,060 | INFO     | mean x: 1767860419.154381
[2026-01-08 09:28:22] 2026-01-08 14:27:15,060 | INFO     | mean y: 2640839.9944367176
[2026-01-08 09:28:22] 2026-01-08 14:27:15,060 | INFO     | intersect: -3210249076.525556
[2026-01-08 09:28:22] 2026-01-08 14:27:15,063 | INFO     | chi2: 4.147329028729165
[2026-01-08 09:28:22] 2026-01-08 14:27:15,064 | INFO     | sum of square deviations: 112867782634.29831
[2026-01-08 09:28:22] 2026-01-08 14:27:15,096 | INFO     | sum of deviations: 304408324504.9581
[2026-01-08 09:28:22] 2026-01-08 14:27:15,096 | INFO     | mean x: 1767860266.659664
[2026-01-08 09:28:22] 2026-01-08 14:27:15,097 | INFO     | mean y: 2646877.9915966387
[2026-01-08 09:28:22] 2026-01-08 14:27:15,097 | INFO     | intersect: -4765333578.188848
[2026-01-08 09:28:22] 2026-01-08 14:27:15,098 | INFO     | chi2: 2.7477698974861675
[2026-01-08 09:28:22] 2026-01-08 14:27:15,098 | INFO     | current chi2=2.7477698974861675 (change=33.74603561829899 %)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,099 | INFO     | sum of square deviations: 110513414761.02661
[2026-01-08 09:28:22] 2026-01-08 14:27:15,131 | INFO     | sum of deviations: 301140621429.7874
[2026-01-08 09:28:22] 2026-01-08 14:27:15,132 | INFO     | mean x: 1767860114.1678421
[2026-01-08 09:28:22] 2026-01-08 14:27:15,132 | INFO     | mean y: 2646666.4555712272
[2026-01-08 09:28:22] 2026-01-08 14:27:15,132 | INFO     | intersect: -4814637231.002865
[2026-01-08 09:28:22] 2026-01-08 14:27:15,133 | INFO     | chi2: 2.7479487054040415
[2026-01-08 09:28:22] 2026-01-08 14:27:15,133 | INFO     | current chi2=2.7479487054040415 (change=-0.006507383243317837 %)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,133 | INFO     | right removable region: 708
[2026-01-08 09:28:22] 2026-01-08 14:27:15,134 | INFO     | sum of square deviations: 112867319457.32753
[2026-01-08 09:28:22] 2026-01-08 14:27:15,163 | INFO     | sum of deviations: 36652037423.95798
[2026-01-08 09:28:22] 2026-01-08 14:27:15,164 | INFO     | mean x: 1767860571.6638656
[2026-01-08 09:28:22] 2026-01-08 14:27:15,164 | INFO     | mean y: 2651861.31232493
[2026-01-08 09:28:22] 2026-01-08 14:27:15,164 | INFO     | intersect: -571435413.414364
[2026-01-08 09:28:22] 2026-01-08 14:27:15,169 | INFO     | chi2: 2.106451587552253
[2026-01-08 09:28:22] 2026-01-08 14:27:15,169 | INFO     | current chi2=2.106451587552253 (change=49.209441234091884 %)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,171 | INFO     | sum of square deviations: 110512575769.02666
[2026-01-08 09:28:22] 2026-01-08 14:27:15,202 | INFO     | sum of deviations: -23322333272.237
[2026-01-08 09:28:22] 2026-01-08 14:27:15,203 | INFO     | mean x: 1767860724.1678421
[2026-01-08 09:28:22] 2026-01-08 14:27:15,203 | INFO     | mean y: 2655743.8843441466
[2026-01-08 09:28:22] 2026-01-08 14:27:15,203 | INFO     | intersect: 375741220.3654413
[2026-01-08 09:28:22] 2026-01-08 14:27:15,204 | INFO     | chi2: 1.8871080685872625
[2026-01-08 09:28:22] 2026-01-08 14:27:15,204 | INFO     | current chi2=1.8871080685872625 (change=10.412939004208152 %)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,204 | INFO     | left removable region: 20
[2026-01-08 09:28:22] 2026-01-08 14:27:15,205 | INFO     | sum of square deviations: 100980537120.31967
[2026-01-08 09:28:22] 2026-01-08 14:27:15,236 | INFO     | sum of deviations: 16448460392.735445
[2026-01-08 09:28:22] 2026-01-08 14:27:15,236 | INFO     | mean x: 1767860693.7005813
[2026-01-08 09:28:22] 2026-01-08 14:27:15,236 | INFO     | mean y: 2665494.4113372094
[2026-01-08 09:28:22] 2026-01-08 14:27:15,236 | INFO     | intersect: -285296794.4558758
[2026-01-08 09:28:22] 2026-01-08 14:27:15,237 | INFO     | chi2: 0.36059481186651915
[2026-01-08 09:28:22] 2026-01-08 14:27:15,238 | INFO     | current memory leak: 0.16 B/s (using 688 data points, chi2=0.36)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,239 | INFO     | could have reported an average CPU frequency of 2600 MHz (27 samples)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,243 | INFO     | ..............................
[2026-01-08 09:28:22] 2026-01-08 14:27:15,243 | INFO     | . Timing measurements:
[2026-01-08 09:28:22] 2026-01-08 14:27:15,243 | INFO     | . get job = 0 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,243 | INFO     | . initial setup = 5 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | . payload setup = 49 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | . stage-in = 0 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | . payload execution = 43884 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | . stage-out = 11 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | . log creation = 1 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,244 | INFO     | ..............................
[2026-01-08 09:28:22] 2026-01-08 14:27:15,942 | INFO     | 
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | job summary report
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | --------------------------------------------------
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | PanDA job id: 6962319961
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | task id: 47898826
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | errors: (none)
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | pilot state: finished 
[2026-01-08 09:28:22] 2026-01-08 14:27:15,943 | INFO     | transexitcode: 0
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | exeerrorcode: 0
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | exeerrordiag: 
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | exitcode: 0
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | exitmsg: OK
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | cpuconsumptiontime: 70471 s
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | nevents: 400
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | neventsw: 0
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | pid: 3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | pgrp: 3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | corecount: 11
[2026-01-08 09:28:22] 2026-01-08 14:27:15,944 | INFO     | event service: False
[2026-01-08 09:28:22] 2026-01-08 14:27:15,945 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 23: 2284025, 27: 2284315, 34: 2284343, 43938: 2328479, 43939: 2328478, 43952: 2337532, 43954: 2337588, 44000: 2337782}
[2026-01-08 09:28:22] 2026-01-08 14:27:15,945 | INFO     | --------------------------------------------------
[2026-01-08 09:28:22] 2026-01-08 14:27:15,945 | INFO     | 
[2026-01-08 09:28:22] 2026-01-08 14:27:15,945 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 09:28:22] 2026-01-08 14:27:16,255 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,257 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 09:28:22] 2026-01-08 14:27:16,258 | INFO     | job 6962319961 has completed (purged errors)
[2026-01-08 09:28:22] 2026-01-08 14:27:16,258 | INFO     | overall cleanup function is called
[2026-01-08 09:28:22] 2026-01-08 14:27:17,275 | INFO     | --- collectZombieJob: --- 10, [3649495]
[2026-01-08 09:28:22] 2026-01-08 14:27:17,275 | INFO     | zombie collector waiting for pid 3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:17,275 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 09:28:22] 2026-01-08 14:27:17,275 | INFO     | collected zombie processes
[2026-01-08 09:28:22] 2026-01-08 14:27:17,276 | INFO     | will attempt to kill all subprocesses of pid=3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:18,073 | INFO     | process IDs to be killed: [3649495] (in reverse order)
[2026-01-08 09:28:22] 2026-01-08 14:27:18,182 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 09:28:22] 2026-01-08 14:27:18,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 09:28:22] 2026-01-08 14:27:18,196 | INFO     | did not find any defunct processes belonging to 3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:18,211 | INFO     | did not find any defunct processes belonging to 3649495
[2026-01-08 09:28:22] 2026-01-08 14:27:18,212 | INFO     | ready for new job
[2026-01-08 09:28:22] 2026-01-08 14:27:18,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 09:28:22] 2026-01-08 14:27:18,219 | INFO     | ***************************************
[2026-01-08 09:28:22] 2026-01-08 14:27:18,219 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 09:28:22] 2026-01-08 14:27:18,220 | INFO     | ***************************************
[2026-01-08 09:28:22] 2026-01-08 14:27:18,220 | INFO     | 
[2026-01-08 09:28:22] 2026-01-08 14:27:18,228 | INFO     | architecture information:
[2026-01-08 09:28:22] 2026-01-08 14:27:18,228 | INFO     | executing command: cat /etc/os-release
[2026-01-08 09:28:22] 2026-01-08 14:27:18,425 | INFO     | cat /etc/os-release:
[2026-01-08 09:28:22] NAME="CentOS Linux"
[2026-01-08 09:28:22] VERSION="7 (Core)"
[2026-01-08 09:28:22] ID="centos"
[2026-01-08 09:28:22] ID_LIKE="rhel fedora"
[2026-01-08 09:28:22] VERSION_ID="7"
[2026-01-08 09:28:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 09:28:22] ANSI_COLOR="0;31"
[2026-01-08 09:28:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 09:28:22] HOME_URL="https://www.centos.org/"
[2026-01-08 09:28:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 09:28:22] 
[2026-01-08 09:28:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 09:28:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 09:28:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 09:28:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 09:28:22] 
[2026-01-08 09:28:22] 2026-01-08 14:27:18,426 | INFO     | ***************************************
[2026-01-08 09:28:22] 2026-01-08 14:27:18,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 09:28:22] 2026-01-08 14:27:19,081 | INFO     | sufficient remaining disk space (52569309184 B)
[2026-01-08 09:28:22] 2026-01-08 14:27:19,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 09:28:22] 2026-01-08 14:27:19,082 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 09:28:22] 2026-01-08 14:27:19,082 | INFO     | update_server=False
[2026-01-08 09:28:22] 2026-01-08 14:27:19,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 09:28:22] 2026-01-08 14:27:19,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:28:22] 2026-01-08 14:27:19,083 | INFO     | aborting loop
[2026-01-08 09:28:22] 2026-01-08 14:27:19,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 09:28:22] 2026-01-08 14:27:19,778 | INFO     | all data control threads have been joined
[2026-01-08 09:28:22] 2026-01-08 14:27:20,088 | INFO     | [job] retrieve thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:20,089 | INFO     | [job] job monitor thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:20,320 | INFO     | [payload] failed_post thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:20,537 | INFO     | all payload control threads have been joined
[2026-01-08 09:28:22] 2026-01-08 14:27:20,737 | INFO     | all job control threads have been joined
[2026-01-08 09:28:22] 2026-01-08 14:27:20,828 | INFO     | [data] control thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:20,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:28:22] 2026-01-08 14:27:21,005 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,009 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,010 | INFO     | [job] validate thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,014 | INFO     | [data] copytool_in thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,019 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,089 | INFO     | [data] copytool_out thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,136 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 09:28:22] 2026-01-08 14:27:21,501 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,543 | INFO     | [payload] control thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,639 | INFO     | [payload] validate_post thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:21,742 | INFO     | [job] control thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:22,018 | INFO     | [job] queue monitor thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:25,201 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 09:28:22] 2026-01-08 14:27:49,560 | INFO     | PID=3639012 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 09:28:22] 2026-01-08 14:27:49,560 | INFO     | .. there are 8 such processes running
[2026-01-08 09:28:22] 2026-01-08 14:27:49,560 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 09:28:22] 2026-01-08 14:27:49,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 09:28:22] 2026-01-08 14:27:49,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 09:28:22] 2026-01-08 14:27:54,348 [wrapper] supervise_pilot (15 min periods counter: 50)
[2026-01-08 09:28:22] 2026-01-08 14:28:12,809 | INFO     | [monitor] cgroup control has ended
[2026-01-08 09:28:22] 2026-01-08 14:28:12,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139873614534464)>', '<ExcThread(monitor, started 139873243617024)>']
[2026-01-08 09:28:22] 2026-01-08 14:28:13,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 09:28:22] 2026-01-08 14:28:13,754 | INFO     | [monitor] control thread has ended
[2026-01-08 09:28:22] 2026-01-08 14:28:18,007 | INFO     | all workflow threads have been joined
[2026-01-08 09:28:22] 2026-01-08 14:28:18,007 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 09:28:22] 2026-01-08 14:28:18,008 | INFO     | traces error code: 0
[2026-01-08 09:28:22] 2026-01-08 14:28:18,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 09:28:22] 2026-01-08 14:28:19,922 [wrapper] ==== pilot stdout END ====
[2026-01-08 09:28:22] 2026-01-08 14:28:19,975 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 09:28:22] 2026-01-08 14:28:20,012 [wrapper] pilotpid: 3639012
[2026-01-08 09:28:22] 2026-01-08 14:28:20,049 [wrapper] Pilot exit status: 0
[2026-01-08 09:28:22] 2026-01-08 14:28:20,184 [wrapper] pandaids: 6962319961
[2026-01-08 09:28:22] 2026-01-08 14:28:20,857 [wrapper] cleanup supervisor_pilot  534457 3639013
[2026-01-08 09:28:22] 2026-01-08 14:28:20,898 [wrapper] Test setup, not cleaning
[2026-01-08 09:28:22] 2026-01-08 14:28:20,946 [wrapper] apfmon messages muted
[2026-01-08 09:28:22] 2026-01-08 14:28:20,973 [wrapper] ==== wrapper stdout END ====
[2026-01-08 09:28:22] 2026-01-08 14:28:21,068 [wrapper] ==== wrapper stderr END ====
[2026-01-08 09:28:22]  *** Error codes and diagnostics ***
[2026-01-08 09:28:22]     "exeErrorCode": 0,
[2026-01-08 09:28:22]     "exeErrorDiag": "",
[2026-01-08 09:28:22]     "pilotErrorCode": 0,
[2026-01-08 09:28:22]     "pilotErrorDiag": "",
[2026-01-08 09:28:22]  *** Listing of results directory ***
[2026-01-08 09:28:22] total 447780
[2026-01-08 09:28:22] -rwx------. 1 boincer umatlas     36322 Jan  7 15:59 runpilot2-wrapper.sh
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:02 queuedata.json
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas       100 Jan  7 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 09:28:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  7 21:12 run_atlas
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas       105 Jan  7 21:12 job.xml
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas 226559953 Jan  7 21:12 EVNT.47898824._000598.pool.root.1
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 21:12 start_atlas.sh
[2026-01-08 09:28:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  7 21:12 shared
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 21:12 input.tar.gz
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas         0 Jan  7 21:12 boinc_lockfile
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas      2519 Jan  7 21:12 pandaJob.out
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas        57 Jan  7 21:12 setup.sh.local
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas    989843 Jan  7 21:12 agis_schedconf.cvmfs.json
[2026-01-08 09:28:22] drwx------. 5 boincer umatlas      4096 Jan  7 21:12 pilot3
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas      6659 Jan  8 09:19 init_data.xml
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas 215776258 Jan  8 09:23 HITS.47898826._013812.pool.root.1
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas       530 Jan  8 09:23 boinc_task_state.xml
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas      1041 Jan  8 09:26 memory_monitor_summary.json
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas   1516240 Jan  8 09:26 agis_ddmendpoints.agis.ALL.json
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas    877982 Jan  8 09:26 log.47898826._013812.job.log.tgz.1
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas        95 Jan  8 09:26 pilot_heartbeat.json
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas      7826 Jan  8 09:27 heartbeat.json
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 09:27 boinc_mmap_file
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas        27 Jan  8 09:27 wrapper_checkpoint.txt
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas      4823 Jan  8 09:28 pilotlog.txt
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas   5261128 Jan  8 09:28 log.47898826._013812.job.log.1
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas       357 Jan  8 09:28 output.list
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas       620 Jan  8 09:28 runtime_log
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas   6154240 Jan  8 09:28 result.tar.gz
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas      9340 Jan  8 09:28 runtime_log.err
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas       657 Jan  8 09:28 bh5LDmIopx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZmdKDmZvy8hm.diag
[2026-01-08 09:28:22] -rw-r--r--. 1 boincer umatlas     20906 Jan  8 09:28 stderr.txt
[2026-01-08 09:28:22] HITS file was successfully produced:
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas 215776258 Jan  8 09:23 shared/HITS.pool.root.1
[2026-01-08 09:28:22]  *** Contents of shared directory: ***
[2026-01-08 09:28:22] total 438584
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas 226559953 Jan  7 21:12 ATLAS.root_0
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  7 21:12 start_atlas.sh
[2026-01-08 09:28:22] -rw-r--r--. 2 boincer umatlas    592396 Jan  7 21:12 input.tar.gz
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas 215776258 Jan  8 09:23 HITS.pool.root.1
[2026-01-08 09:28:22] -rw-------. 1 boincer umatlas   6154240 Jan  8 09:28 result.tar.gz
09:28:24 (3635346): run_atlas exited; CPU time 71458.910233
09:28:24 (3635346): called boinc_finish(0)

</stderr_txt>
]]>

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