Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:35 (3081726): wrapper (7.7.26015): starting
05:39:35 (3081726): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 05:39:35] Arguments: --nthreads 2
[2026-01-08 05:39:35] Threads: 2
[2026-01-08 05:39:35] Checking for CVMFS
[2026-01-08 05:39:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 05:39:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 05:39:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 05:39:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 05:39:35] 2.9.2.0 2915532 779 51944 154891 2 57 19464332 36864000 0 130560 0 353831 99.980 30200 13096 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 05:39:35] CVMFS is ok
[2026-01-08 05:39:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 05:39:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 05:39:35] Further information can be found at the LHC@home message board.
[2026-01-08 05:39:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 05:39:35] Checking for apptainer binary...
[2026-01-08 05:39:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 05:39:35] Running /usr/bin/apptainer --version
[2026-01-08 05:39:35] apptainer version 1.4.1-1.1
[2026-01-08 05:39:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 05:39:36] thA369
[2026-01-08 05:39:36] apptainer works
[2026-01-08 05:39:36] Set ATHENA_PROC_NUMBER=2
[2026-01-08 05:39:36] Set ATHENA_CORE_NUMBER=2
[2026-01-08 05:39:36] Starting ATLAS job with PandaID=6962320170
[2026-01-08 05:39:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 08:52:24]  *** The last 200 lines of the pilot log: ***
[2026-01-08 08:52:24] 2026-01-08 07:51:51,582 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | job 6962320170 has completed (purged errors)
[2026-01-08 08:52:24] 2026-01-08 07:51:51,583 | INFO     | overall cleanup function is called
[2026-01-08 08:52:24] 2026-01-08 07:51:52,589 | INFO     | --- collectZombieJob: --- 10, [3091889]
[2026-01-08 08:52:24] 2026-01-08 07:51:52,589 | INFO     | zombie collector waiting for pid 3091889
[2026-01-08 08:52:24] 2026-01-08 07:51:52,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 08:52:24] 2026-01-08 07:51:52,589 | INFO     | collected zombie processes
[2026-01-08 08:52:24] 2026-01-08 07:51:52,590 | INFO     | will attempt to kill all subprocesses of pid=3091889
[2026-01-08 08:52:24] 2026-01-08 07:51:52,656 | INFO     | process IDs to be killed: [3091889] (in reverse order)
[2026-01-08 08:52:24] 2026-01-08 07:51:52,686 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 08:52:24] 2026-01-08 07:51:52,686 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 08:52:24] 2026-01-08 07:51:52,688 | INFO     | did not find any defunct processes belonging to 3091889
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | did not find any defunct processes belonging to 3091889
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | ready for new job
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | ***************************************
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | ***************************************
[2026-01-08 08:52:24] 2026-01-08 07:51:52,690 | INFO     | 
[2026-01-08 08:52:24] 2026-01-08 07:51:52,691 | INFO     | architecture information:
[2026-01-08 08:52:24] 2026-01-08 07:51:52,691 | INFO     | executing command: cat /etc/os-release
[2026-01-08 08:52:24] 2026-01-08 07:51:52,699 | INFO     | cat /etc/os-release:
[2026-01-08 08:52:24] NAME="CentOS Linux"
[2026-01-08 08:52:24] VERSION="7 (Core)"
[2026-01-08 08:52:24] ID="centos"
[2026-01-08 08:52:24] ID_LIKE="rhel fedora"
[2026-01-08 08:52:24] VERSION_ID="7"
[2026-01-08 08:52:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 08:52:24] ANSI_COLOR="0;31"
[2026-01-08 08:52:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 08:52:24] HOME_URL="https://www.centos.org/"
[2026-01-08 08:52:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 08:52:24] 
[2026-01-08 08:52:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 08:52:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 08:52:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 08:52:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 08:52:24] 
[2026-01-08 08:52:24] 2026-01-08 07:51:52,699 | INFO     | ***************************************
[2026-01-08 08:52:24] 2026-01-08 07:51:53,202 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 08:52:24] 2026-01-08 07:51:53,233 | INFO     | sufficient remaining disk space (342069608448 B)
[2026-01-08 08:52:24] 2026-01-08 07:51:53,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 08:52:24] 2026-01-08 07:51:53,234 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 08:52:24] 2026-01-08 07:51:53,234 | INFO     | update_server=False
[2026-01-08 08:52:24] 2026-01-08 07:51:53,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 08:52:24] 2026-01-08 07:51:53,235 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 08:52:24] 2026-01-08 07:51:53,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 08:52:24] 2026-01-08 07:51:53,235 | INFO     | aborting loop
[2026-01-08 08:52:24] 2026-01-08 07:51:53,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 08:52:24] 2026-01-08 07:51:53,507 | INFO     | all payload control threads have been joined
[2026-01-08 08:52:24] 2026-01-08 07:51:53,591 | INFO     | all data control threads have been joined
[2026-01-08 08:52:24] 2026-01-08 07:51:53,792 | INFO     | all job control threads have been joined
[2026-01-08 08:52:24] 2026-01-08 07:51:53,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 08:52:24] 2026-01-08 07:51:54,240 | INFO     | [job] retrieve thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,240 | INFO     | [job] queue monitor thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,241 | INFO     | [job] job monitor thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,247 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,333 | INFO     | [payload] failed_post thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,513 | INFO     | [payload] control thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,596 | INFO     | [data] control thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,797 | INFO     | [job] control thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:54,869 | INFO     | [payload] validate_post thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:55,212 | INFO     | [data] copytool_in thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:55,378 | INFO     | [data] copytool_out thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:55,497 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:55,697 | INFO     | [job] validate thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:55,715 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:51:57,933 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:52:03,593 | INFO     | job.realtimelogging is not enabled
[2026-01-08 08:52:24] 2026-01-08 07:52:04,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 08:52:24] 2026-01-08 07:52:07,092 | INFO     | [monitor] cgroup control has ended
[2026-01-08 08:52:24] 2026-01-08 07:52:08,131 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620124755776)>', '<ExcThread(monitor, started 140619611617024)>']
[2026-01-08 08:52:24] 2026-01-08 07:52:13,156 | INFO     | all workflow threads have been joined
[2026-01-08 08:52:24] 2026-01-08 07:52:13,157 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 08:52:24] 2026-01-08 07:52:13,157 | INFO     | traces error code: 0
[2026-01-08 08:52:24] 2026-01-08 07:52:13,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 08:52:24] 2026-01-08 07:52:24,299 | INFO     | PID=3085451 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 08:52:24] 2026-01-08 07:52:24,300 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 08:52:24] 2026-01-08 07:52:24,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 08:52:24] 2026-01-08 07:52:24,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 08:52:24] 2026-01-08 07:52:24,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 08:52:24] 2026-01-08 07:52:24,300 | INFO     | [monitor] control thread has ended
[2026-01-08 08:52:24] 2026-01-08 07:52:24,343 [wrapper] ==== pilot stdout END ====
[2026-01-08 08:52:24] 2026-01-08 07:52:24,345 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 08:52:24] 2026-01-08 07:52:24,347 [wrapper] pilotpid: 3085451
[2026-01-08 08:52:24] 2026-01-08 07:52:24,349 [wrapper] Pilot exit status: 0
[2026-01-08 08:52:24] 2026-01-08 07:52:24,355 [wrapper] pandaids: 6962320170
[2026-01-08 08:52:24] 2026-01-08 07:52:24,372 [wrapper] cleanup supervisor_pilot 3116900 3085452
[2026-01-08 08:52:24] 2026-01-08 07:52:24,375 [wrapper] Test setup, not cleaning
[2026-01-08 08:52:24] 2026-01-08 07:52:24,377 [wrapper] apfmon messages muted
[2026-01-08 08:52:24] 2026-01-08 07:52:24,379 [wrapper] ==== wrapper stdout END ====
[2026-01-08 08:52:24] 2026-01-08 07:52:24,381 [wrapper] ==== wrapper stderr END ====
[2026-01-08 08:52:24]  *** Error codes and diagnostics ***
[2026-01-08 08:52:24]     "exeErrorCode": 0,
[2026-01-08 08:52:24]     "exeErrorDiag": "",
[2026-01-08 08:52:24]     "pilotErrorCode": 0,
[2026-01-08 08:52:24]     "pilotErrorDiag": "",
[2026-01-08 08:52:24]  *** Listing of results directory ***
[2026-01-08 08:52:24] total 447264
[2026-01-08 08:52:24] -rwx------ 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc      5112 Jan  7 22:05 queuedata.json
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc       100 Jan  8 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 08:52:24] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 05:39 run_atlas
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc       105 Jan  8 05:39 job.xml
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc 224411889 Jan  8 05:39 EVNT.47898824._000607.pool.root.1
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc    592395 Jan  8 05:39 input.tar.gz
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc     15847 Jan  8 05:39 start_atlas.sh
[2026-01-08 08:52:24] drwxrwx--x 2 boinc boinc      4096 Jan  8 05:39 shared
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc         0 Jan  8 05:39 boinc_setup_complete
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc      6205 Jan  8 05:39 init_data.xml
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc         0 Jan  8 05:39 boinc_lockfile
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc      2516 Jan  8 05:39 pandaJob.out
[2026-01-08 08:52:24] -rw------- 1 boinc boinc    989835 Jan  8 05:39 agis_schedconf.cvmfs.json
[2026-01-08 08:52:24] drwx------ 5 boinc boinc      4096 Jan  8 05:39 pilot3
[2026-01-08 08:52:24] -rw------- 1 boinc boinc 225790367 Jan  8 08:51 HITS.47898826._014016.pool.root.1
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc       530 Jan  8 08:51 boinc_task_state.xml
[2026-01-08 08:52:24] -rw------- 1 boinc boinc      1017 Jan  8 08:51 memory_monitor_summary.json
[2026-01-08 08:52:24] -rw------- 1 boinc boinc   1516240 Jan  8 08:51 agis_ddmendpoints.agis.ALL.json
[2026-01-08 08:52:24] -rw------- 1 boinc boinc    317173 Jan  8 08:51 log.47898826._014016.job.log.tgz.1
[2026-01-08 08:52:24] -rw------- 1 boinc boinc      7752 Jan  8 08:51 heartbeat.json
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc      8192 Jan  8 08:52 boinc_mmap_file
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc        28 Jan  8 08:52 wrapper_checkpoint.txt
[2026-01-08 08:52:24] -rw------- 1 boinc boinc       747 Jan  8 08:52 pilotlog.txt
[2026-01-08 08:52:24] -rw------- 1 boinc boinc        95 Jan  8 08:52 pilot_heartbeat.json
[2026-01-08 08:52:24] -rw------- 1 boinc boinc   1628440 Jan  8 08:52 log.47898826._014016.job.log.1
[2026-01-08 08:52:24] -rw------- 1 boinc boinc       357 Jan  8 08:52 output.list
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc       620 Jan  8 08:52 runtime_log
[2026-01-08 08:52:24] -rw------- 1 boinc boinc   1966080 Jan  8 08:52 result.tar.gz
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc      8898 Jan  8 08:52 runtime_log.err
[2026-01-08 08:52:24] -rw------- 1 boinc boinc       663 Jan  8 08:52 LosKDmKopx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAviKDmuTRx0m.diag
[2026-01-08 08:52:24] -rw-r--r-- 1 boinc boinc     12923 Jan  8 08:52 stderr.txt
[2026-01-08 08:52:24] HITS file was successfully produced:
[2026-01-08 08:52:24] -rw------- 1 boinc boinc 225790367 Jan  8 08:51 shared/HITS.pool.root.1
[2026-01-08 08:52:24]  *** Contents of shared directory: ***
[2026-01-08 08:52:24] total 442180
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc 224411889 Jan  8 05:39 ATLAS.root_0
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc    592395 Jan  8 05:39 input.tar.gz
[2026-01-08 08:52:24] -rw-r--r-- 2 boinc boinc     15847 Jan  8 05:39 start_atlas.sh
[2026-01-08 08:52:24] -rw------- 1 boinc boinc 225790367 Jan  8 08:51 HITS.pool.root.1
[2026-01-08 08:52:24] -rw------- 1 boinc boinc   1966080 Jan  8 08:52 result.tar.gz
08:52:26 (3081726): run_atlas exited; CPU time 22718.989974
08:52:26 (3081726): called boinc_finish(0)

</stderr_txt>
]]>

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