Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:51:20 (1771623): wrapper (7.7.26015): starting
17:51:20 (1771623): wrapper: running run_atlas (--nthreads 12)
[2026-01-07 17:51:20] Arguments: --nthreads 12
[2026-01-07 17:51:20] Threads: 12
[2026-01-07 17:51:20] Checking for CVMFS
[2026-01-07 17:51:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-07 17:51:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-07 17:51:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-07 17:51:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-07 17:51:21] 2.11.5.0 2104101 89648 245616 154886 3 733 23593434 45568000 15697 130560 0 769544319 99.783 509762526 23578 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-01-07 17:51:21] CVMFS is ok
[2026-01-07 17:51:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-07 17:51:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-07 17:51:21] Further information can be found at the LHC@home message board.
[2026-01-07 17:51:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-07 17:51:21] Checking for apptainer binary...
[2026-01-07 17:51:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-07 17:51:21] Running /usr/bin/apptainer --version
[2026-01-07 17:51:21] apptainer version 1.4.1-1.el9
[2026-01-07 17:51:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-07 17:51:21] wns0090.triumf.lcg
[2026-01-07 17:51:21] apptainer works
[2026-01-07 17:51:21] Set ATHENA_PROC_NUMBER=12
[2026-01-07 17:51:21] Set ATHENA_CORE_NUMBER=12
[2026-01-07 17:51:22] Starting ATLAS job with PandaID=6962319825
[2026-01-07 17:51:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-07 17:56:09]  *** The last 200 lines of the pilot log: ***
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | WARNING  | wrong length of table data, x=[1767837181.0], y=[877.0] (must be same and length>=4)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | could have reported an average CPU frequency of 2706 MHz (4 samples)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . Timing measurements:
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . get job = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . initial setup = 3 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload setup = 13 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-in = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload execution = 37 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-out = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | . log creation = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962319825/pilotlog.txt
[2026-01-07 17:56:09] 2026-01-08 01:55:36,664 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-07 17:56:09] - Log from pilotlog.txt -
[2026-01-07 17:56:09] 2026-01-08 01:55:36,630 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6962319825/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | INFO     | extracted standard info from prmon json
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | WARNING  | wrong length of table data, x=[1767837181.0], y=[877.0] (must be same and length>=4)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | could have reported an average CPU frequency of 2706 MHz (4 samples)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . Timing measurements:
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . get job = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . initial setup = 3 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload setup = 13 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-in = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload execution = 37 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-out = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | . log creation = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962319825/pilotlog.txt
[2026-01-07 17:56:09] 2026-01-08 01:55:36,665 | WARNING  | 
[2026-01-07 17:56:09] [begin log extracts]
[2026-01-07 17:56:09] - Log from pilotlog.txt -
[2026-01-07 17:56:09] 2026-01-08 01:55:36,630 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6962319825/memory_monitor_summary.json (trf name=prmon)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | INFO     | extracted standard info from prmon json
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | INFO     | extracted standard memory fields from prmon json
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-07 17:56:09] 2026-01-08 01:55:36,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | WARNING  | wrong length of table data, x=[1767837181.0], y=[877.0] (must be same and length>=4)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | could have reported an average CPU frequency of 2706 MHz (4 samples)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . Timing measurements:
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . get job = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . initial setup = 3 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload setup = 13 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-in = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . payload execution = 37 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,632 | INFO     | . stage-out = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | . log creation = 0 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | ..............................
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-07 17:56:09] 2026-01-08 01:55:36,633 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962319825/pilotlog.txt
[2026-01-07 17:56:09] [end log extracts]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,665 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,665 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | 
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | job summary report
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | --------------------------------------------------
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | PanDA job id: 6962319825
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | task id: 47898826
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-07 17:53:16,647 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | pilot state: failed 
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | transexitcode: 65
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | exeerrorcode: 65
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | exitcode: 65
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | cpuconsumptiontime: 15 s
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | nevents: 0
[2026-01-07 17:56:09] 2026-01-08 01:55:36,744 | INFO     | neventsw: 0
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | pid: 1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | pgrp: 1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | corecount: 12
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | event service: False
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | sizes: {0: 2283141, 1: 2283994, 2: 2283994, 12: 2284022, 13: 2284312, 23: 2284368, 55: 2312148, 186: 2312286}
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | --------------------------------------------------
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | 
[2026-01-07 17:56:09] 2026-01-08 01:55:36,745 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-07 17:56:09] 2026-01-08 01:55:36,760 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,761 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-07 17:56:09] 2026-01-08 01:55:36,762 | INFO     | job 6962319825 has completed (purged errors)
[2026-01-07 17:56:09] 2026-01-08 01:55:36,762 | INFO     | overall cleanup function is called
[2026-01-07 17:56:09] 2026-01-08 01:55:37,768 | INFO     | --- collectZombieJob: --- 10, [1782115]
[2026-01-07 17:56:09] 2026-01-08 01:55:37,768 | INFO     | zombie collector waiting for pid 1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:37,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-07 17:56:09] 2026-01-08 01:55:37,768 | INFO     | collected zombie processes
[2026-01-07 17:56:09] 2026-01-08 01:55:37,768 | INFO     | will attempt to kill all subprocesses of pid=1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:38,695 | INFO     | process IDs to be killed: [1782115] (in reverse order)
[2026-01-07 17:56:09] 2026-01-08 01:55:39,141 | WARNING  | found no corresponding commands to process id(s)
[2026-01-07 17:56:09] 2026-01-08 01:55:39,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-07 17:56:09] 2026-01-08 01:55:39,188 | INFO     | did not find any defunct processes belonging to 1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:39,238 | INFO     | did not find any defunct processes belonging to 1782115
[2026-01-07 17:56:09] 2026-01-08 01:55:39,239 | INFO     | ready for new job
[2026-01-07 17:56:09] 2026-01-08 01:55:39,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-07 17:56:09] 2026-01-08 01:55:39,260 | INFO     | ***************************************
[2026-01-07 17:56:09] 2026-01-08 01:55:39,260 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-07 17:56:09] 2026-01-08 01:55:39,260 | INFO     | ***************************************
[2026-01-07 17:56:09] 2026-01-08 01:55:39,260 | INFO     | 
[2026-01-07 17:56:09] 2026-01-08 01:55:39,282 | INFO     | architecture information:
[2026-01-07 17:56:09] 2026-01-08 01:55:39,282 | INFO     | executing command: cat /etc/os-release
[2026-01-07 17:56:09] 2026-01-08 01:55:39,308 | INFO     | cat /etc/os-release:
[2026-01-07 17:56:09] NAME="CentOS Linux"
[2026-01-07 17:56:09] VERSION="7 (Core)"
[2026-01-07 17:56:09] ID="centos"
[2026-01-07 17:56:09] ID_LIKE="rhel fedora"
[2026-01-07 17:56:09] VERSION_ID="7"
[2026-01-07 17:56:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-07 17:56:09] ANSI_COLOR="0;31"
[2026-01-07 17:56:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-07 17:56:09] HOME_URL="https://www.centos.org/"
[2026-01-07 17:56:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-07 17:56:09] 
[2026-01-07 17:56:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-07 17:56:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-07 17:56:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-07 17:56:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-07 17:56:09] 
[2026-01-07 17:56:09] 2026-01-08 01:55:39,308 | INFO     | ***************************************
[2026-01-07 17:56:09] 2026-01-08 01:55:39,811 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-07 17:56:09] 2026-01-08 01:55:39,859 | INFO     | sufficient remaining disk space (2064149118976 B)
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | INFO     | current server update state: UPDATING_FINAL
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | INFO     | update_server=False
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | INFO     | aborting loop
[2026-01-07 17:56:09] 2026-01-08 01:55:39,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-07 17:56:09] 2026-01-08 01:55:40,042 | INFO     | all job control threads have been joined
[2026-01-07 17:56:09] 2026-01-08 01:55:40,641 | INFO     | all data control threads have been joined
[2026-01-07 17:56:09] 2026-01-08 01:55:40,867 | INFO     | [job] job monitor thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:40,867 | INFO     | [job] retrieve thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:40,871 | INFO     | [payload] execute_payloads thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,048 | INFO     | [job] control thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,219 | INFO     | [job] validate thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,274 | INFO     | all payload control threads have been joined
[2026-01-07 17:56:09] 2026-01-08 01:55:41,585 | INFO     | [data] copytool_in thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,598 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,598 | INFO     | [job] create_data_payload thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,647 | INFO     | [data] control thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-07 17:56:09] 2026-01-08 01:55:41,808 | INFO     | [payload] validate_pre thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:41,874 | INFO     | [data] copytool_out thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:42,081 | INFO     | [payload] validate_post thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:42,280 | INFO     | [payload] control thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:42,437 | INFO     | [payload] failed_post thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:42,781 | INFO     | [job] queue monitor thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:43,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-07 17:56:09] 2026-01-08 01:55:47,291 | INFO     | [data] queue_monitor thread has finished
[2026-01-07 17:56:09] 2026-01-08 01:55:48,755 | INFO     | [monitor] cgroup control has ended
[2026-01-07 17:56:09] 2026-01-08 01:55:49,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484273870656)>', '<ExcThread(monitor, started 140483565164288)>']
[2026-01-07 17:56:09] 2026-01-08 01:55:54,788 | INFO     | all workflow threads have been joined
[2026-01-07 17:56:09] 2026-01-08 01:55:54,788 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-07 17:56:09] 2026-01-08 01:55:54,788 | INFO     | traces error code: 0
[2026-01-07 17:56:09] 2026-01-08 01:55:54,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-07 17:56:09] 2026-01-08 01:56:08,490 | INFO     | PID=1775391 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-07 17:56:09] 2026-01-08 01:56:08,490 | INFO     | .. there are 35 such processes running
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | INFO     | found 0 job(s) in 20 queues
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | CRITICAL | thread 'MainThread' is not alive
[2026-01-07 17:56:09] 2026-01-08 01:56:08,491 | INFO     | [monitor] control thread has ended
[2026-01-07 17:56:09] 2026-01-08 01:56:08,868 [wrapper] ==== pilot stdout END ====
[2026-01-07 17:56:09] 2026-01-08 01:56:08,893 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-07 17:56:09] 2026-01-08 01:56:08,956 [wrapper] pilotpid: 1775391
[2026-01-07 17:56:09] 2026-01-08 01:56:09,006 [wrapper] Pilot exit status: 0
[2026-01-07 17:56:09] 2026-01-08 01:56:09,160 [wrapper] pandaids: 6962319825
[2026-01-07 17:56:09] 2026-01-08 01:56:09,469 [wrapper] cleanup supervisor_pilot 1775397 1775392
[2026-01-07 17:56:09] 2026-01-08 01:56:09,493 [wrapper] Test setup, not cleaning
[2026-01-07 17:56:09] 2026-01-08 01:56:09,506 [wrapper] apfmon messages muted
[2026-01-07 17:56:09] 2026-01-08 01:56:09,538 [wrapper] ==== wrapper stdout END ====
[2026-01-07 17:56:09] 2026-01-08 01:56:09,558 [wrapper] ==== wrapper stderr END ====
[2026-01-07 17:56:09]  *** Error codes and diagnostics ***
[2026-01-07 17:56:09]     "exeErrorCode": 65,
[2026-01-07 17:56:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-07 17:56:09]     "pilotErrorCode": 1305,
[2026-01-07 17:56:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-07 17:56:09]  *** Listing of results directory ***
[2026-01-07 17:56:09] total 225900
[2026-01-07 17:56:09] -rwx------. 1 boinc boinc     36322 Jan  7 12:59 runpilot2-wrapper.sh
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc    579449 Jan  7 13:00 pilot3.tar.gz
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc      5112 Jan  7 13:04 queuedata.json
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc       100 Jan  7 17:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-07 17:56:09] -rwxr-xr-x. 1 boinc boinc      7986 Jan  7 17:51 run_atlas
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc       105 Jan  7 17:51 job.xml
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc      6595 Jan  7 17:51 init_data.xml
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc 227189169 Jan  7 17:51 EVNT.47898824._000593.pool.root.1
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc     15847 Jan  7 17:51 start_atlas.sh
[2026-01-07 17:56:09] drwxrwx--x. 2 boinc boinc      4096 Jan  7 17:51 shared
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc    592389 Jan  7 17:51 input.tar.gz
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc         0 Jan  7 17:51 boinc_lockfile
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc      2519 Jan  7 17:51 pandaJob.out
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc    989843 Jan  7 17:51 agis_schedconf.cvmfs.json
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc   1516240 Jan  7 17:51 agis_ddmendpoints.agis.ALL.json
[2026-01-07 17:56:09] drwx------. 5 boinc boinc      4096 Jan  7 17:51 pilot3
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc       971 Jan  7 17:53 memory_monitor_summary.json
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc     21585 Jan  7 17:53 log.47898826._013676.job.log.tgz.1
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc      8406 Jan  7 17:55 heartbeat.json
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc       524 Jan  7 17:55 boinc_task_state.xml
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc        95 Jan  7 17:56 pilot_heartbeat.json
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc       893 Jan  7 17:56 pilotlog.txt
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc      8192 Jan  7 17:56 boinc_mmap_file
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc        22 Jan  7 17:56 wrapper_checkpoint.txt
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc     89761 Jan  7 17:56 log.47898826._013676.job.log.1
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc       188 Jan  7 17:56 output.list
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc       620 Jan  7 17:56 runtime_log
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc    133120 Jan  7 17:56 result.tar.gz
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc      8636 Jan  7 17:56 runtime_log.err
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc       644 Jan  7 17:56 DY9LDm7npx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmksiKDmc6VKgm.diag
[2026-01-07 17:56:09] -rw-r--r--. 1 boinc boinc     21782 Jan  7 17:56 stderr.txt
[2026-01-07 17:56:09] No HITS result produced
[2026-01-07 17:56:09]  *** Contents of shared directory: ***
[2026-01-07 17:56:09] total 222596
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc 227189169 Jan  7 17:51 ATLAS.root_0
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc     15847 Jan  7 17:51 start_atlas.sh
[2026-01-07 17:56:09] -rw-r--r--. 2 boinc boinc    592389 Jan  7 17:51 input.tar.gz
[2026-01-07 17:56:09] -rw-------. 1 boinc boinc    133120 Jan  7 17:56 result.tar.gz
17:56:11 (1771623): run_atlas exited; CPU time 24.708470
17:56:11 (1771623): called boinc_finish(0)

</stderr_txt>
]]>

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