Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:04:04 (19308): wrapper (7.7.26015): starting
09:04:04 (19308): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 09:04:04] Arguments: --nthreads 8
[2026-01-08 09:04:04] Threads: 8
[2026-01-08 09:04:04] Checking for CVMFS
[2026-01-08 09:04:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:04:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:04:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:04:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:04:07] 2.11.2.0 17738 33712 104560 154896 1 60 17339026 25165824 899 130560 0 14816199 99.817 8975211 3330 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 09:04:07] CVMFS is ok
[2026-01-08 09:04:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:04:07] Checking for apptainer binary...
[2026-01-08 09:04:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:04:07] Running /usr/bin/apptainer --version
[2026-01-08 09:04:07] apptainer version 1.3.2-1.el7
[2026-01-08 09:04:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:04:32] cg-vwn450.simple-grid.lan
[2026-01-08 09:04:32] apptainer works
[2026-01-08 09:04:32] Set ATHENA_PROC_NUMBER=8
[2026-01-08 09:04:32] Set ATHENA_CORE_NUMBER=8
[2026-01-08 09:04:32] Starting ATLAS job with PandaID=6962319340
[2026-01-08 09:04:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 15:12:52]  *** The last 200 lines of the pilot log: ***
[2026-01-08 15:12:52] 2026-01-08 14:11:36,821 | INFO     | time since job start (21753s) is within the limit (174528.0s)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,688 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 15:12:52] 2026-01-08 14:11:37,689 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 15:12:52] 2026-01-08 14:11:37,691 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6962319340/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,692 | INFO     | extracted standard info from prmon json
[2026-01-08 15:12:52] 2026-01-08 14:11:37,692 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 15:12:52] 2026-01-08 14:11:37,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 15:12:52] 2026-01-08 14:11:37,693 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 15:12:52] 2026-01-08 14:11:37,693 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 15:12:52] 2026-01-08 14:11:37,704 | INFO     | fitting pss+swap vs Time
[2026-01-08 15:12:52] 2026-01-08 14:11:37,708 | INFO     | sum of square deviations: 12844082682.5
[2026-01-08 15:12:52] 2026-01-08 14:11:37,712 | INFO     | sum of deviations: 122722984627.00002
[2026-01-08 15:12:52] 2026-01-08 14:11:37,712 | INFO     | mean x: 1767870804.5
[2026-01-08 15:12:52] 2026-01-08 14:11:37,712 | INFO     | mean y: 2460523.1213872833
[2026-01-08 15:12:52] 2026-01-08 14:11:37,712 | INFO     | intersect: -16889238707.278334
[2026-01-08 15:12:52] 2026-01-08 14:11:37,713 | INFO     | chi2: 8.907973864633494
[2026-01-08 15:12:52] 2026-01-08 14:11:37,714 | INFO     | sum of square deviations: 12295263090.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,717 | INFO     | sum of deviations: 143794796505.99997
[2026-01-08 15:12:52] 2026-01-08 14:11:37,718 | INFO     | mean x: 1767870652.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,718 | INFO     | mean y: 2466303.5454545454
[2026-01-08 15:12:52] 2026-01-08 14:11:37,718 | INFO     | intersect: -20673024638.980564
[2026-01-08 15:12:52] 2026-01-08 14:11:37,718 | INFO     | chi2: 8.197959554996473
[2026-01-08 15:12:52] 2026-01-08 14:11:37,727 | INFO     | current chi2=8.197959554996473 (change=7.970547741006799 %)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,727 | INFO     | right removable region: 340
[2026-01-08 15:12:52] 2026-01-08 14:11:37,728 | INFO     | sum of square deviations: 12295263090.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,732 | INFO     | sum of deviations: -1101682325.999981
[2026-01-08 15:12:52] 2026-01-08 14:11:37,732 | INFO     | mean x: 1767870957.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,732 | INFO     | mean y: 2494917.9384164223
[2026-01-08 15:12:52] 2026-01-08 14:11:37,732 | INFO     | intersect: 160900002.37777445
[2026-01-08 15:12:52] 2026-01-08 14:11:37,733 | INFO     | chi2: 3.8166171302859113
[2026-01-08 15:12:52] 2026-01-08 14:11:37,733 | INFO     | current chi2=3.8166171302859113 (change=57.155047957216475 %)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,733 | INFO     | sum of square deviations: 11762304260.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,737 | INFO     | sum of deviations: -91751074017.49998
[2026-01-08 15:12:52] 2026-01-08 14:11:37,737 | INFO     | mean x: 1767871109.5
[2026-01-08 15:12:52] 2026-01-08 14:11:37,737 | INFO     | mean y: 2520816.2648809524
[2026-01-08 15:12:52] 2026-01-08 14:11:37,737 | INFO     | intersect: 13792682117.63002
[2026-01-08 15:12:52] 2026-01-08 14:11:37,738 | INFO     | chi2: 1.1447923871364303
[2026-01-08 15:12:52] 2026-01-08 14:11:37,738 | INFO     | current chi2=1.1447923871364303 (change=70.00505033496323 %)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,739 | INFO     | sum of square deviations: 11244973630.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,742 | INFO     | sum of deviations: -104043568714.00009
[2026-01-08 15:12:52] 2026-01-08 14:11:37,750 | INFO     | mean x: 1767871262.0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,750 | INFO     | mean y: 2524420.0574018126
[2026-01-08 15:12:52] 2026-01-08 14:11:37,750 | INFO     | intersect: 16359666835.641977
[2026-01-08 15:12:52] 2026-01-08 14:11:37,751 | INFO     | chi2: 1.0466784015094401
[2026-01-08 15:12:52] 2026-01-08 14:11:37,751 | INFO     | current chi2=1.0466784015094401 (change=8.570461048610856 %)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,751 | INFO     | left removable region: 30
[2026-01-08 15:12:52] 2026-01-08 14:11:37,751 | INFO     | sum of square deviations: 9237596457.5
[2026-01-08 15:12:52] 2026-01-08 14:11:37,755 | INFO     | sum of deviations: -51268940900.99999
[2026-01-08 15:12:52] 2026-01-08 14:11:37,755 | INFO     | mean x: 1767871536.5
[2026-01-08 15:12:52] 2026-01-08 14:11:37,755 | INFO     | mean y: 2522002.587096774
[2026-01-08 15:12:52] 2026-01-08 14:11:37,755 | INFO     | intersect: 9814262723.496214
[2026-01-08 15:12:52] 2026-01-08 14:11:37,756 | INFO     | chi2: 0.21968616378499164
[2026-01-08 15:12:52] 2026-01-08 14:11:37,756 | INFO     | current memory leak: -5.55 B/s (using 310 data points, chi2=0.22)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | ..............................
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | . Timing measurements:
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | . get job = 0 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | . initial setup = 12 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,757 | INFO     | . payload setup = 144 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,758 | INFO     | . stage-in = 0 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,758 | INFO     | . payload execution = 21276 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,758 | INFO     | . stage-out = 3 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,758 | INFO     | . log creation = 1 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,758 | INFO     | ..............................
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | 
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | job summary report
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | --------------------------------------------------
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | PanDA job id: 6962319340
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | task id: 47898826
[2026-01-08 15:12:52] 2026-01-08 14:11:37,890 | INFO     | errors: (none)
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | pilot state: finished 
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | transexitcode: 0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | exeerrorcode: 0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | exeerrordiag: 
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | exitcode: 0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | exitmsg: OK
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | cpuconsumptiontime: 80200 s
[2026-01-08 15:12:52] 2026-01-08 14:11:37,891 | INFO     | nevents: 400
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | neventsw: 0
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | pid: 29510
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | pgrp: 29510
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | corecount: 8
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | event service: False
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | sizes: {0: 2283141, 1: 2283827, 2: 2284026, 13: 2284026, 23: 2284082, 34: 2284110, 45: 2284266, 56: 2284294, 66: 2284322, 77: 2284350, 88: 2284406, 98: 2284714, 10
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | --------------------------------------------------
[2026-01-08 15:12:52] 2026-01-08 14:11:37,892 | INFO     | 
[2026-01-08 15:12:52] 2026-01-08 14:11:37,893 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-08 15:12:52] 2026-01-08 14:11:38,290 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,291 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,292 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | job 6962319340 has completed (purged errors)
[2026-01-08 15:12:52] 2026-01-08 14:11:38,293 | INFO     | overall cleanup function is called
[2026-01-08 15:12:52] 2026-01-08 14:11:39,302 | INFO     | --- collectZombieJob: --- 10, [29510]
[2026-01-08 15:12:52] 2026-01-08 14:11:39,302 | INFO     | zombie collector waiting for pid 29510
[2026-01-08 15:12:52] 2026-01-08 14:11:39,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 15:12:52] 2026-01-08 14:11:39,302 | INFO     | collected zombie processes
[2026-01-08 15:12:52] 2026-01-08 14:11:39,302 | INFO     | will attempt to kill all subprocesses of pid=29510
[2026-01-08 15:12:52] 2026-01-08 14:11:39,374 | INFO     | process IDs to be killed: [29510] (in reverse order)
[2026-01-08 15:12:52] 2026-01-08 14:11:40,436 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 15:12:52] 2026-01-08 14:11:40,437 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 15:12:52] 2026-01-08 14:11:40,439 | INFO     | did not find any defunct processes belonging to 29510
[2026-01-08 15:12:52] 2026-01-08 14:11:40,441 | INFO     | did not find any defunct processes belonging to 29510
[2026-01-08 15:12:52] 2026-01-08 14:11:40,441 | INFO     | ready for new job
[2026-01-08 15:12:52] 2026-01-08 14:11:40,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 15:12:52] 2026-01-08 14:11:40,444 | INFO     | ***************************************
[2026-01-08 15:12:52] 2026-01-08 14:11:40,444 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 15:12:52] 2026-01-08 14:11:40,444 | INFO     | ***************************************
[2026-01-08 15:12:52] 2026-01-08 14:11:40,444 | INFO     | 
[2026-01-08 15:12:52] 2026-01-08 14:11:40,445 | INFO     | pilot is running in a VM
[2026-01-08 15:12:52] 2026-01-08 14:11:40,445 | INFO     | architecture information:
[2026-01-08 15:12:52] 2026-01-08 14:11:40,446 | INFO     | executing command: cat /etc/os-release
[2026-01-08 15:12:52] 2026-01-08 14:11:40,724 | INFO     | cat /etc/os-release:
[2026-01-08 15:12:52] NAME="CentOS Linux"
[2026-01-08 15:12:52] VERSION="7 (Core)"
[2026-01-08 15:12:52] ID="centos"
[2026-01-08 15:12:52] ID_LIKE="rhel fedora"
[2026-01-08 15:12:52] VERSION_ID="7"
[2026-01-08 15:12:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 15:12:52] ANSI_COLOR="0;31"
[2026-01-08 15:12:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 15:12:52] HOME_URL="https://www.centos.org/"
[2026-01-08 15:12:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 15:12:52] 
[2026-01-08 15:12:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 15:12:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 15:12:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 15:12:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 15:12:52] 
[2026-01-08 15:12:52] 2026-01-08 14:11:40,725 | INFO     | ***************************************
[2026-01-08 15:12:52] 2026-01-08 14:11:41,228 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-08 15:12:52] 2026-01-08 14:11:41,447 | INFO     | sufficient remaining disk space (496706256896 B)
[2026-01-08 15:12:52] 2026-01-08 14:11:41,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 15:12:52] 2026-01-08 14:11:41,448 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 15:12:52] 2026-01-08 14:11:41,448 | INFO     | update_server=False
[2026-01-08 15:12:52] 2026-01-08 14:11:41,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 15:12:52] 2026-01-08 14:11:41,452 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 15:12:52] 2026-01-08 14:11:41,722 | INFO     | all payload control threads have been joined
[2026-01-08 15:12:52] 2026-01-08 14:11:41,945 | INFO     | all job control threads have been joined
[2026-01-08 15:12:52] 2026-01-08 14:11:42,132 | INFO     | all data control threads have been joined
[2026-01-08 15:12:52] 2026-01-08 14:11:42,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:12:52] 2026-01-08 14:11:42,227 | INFO     | aborting loop
[2026-01-08 15:12:52] 2026-01-08 14:11:42,454 | INFO     | [job] retrieve thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:42,624 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:42,728 | INFO     | [payload] control thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:42,789 | INFO     | [payload] validate_post thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:42,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 15:12:52] 2026-01-08 14:11:42,907 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:12:52] 2026-01-08 14:11:42,951 | INFO     | [job] control thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,037 | INFO     | [job] validate thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,138 | INFO     | [data] control thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,233 | INFO     | [job] job monitor thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,240 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,425 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,438 | INFO     | [payload] failed_post thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,913 | INFO     | [job] queue monitor thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,939 | INFO     | [data] copytool_in thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:43,945 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:44,838 | INFO     | [data] copytool_out thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:11:45,461 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 15:12:52] 2026-01-08 14:12:09,967 | INFO     | PID=23048 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 15:12:52] 2026-01-08 14:12:09,968 | INFO     | .. there are 2 such processes running
[2026-01-08 15:12:52] 2026-01-08 14:12:09,968 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 15:12:52] 2026-01-08 14:12:09,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 15:12:52] 2026-01-08 14:12:09,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 15:12:52] 2026-01-08 14:12:40,436 | INFO     | [monitor] cgroup control has ended
[2026-01-08 15:12:52] 2026-01-08 14:12:41,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476226860864)>', '<ExcThread(monitor, started 140475319166720)>']
[2026-01-08 15:12:52] 2026-01-08 14:12:42,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 15:12:52] 2026-01-08 14:12:42,160 | INFO     | [monitor] control thread has ended
[2026-01-08 15:12:52] 2026-01-08 14:12:46,757 | INFO     | all workflow threads have been joined
[2026-01-08 15:12:52] 2026-01-08 14:12:46,757 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 15:12:52] 2026-01-08 14:12:46,757 | INFO     | traces error code: 0
[2026-01-08 15:12:52] 2026-01-08 14:12:46,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 15:12:52] 2026-01-08 14:12:47,259 [wrapper] ==== pilot stdout END ====
[2026-01-08 15:12:52] 2026-01-08 14:12:47,372 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 15:12:52] 2026-01-08 14:12:47,435 [wrapper] pilotpid: 23048
[2026-01-08 15:12:52] 2026-01-08 14:12:47,510 [wrapper] Pilot exit status: 0
[2026-01-08 15:12:52] 2026-01-08 14:12:48,033 [wrapper] pandaids: 6962319340
[2026-01-08 15:12:52] 2026-01-08 14:12:48,922 [wrapper] cleanup supervisor_pilot 28790 23049
[2026-01-08 15:12:52] 2026-01-08 14:12:48,997 [wrapper] Test setup, not cleaning
[2026-01-08 15:12:52] 2026-01-08 14:12:49,109 [wrapper] apfmon messages muted
[2026-01-08 15:12:52] 2026-01-08 14:12:49,205 [wrapper] ==== wrapper stdout END ====
[2026-01-08 15:12:52] 2026-01-08 14:12:49,297 [wrapper] ==== wrapper stderr END ====
[2026-01-08 15:12:52]  *** Error codes and diagnostics ***
[2026-01-08 15:12:52]     "exeErrorCode": 0,
[2026-01-08 15:12:52]     "exeErrorDiag": "",
[2026-01-08 15:12:52]     "pilotErrorCode": 0,
[2026-01-08 15:12:52]     "pilotErrorDiag": "",
[2026-01-08 15:12:52]  *** Listing of results directory ***
[2026-01-08 15:12:52] total 437244
[2026-01-08 15:12:52] -rwx------. 1 boinc boinc     36322 Jan  7 21:59 runpilot2-wrapper.sh
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc      5112 Jan  7 22:02 queuedata.json
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc       100 Jan  8 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 15:12:52] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 09:04 run_atlas
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc       105 Jan  8 09:04 job.xml
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc      6391 Jan  8 09:04 init_data.xml
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc 222179454 Jan  8 09:04 EVNT.47898824._000568.pool.root.1
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:04 start_atlas.sh
[2026-01-08 15:12:52] drwxrwx--x. 2 boinc boinc        68 Jan  8 09:04 shared
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc    592399 Jan  8 09:04 input.tar.gz
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc         0 Jan  8 09:04 boinc_lockfile
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc      2519 Jan  8 09:04 pandaJob.out
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc    989819 Jan  8 09:08 agis_schedconf.cvmfs.json
[2026-01-08 15:12:52] drwx------. 5 boinc boinc      4096 Jan  8 09:09 pilot3
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc 214788344 Jan  8 15:08 HITS.47898826._013248.pool.root.1
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc       531 Jan  8 15:08 boinc_task_state.xml
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc      1013 Jan  8 15:09 memory_monitor_summary.json
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc   1516240 Jan  8 15:09 agis_ddmendpoints.agis.ALL.json
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc    544967 Jan  8 15:09 log.47898826._013248.job.log.tgz.1
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc        95 Jan  8 15:11 pilot_heartbeat.json
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc      7778 Jan  8 15:11 heartbeat.json
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc      8192 Jan  8 15:12 boinc_mmap_file
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc        28 Jan  8 15:12 wrapper_checkpoint.txt
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc      4885 Jan  8 15:12 pilotlog.txt
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc   2888014 Jan  8 15:12 log.47898826._013248.job.log.1
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc       357 Jan  8 15:12 output.list
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc       620 Jan  8 15:12 runtime_log
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc   3450880 Jan  8 15:12 result.tar.gz
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc      8833 Jan  8 15:12 runtime_log.err
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc       657 Jan  8 15:12 LuLODmrnpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLjdKDmgaUyWm.diag
[2026-01-08 15:12:52] -rw-r--r--. 1 boinc boinc     20796 Jan  8 15:12 stderr.txt
[2026-01-08 15:12:52] HITS file was successfully produced:
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc 214788344 Jan  8 15:08 shared/HITS.pool.root.1
[2026-01-08 15:12:52]  *** Contents of shared directory: ***
[2026-01-08 15:12:52] total 430700
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc 222179454 Jan  8 09:04 ATLAS.root_0
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:04 start_atlas.sh
[2026-01-08 15:12:52] -rw-r--r--. 2 boinc boinc    592399 Jan  8 09:04 input.tar.gz
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc 214788344 Jan  8 15:08 HITS.pool.root.1
[2026-01-08 15:12:52] -rw-------. 1 boinc boinc   3450880 Jan  8 15:12 result.tar.gz
15:12:54 (19308): run_atlas exited; CPU time 80423.014422
15:12:54 (19308): called boinc_finish(0)

</stderr_txt>
]]>

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