Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:14:09 (12529): wrapper (7.7.26015): starting
11:14:09 (12529): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 11:14:10] Arguments: --nthreads 8
[2026-01-08 11:14:10] Threads: 8
[2026-01-08 11:14:10] Checking for CVMFS
[2026-01-08 11:14:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:14:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:14:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:14:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:14:13] 2.11.2.0 21292 33823 131488 154899 0 60 24657416 25165825 899 130560 0 7219938 99.547 11278598 5299 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 11:14:13] CVMFS is ok
[2026-01-08 11:14:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:14:13] Checking for apptainer binary...
[2026-01-08 11:14:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:14:13] Running /usr/bin/apptainer --version
[2026-01-08 11:14:13] apptainer version 1.3.2-1.el7
[2026-01-08 11:14:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:14:33] cg-vwn383.simple-grid.lan
[2026-01-08 11:14:33] apptainer works
[2026-01-08 11:14:33] Set ATHENA_PROC_NUMBER=8
[2026-01-08 11:14:33] Set ATHENA_CORE_NUMBER=8
[2026-01-08 11:14:33] Starting ATLAS job with PandaID=6962317537
[2026-01-08 11:14:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:37:46]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:37:46] 2026-01-08 16:36:39,745 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 17:37:46] 2026-01-08 16:36:39,746 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-08 17:37:46] 2026-01-08 16:36:39,748 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6962317537/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,749 | INFO     | extracted standard info from prmon json
[2026-01-08 17:37:46] 2026-01-08 16:36:39,749 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:37:46] 2026-01-08 16:36:39,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:37:46] 2026-01-08 16:36:39,749 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:37:46] 2026-01-08 16:36:39,749 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:37:46] 2026-01-08 16:36:39,757 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:37:46] 2026-01-08 16:36:39,758 | INFO     | sum of square deviations: 14588031660.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,762 | INFO     | sum of deviations: 219013365196.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,763 | INFO     | mean x: 1767879041.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,763 | INFO     | mean y: 2442807.0997229917
[2026-01-08 17:37:46] 2026-01-08 16:36:39,763 | INFO     | intersect: -26539118594.26121
[2026-01-08 17:37:46] 2026-01-08 16:36:39,771 | INFO     | chi2: 8.590834850309752
[2026-01-08 17:37:46] 2026-01-08 16:36:39,771 | INFO     | sum of square deviations: 13990234405.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,776 | INFO     | sum of deviations: 239690851054.00003
[2026-01-08 17:37:46] 2026-01-08 16:36:39,776 | INFO     | mean x: 1767878888.5
[2026-01-08 17:37:46] 2026-01-08 16:36:39,776 | INFO     | mean y: 2448013.179775281
[2026-01-08 17:37:46] 2026-01-08 16:36:39,776 | INFO     | intersect: -30286136372.048374
[2026-01-08 17:37:46] 2026-01-08 16:36:39,777 | INFO     | chi2: 7.868352398725605
[2026-01-08 17:37:46] 2026-01-08 16:36:39,777 | INFO     | current chi2=7.868352398725605 (change=8.409921319324365 %)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,777 | INFO     | right removable region: 355
[2026-01-08 17:37:46] 2026-01-08 16:36:39,778 | INFO     | sum of square deviations: 13990234405.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,782 | INFO     | sum of deviations: 89833088258.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,782 | INFO     | mean x: 1767879193.5
[2026-01-08 17:37:46] 2026-01-08 16:36:39,782 | INFO     | mean y: 2475754.5393258426
[2026-01-08 17:37:46] 2026-01-08 16:36:39,782 | INFO     | intersect: -11349303137.915003
[2026-01-08 17:37:46] 2026-01-08 16:36:39,783 | INFO     | chi2: 3.5260377089576282
[2026-01-08 17:37:46] 2026-01-08 16:36:39,783 | INFO     | current chi2=3.5260377089576282 (change=58.955820122295876 %)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,783 | INFO     | sum of square deviations: 13408995600.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,788 | INFO     | sum of deviations: -4786944805.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,788 | INFO     | mean x: 1767879346.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,788 | INFO     | mean y: 2500553.3475783477
[2026-01-08 17:37:46] 2026-01-08 16:36:39,788 | INFO     | intersect: 633624695.9493924
[2026-01-08 17:37:46] 2026-01-08 16:36:39,789 | INFO     | chi2: 0.9379735143408268
[2026-01-08 17:37:46] 2026-01-08 16:36:39,789 | INFO     | current chi2=0.9379735143408268 (change=73.39865333947006 %)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,789 | INFO     | sum of square deviations: 12844082682.5
[2026-01-08 17:37:46] 2026-01-08 16:36:39,793 | INFO     | sum of deviations: -17712050188.499996
[2026-01-08 17:37:46] 2026-01-08 16:36:39,794 | INFO     | mean x: 1767879498.5
[2026-01-08 17:37:46] 2026-01-08 16:36:39,794 | INFO     | mean y: 2504023.8699421966
[2026-01-08 17:37:46] 2026-01-08 16:36:39,794 | INFO     | intersect: 2440418134.101863
[2026-01-08 17:37:46] 2026-01-08 16:36:39,794 | INFO     | chi2: 0.8678539118521864
[2026-01-08 17:37:46] 2026-01-08 16:36:39,795 | INFO     | current chi2=0.8678539118521864 (change=7.475648450256917 %)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,795 | INFO     | left removable region: 30
[2026-01-08 17:37:46] 2026-01-08 16:36:39,795 | INFO     | sum of square deviations: 10644478650.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,799 | INFO     | sum of deviations: 22575896686.999996
[2026-01-08 17:37:46] 2026-01-08 16:36:39,799 | INFO     | mean x: 1767879773.0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,799 | INFO     | mean y: 2505218.670769231
[2026-01-08 17:37:46] 2026-01-08 16:36:39,799 | INFO     | intersect: -3746994632.154241
[2026-01-08 17:37:46] 2026-01-08 16:36:39,800 | INFO     | chi2: 0.00225425573460037
[2026-01-08 17:37:46] 2026-01-08 16:36:39,800 | INFO     | current memory leak: 2.12 B/s (using 325 data points, chi2=0.00)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,801 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,801 | INFO     | ..............................
[2026-01-08 17:37:46] 2026-01-08 16:36:39,801 | INFO     | . Timing measurements:
[2026-01-08 17:37:46] 2026-01-08 16:36:39,801 | INFO     | . get job = 0 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,801 | INFO     | . initial setup = 7 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | . payload setup = 145 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | . stage-in = 0 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | . payload execution = 22181 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | . stage-out = 7 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | . log creation = 1 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,802 | INFO     | ..............................
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | 
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | job summary report
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | --------------------------------------------------
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | PanDA job id: 6962317537
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | task id: 47898826
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | errors: (none)
[2026-01-08 17:37:46] 2026-01-08 16:36:39,943 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | pilot state: finished 
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | transexitcode: 0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | exeerrorcode: 0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | exeerrordiag: 
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | exitcode: 0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | exitmsg: OK
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | cpuconsumptiontime: 83328 s
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | nevents: 400
[2026-01-08 17:37:46] 2026-01-08 16:36:39,944 | INFO     | neventsw: 0
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | pid: 22778
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | pgrp: 22778
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | corecount: 8
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | event service: False
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | sizes: {0: 2283140, 1: 2283826, 2: 2284025, 12: 2284025, 23: 2284053, 34: 2284081, 45: 2284237, 55: 2284265, 66: 2284293, 77: 2284321, 88: 2284377, 98: 2284685, 10
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | --------------------------------------------------
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | 
[2026-01-08 17:37:46] 2026-01-08 16:36:39,945 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2026-01-08 17:37:46] 2026-01-08 16:36:40,032 | INFO     | time since job start (22663s) is within the limit (174528.0s)
[2026-01-08 17:37:46] 2026-01-08 16:36:40,300 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,303 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:37:46] 2026-01-08 16:36:40,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,303 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:37:46] 2026-01-08 16:36:40,303 | INFO     | job 6962317537 has completed (purged errors)
[2026-01-08 17:37:46] 2026-01-08 16:36:40,303 | INFO     | overall cleanup function is called
[2026-01-08 17:37:46] 2026-01-08 16:36:41,311 | INFO     | --- collectZombieJob: --- 10, [22778]
[2026-01-08 17:37:46] 2026-01-08 16:36:41,312 | INFO     | zombie collector waiting for pid 22778
[2026-01-08 17:37:46] 2026-01-08 16:36:41,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:37:46] 2026-01-08 16:36:41,312 | INFO     | collected zombie processes
[2026-01-08 17:37:46] 2026-01-08 16:36:41,312 | INFO     | will attempt to kill all subprocesses of pid=22778
[2026-01-08 17:37:46] 2026-01-08 16:36:41,395 | INFO     | process IDs to be killed: [22778] (in reverse order)
[2026-01-08 17:37:46] 2026-01-08 16:36:42,124 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:37:46] 2026-01-08 16:36:42,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:37:46] 2026-01-08 16:36:42,127 | INFO     | did not find any defunct processes belonging to 22778
[2026-01-08 17:37:46] 2026-01-08 16:36:42,128 | INFO     | did not find any defunct processes belonging to 22778
[2026-01-08 17:37:46] 2026-01-08 16:36:42,128 | INFO     | ready for new job
[2026-01-08 17:37:46] 2026-01-08 16:36:42,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:37:46] 2026-01-08 16:36:42,131 | INFO     | ***************************************
[2026-01-08 17:37:46] 2026-01-08 16:36:42,131 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:37:46] 2026-01-08 16:36:42,131 | INFO     | ***************************************
[2026-01-08 17:37:46] 2026-01-08 16:36:42,131 | INFO     | 
[2026-01-08 17:37:46] 2026-01-08 16:36:42,131 | INFO     | pilot is running in a VM
[2026-01-08 17:37:46] 2026-01-08 16:36:42,132 | INFO     | architecture information:
[2026-01-08 17:37:46] 2026-01-08 16:36:42,132 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:37:46] 2026-01-08 16:36:42,461 | INFO     | cat /etc/os-release:
[2026-01-08 17:37:46] NAME="CentOS Linux"
[2026-01-08 17:37:46] VERSION="7 (Core)"
[2026-01-08 17:37:46] ID="centos"
[2026-01-08 17:37:46] ID_LIKE="rhel fedora"
[2026-01-08 17:37:46] VERSION_ID="7"
[2026-01-08 17:37:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:37:46] ANSI_COLOR="0;31"
[2026-01-08 17:37:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:37:46] HOME_URL="https://www.centos.org/"
[2026-01-08 17:37:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:37:46] 
[2026-01-08 17:37:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:37:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:37:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:37:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:37:46] 
[2026-01-08 17:37:46] 2026-01-08 16:36:42,462 | INFO     | ***************************************
[2026-01-08 17:37:46] 2026-01-08 16:36:42,966 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2026-01-08 17:37:46] 2026-01-08 16:36:43,130 | INFO     | sufficient remaining disk space (496583573504 B)
[2026-01-08 17:37:46] 2026-01-08 16:36:43,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:37:46] 2026-01-08 16:36:43,131 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:37:46] 2026-01-08 16:36:43,131 | INFO     | update_server=False
[2026-01-08 17:37:46] 2026-01-08 16:36:43,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:37:46] 2026-01-08 16:36:43,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:37:46] 2026-01-08 16:36:43,329 | INFO     | all data control threads have been joined
[2026-01-08 17:37:46] 2026-01-08 16:36:44,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:37:46] 2026-01-08 16:36:44,098 | INFO     | aborting loop
[2026-01-08 17:37:46] 2026-01-08 16:36:44,137 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:44,282 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:44,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:37:46] 2026-01-08 16:36:44,335 | INFO     | [data] control thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:44,393 | INFO     | all payload control threads have been joined
[2026-01-08 17:37:46] 2026-01-08 16:36:44,488 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:44,714 | INFO     | all job control threads have been joined
[2026-01-08 17:37:46] 2026-01-08 16:36:44,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:37:46] 2026-01-08 16:36:45,033 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,104 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,130 | INFO     | [job] validate thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,333 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,346 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,400 | INFO     | [payload] control thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,422 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,576 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,721 | INFO     | [job] control thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:45,952 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:46,338 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:36:47,143 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:37:46] 2026-01-08 16:37:13,154 | INFO     | PID=16262 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 17:37:46] 2026-01-08 16:37:13,155 | INFO     | .. there are 2 such processes running
[2026-01-08 17:37:46] 2026-01-08 16:37:13,155 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:37:46] 2026-01-08 16:37:13,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:37:46] 2026-01-08 16:37:13,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:37:46] 2026-01-08 16:37:35,876 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:37:46] 2026-01-08 16:37:35,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205219141440)>', '<ExcThread(monitor, started 140204501362432)>']
[2026-01-08 17:37:46] 2026-01-08 16:37:36,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:37:46] 2026-01-08 16:37:36,291 | INFO     | [monitor] control thread has ended
[2026-01-08 17:37:46] 2026-01-08 16:37:40,977 | INFO     | all workflow threads have been joined
[2026-01-08 17:37:46] 2026-01-08 16:37:40,978 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:37:46] 2026-01-08 16:37:40,978 | INFO     | traces error code: 0
[2026-01-08 17:37:46] 2026-01-08 16:37:40,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:37:46] 2026-01-08 16:37:41,401 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:37:46] 2026-01-08 16:37:41,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:37:46] 2026-01-08 16:37:41,604 [wrapper] pilotpid: 16262
[2026-01-08 17:37:46] 2026-01-08 16:37:41,702 [wrapper] Pilot exit status: 0
[2026-01-08 17:37:46] 2026-01-08 16:37:42,096 [wrapper] pandaids: 6962317537
[2026-01-08 17:37:46] 2026-01-08 16:37:43,000 [wrapper] cleanup supervisor_pilot 24324 16263
[2026-01-08 17:37:46] 2026-01-08 16:37:43,111 [wrapper] Test setup, not cleaning
[2026-01-08 17:37:46] 2026-01-08 16:37:43,241 [wrapper] apfmon messages muted
[2026-01-08 17:37:46] 2026-01-08 16:37:43,316 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:37:46] 2026-01-08 16:37:43,423 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:37:46]  *** Error codes and diagnostics ***
[2026-01-08 17:37:46]     "exeErrorCode": 0,
[2026-01-08 17:37:46]     "exeErrorDiag": "",
[2026-01-08 17:37:46]     "pilotErrorCode": 0,
[2026-01-08 17:37:46]     "pilotErrorDiag": "",
[2026-01-08 17:37:46]  *** Listing of results directory ***
[2026-01-08 17:37:46] total 447996
[2026-01-08 17:37:46] -rwx------. 1 boinc boinc     36322 Jan  7 21:56 runpilot2-wrapper.sh
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc      5112 Jan  7 21:59 queuedata.json
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc    579449 Jan  7 22:00 pilot3.tar.gz
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc       100 Jan  8 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:37:46] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 11:14 run_atlas
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc       105 Jan  8 11:14 job.xml
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc 222089263 Jan  8 11:14 EVNT.47898824._000544.pool.root.1
[2026-01-08 17:37:46] drwxrwx--x. 2 boinc boinc        68 Jan  8 11:14 shared
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc    592396 Jan  8 11:14 input.tar.gz
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc      6391 Jan  8 11:14 init_data.xml
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc     15847 Jan  8 11:14 start_atlas.sh
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc         0 Jan  8 11:14 boinc_lockfile
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc      2518 Jan  8 11:14 pandaJob.out
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc    989835 Jan  8 11:18 agis_schedconf.cvmfs.json
[2026-01-08 17:37:46] drwx------. 5 boinc boinc      4096 Jan  8 11:18 pilot3
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc 225632059 Jan  8 17:33 HITS.47898826._012771.pool.root.1
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc       531 Jan  8 17:33 boinc_task_state.xml
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc      1014 Jan  8 17:34 memory_monitor_summary.json
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc   1516240 Jan  8 17:34 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc    554968 Jan  8 17:34 log.47898826._012771.job.log.tgz.1
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc        95 Jan  8 17:36 pilot_heartbeat.json
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc      7775 Jan  8 17:36 heartbeat.json
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc      8192 Jan  8 17:37 boinc_mmap_file
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc        28 Jan  8 17:37 wrapper_checkpoint.txt
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc      4885 Jan  8 17:37 pilotlog.txt
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc   3008037 Jan  8 17:37 log.47898826._012771.job.log.1
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc       357 Jan  8 17:37 output.list
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc       620 Jan  8 17:37 runtime_log
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc   3584000 Jan  8 17:37 result.tar.gz
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc       657 Jan  8 17:37 tGKODmMlpx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbgdKDmaDC0Eo.diag
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc      8833 Jan  8 17:37 runtime_log.err
[2026-01-08 17:37:46] -rw-r--r--. 1 boinc boinc     20534 Jan  8 17:37 stderr.txt
[2026-01-08 17:37:46] HITS file was successfully produced:
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc 225632059 Jan  8 17:33 shared/HITS.pool.root.1
[2026-01-08 17:37:46]  *** Contents of shared directory: ***
[2026-01-08 17:37:46] total 441328
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc 222089263 Jan  8 11:14 ATLAS.root_0
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc    592396 Jan  8 11:14 input.tar.gz
[2026-01-08 17:37:46] -rw-r--r--. 2 boinc boinc     15847 Jan  8 11:14 start_atlas.sh
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc 225632059 Jan  8 17:33 HITS.pool.root.1
[2026-01-08 17:37:46] -rw-------. 1 boinc boinc   3584000 Jan  8 17:37 result.tar.gz
17:37:48 (12529): run_atlas exited; CPU time 83563.692677
17:37:48 (12529): called boinc_finish(0)

</stderr_txt>
]]>

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